Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006966.1

Orthogroup ID

OG0008771

Physical Location & Seq

Genomic Coordinates Forward (+)

4058 .. 13943

Gene Structure 9886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3249 bp

atgcctaaaaacacccctagctctctgattttcgaggctccatacaagcataaggaagagaagacgccaaagtcgccatctgccaccaccgtgaacatccatcttcaagcaacatccaccgtgcctcttcactcccttttctgtgactttagagagaagtcatcctccaccttaccggcctccggtgaccggaatccggagaccggtgatcggaatccggctattattgccccccaccctccttctcccacacctccaccacctaccaatcagtcctcaagtcactttcttttttcctccattgatgctctgctcaagcaagtcagagcccagagaatcggccttgatgcatcggtctatcgctctgtgattgcttcactcatcataggaaagaaaacccataatgcctttttggtgttcggcgaggttgggattgaagatattgggcatgagatttgcaactcactcttggctgctctggcttctgatgggtatttggagcatgcccagaaggtgtttgaagaaatgactctgagagctgtacctgtaaacaccgctagatttggtgtgtttgtgtggcggctatgtggaaacgctgaattgagtaagatattgagtacgttcgacatgtgttggggaggtgggaagagacgagaagctggtggtctagagtcggatttccgacgtaattccagcgacgaagaagaagaagaaaagatggaagctttcggtggattcttggtggacgagaaggcggttcgggtcgagaacatcttcctggacttcctcaaaagcttcagactgggcggcgaaggcgaggtctattacgaggccgagatcgaggccatgatcgccaacgagtccaccaccatgttcatcgacttctctcacgtcatgctcttcaataatcttctccagaaggccatttccgacgagttcttgaggttcgagccgtacttgaagaacgcgtgcaagagatttgtgatggagcggcggtccaacgcgattccggatgatgttaacaaggacatcaatgttgccttcttcaatcttccagcctccaagaggctgagggaattgacgacggcagaaatagggaaactggtgtcggtgaaaggagtggtgactcggacgagtgaggtccggcccgagcttctccacgggactttcaagtgcttggagtgtggaggtgtcatcaagaatgttgaacagcagtataagtacactgagccgacaatttgtgtcaatgccacttgcgcaaatagagcaaggtgggcattacttcggcaagagagcaaatttgcggattggcagagggtacggatgcaggagacttccaaggagatacctgcgggctcccttcccagatcgctggatgttataatccgccatgagattgttgagaaggccagggctggtgacacggtcgtatttactggcacagtggttgtgataccagacatattggctttggctgcccccggagagagatcagaagtttctcgccaagcttcccagcgcagtaatggtgcggctgggcatgaaggagtcaggggtcttcgagcattgggagtgagagatctctcctaccgccttgcctttattgcgaattcagttcagatttctgatggtaggcaggatactgacatacggaatagaaagaaggatgctgacgatgatgatcaccagcagttcactgcagaagagcaagatgaagttcaaagaatgaggaatacacctgatttcttcaataagatcgttgatagcattgccccaactgtatttggtcaccaagatatcaagcgagcaatcctacttatgctcctgggtggtgtccacaagtttactcatgaaggtatcaacttgagaggagatatcaatgtttgtatagtaggggaccccagttgtgcaaaatctcagttcctcaagtatgctgctggaatagttccaagatctgtttacacatcagggaaatcctcctctgctgctggtttaactgcaactgtggccaaagaaccagaaactggggaattttgtattgaggctggcgcattaatgctcgccgacaatggcatttgttgcattgatgaatttgacaagatggacgttagggatcaggttgcaatccatgaggcaatggaacagcagacaataagcattacaaaagcaggaatacaggcaacactgaatgctcgaacatcaattcttgctgctgcgaaccccacagggggccgttatgataaatctaaacccctcaagtataacgtggctcttcctcctcctattttgtcaaggtttgatctggtatatgtcatgatcgatgacccagatgatcaaactgattaccacatagcccaccatattgtaagagtacatcaaaaacgggaagaggcgcttagtcctacattcactactgcacagctgaagcggtatattgcatatgccaaaactctcaaaccaaagttaaattcagatgctagaaagctgttggtggactcttatgttgctctcagaagaggtgatactgctcctggtagtagagttgcttatcgcatgacagttaggcaactagaggcattaatcagactctcagaggccattgctcgaagttatttagagattcaggttaagccacaccatgtccgtttagcagtgagattgctaaaaacctcaataattagtgtggagtctagtgagattgatctatcagagtttgaagattctcgtgacaatgttgagggcaatgacaatgacaatggaaataatggtacttatcacggtgatgacaatggaaataatggtacgggtccaggtgatgatcaaacaaccaatggtagagcttctgtgaatggagaaggtgggtcaggttctgcaaaccaacaaggaaagaagcttataataagtgatgaatattttcagagggttacccaggcccttatcatgcgtctgagacagcacgaagaagatgttagacaaagcgggacagggctggctggaatgaggcagagggacttgattcagtggtatgtgagtcagcagaacgagaaaaataattacgatttcgtggaggaagcagctgccgaagtttctaaaatcaaagctatcatagagagcttaataagaagagaagggcatctgatagtccttgatgatgagaggcaagcagcagaaggtgaaggagcaccacagccaccagtatccagaaatgacagaatattggctgtggctcctaactatgtcattgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

1082

Amino Acids

119.91

Weight (kDa)

5.94

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCM_N	PF14551	257 - 350	2.2e-16	MCM N-terminal domain
MCM_OB	PF17207	357 - 485	1.8e-40	MCM OB domain
MCM	PF00493	570 - 792	4.5e-102	MCM P-loop domain
Mg_chelatase	PF01078	679 - 769	2.5e-06	Magnesium chelatase, subunit ChlI
MCM_lid	PF17855	807 - 892	8e-23	MCM AAA-lid domain
WHD_MCM6	PF18263	963 - 1081	8.1e-20	MCM6 C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44635 AT5G44635
fragaria_vesca	FvH4_3g13360 FvH4_3g13360 FvH4_3g13360 FvH4_3g13360
malus_domestica	MD05G1242400.v1.1 MD10G1224200.v1.1
prunus_persica	Prupe.4G121000_v2.0.a1 Prupe.4G121000_v2.0.a1 Prupe.4G121000_v2.0.a1
pyrus_communis	pycom05g21890 pycom10g18820
rosa_chinensis	RchiOBHm_Chr5g0022071
rosa_laevigata	RLG00000032641
rosa_multiflora	Rmu_sc0006966.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056860
rosa_rugosa	Rorug05G0070900
rosa_samantha	Rh5AG158900 Rh5BG158200 Rh5CG172600 Rh5DG158400
rosa_wichuraiana	Rw5G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1382, 2897
AasI	GACNNNNNNGTC	1 cut(s)	70
Acc16I	TGCGCA	1 cut(s)	1258
Acc36I	ACCTGC	1 cut(s)	1357
AccB7I	CCANNNNNTGG	1 cut(s)	2024
AccBSI	CCGCTC	1 cut(s)	991
AccII	CGCG	2 cut(s)	968, 1004
AccIII	TCCGGA	2 cut(s)	196, 1009
AclWI	GGATC	1 cut(s)	2121
AcoI	YGGCCR	1 cut(s)	2007
AcsI	RAATTY	5 cut(s)	1298, 1609, 2030, 2090, 2467
AcuI	CTGAAG	2 cut(s)	781, 2444
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	8 cut(s)	543, 619, 956, 1223, 1320, 2373, 2770, 2803
AfiI	CCNNNNNNNGG	9 cut(s)	182, 189, 196, 203, 210, 1065, 2024, 2227, 2228
AflIII	ACRYGT	2 cut(s)	627, 966
AgeI	ACCGGT	1 cut(s)	203
AjiI	CACGTC	1 cut(s)	892
AjnI	CCWGG	6 cut(s)	777, 1409, 1824, 2530, 2809, 2928
AjuI	GAANNNNNNNTTGG	2 cut(s)	2452, 2484
AleI	CACNNNNGTG	1 cut(s)	89
Alw21I	GWGCWC	1 cut(s)	3184
Alw26I	GTCTC	4 cut(s)	194, 643, 1325, 2944
AlwI	GGATC	1 cut(s)	2121
AlwNI	CAGNNNCTG	2 cut(s)	2024, 2870
Ama87I	CYCGRG	1 cut(s)	1148
Aor13HI	TCCGGA	2 cut(s)	196, 1009
ApeKI	GCWGC	9 cut(s)	473, 1475, 1934, 1985, 2210, 2213, 3074, 3077, 3164
ApoI	RAATTY	5 cut(s)	1298, 1609, 2030, 2090, 2467
ArsI	GACNNNNNNTTYG	2 cut(s)	804, 836
AseI	ATTAAT	2 cut(s)	2054, 2579
AsiGI	ACCGGT	1 cut(s)	203
Asp700I	GAANNNNTTC	2 cut(s)	773, 2913
AspLEI	GCGC	4 cut(s)	1259, 1521, 2051, 2395
AspS9I	GGNCC	7 cut(s)	996, 1141, 1146, 1897, 2230, 2807, 2932
AsuC2I	CCSGG	1 cut(s)	1482
AvaI	CYCGRG	1 cut(s)	1148
AvaII	GGWCC	4 cut(s)	996, 1141, 1897, 2807
BalI	TGGCCA	1 cut(s)	2009
BanII	GRGCYC	2 cut(s)	331, 1358
BarI	GAAGNNNNNNTAC	2 cut(s)	2506, 2538
BauI	CACGAG	1 cut(s)	2724
BbsI	GAAGAC	2 cut(s)	68, 1550
Bbv12I	GWGCWC	1 cut(s)	3184
BbvCI	CCTCAGC	1 cut(s)	1070
BbvI	GCAGC	9 cut(s)	460, 1462, 1921, 1972, 2197, 2200, 3064, 3086, 3176
BccI	CCATC	7 cut(s)	85, 108, 482, 712, 979, 1622, 2095
BceAI	ACGGC	3 cut(s)	937, 1101, 2217
BciT130I	CCWGG	6 cut(s)	779, 1411, 1826, 2532, 2811, 2930
BciVI	GTATCC	2 cut(s)	1633, 3208
BclI	TGATCA	3 cut(s)	1681, 2332, 2818
BcnI	CCSGG	1 cut(s)	1482
BcoDI	GTCTC	4 cut(s)	194, 643, 1325, 2944
BfaI	CTAG	6 cut(s)	18, 558, 668, 2478, 2570, 2691
BfmI	CTRYAG	1 cut(s)	1698
BfoI	RGCGCY	1 cut(s)	2396
BfuAI	ACCTGC	1 cut(s)	1357
BfuI	GTATCC	2 cut(s)	1633, 3208
BglII	AGATCT	2 cut(s)	1579, 1952
Bme1390I	CCNGG	7 cut(s)	779, 1411, 1482, 1826, 2532, 2811, 2930
Bme18I	GGWCC	4 cut(s)	996, 1141, 1897, 2807
BmeT110I	CYCGRG	1 cut(s)	1148
BmgBI	CACGTC	1 cut(s)	892
BmgT120I	GGNCC	7 cut(s)	996, 1141, 1146, 1897, 2230, 2807, 2932
BmiI	GGNNCC	7 cut(s)	39, 1357, 1898, 1899, 2231, 2808, 3228
BmrFI	CCNGG	7 cut(s)	779, 1411, 1482, 1826, 2532, 2811, 2930
BmrI	ACTGGG	3 cut(s)	812, 1896, 2034
BmsI	GCATC	7 cut(s)	295, 337, 359, 1314, 1657, 2464, 3142
BmuI	ACTGGG	3 cut(s)	812, 1896, 2034
BpiI	GAAGAC	2 cut(s)	68, 1550
BpmI	CTGGAG	1 cut(s)	899
Bpu10I	CCTNAGC	1 cut(s)	1070
BpuEI	CTTGAG	6 cut(s)	262, 299, 961, 1885, 1910, 2240
BpuMI	CCSGG	1 cut(s)	1482
Bsa29I	ATCGAT	1 cut(s)	2319
BsaBI	GATNNNNATC	2 cut(s)	213, 1680
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	6 cut(s)	1159, 1338, 1410, 1480, 1825, 2928
BsaWI	WCCGGW	5 cut(s)	182, 189, 196, 203, 1009
BsaXI	ACNNNNNCTCC	4 cut(s)	980, 1010, 1806, 1836
Bsc4I	CCNNNNNNNGG	9 cut(s)	182, 189, 196, 203, 210, 1065, 2024, 2227, 2228
Bse118I	RCCGGY	2 cut(s)	175, 203
Bse1I	ACTGG	6 cut(s)	807, 1107, 1441, 1902, 2029, 3194
Bse3DI	GCAATG	4 cut(s)	1767, 2142, 2598, 2749
Bse8I	GATNNNNATC	2 cut(s)	213, 1680
BseAI	TCCGGA	2 cut(s)	196, 1009
BseBI	CCWGG	6 cut(s)	779, 1411, 1826, 2532, 2811, 2930
BseCI	ATCGAT	1 cut(s)	2319
BseDI	CCNNGG	6 cut(s)	1159, 1338, 1410, 1480, 1825, 2928
BseGI	GGATG	7 cut(s)	96, 113, 161, 1018, 1329, 1381, 1672
BseJI	GATNNNNATC	2 cut(s)	213, 1680
BseLI	CCNNNNNNNGG	9 cut(s)	182, 189, 196, 203, 210, 1065, 2024, 2227, 2228
BseMI	GCAATG	4 cut(s)	1767, 2142, 2598, 2749
BseMII	CTCAG	7 cut(s)	524, 1061, 1218, 1931, 2524, 2604, 2939
BseNI	ACTGG	6 cut(s)	807, 1107, 1441, 1902, 2029, 3194
BseRI	GAGGAG	3 cut(s)	1884, 1969, 2268
BseXI	GCAGC	9 cut(s)	460, 1462, 1921, 1972, 2197, 2200, 3064, 3086, 3176
BseYI	CCCAGC	2 cut(s)	1515, 1535
BsgI	GTGCAG	1 cut(s)	2400
Bsh1236I	CGCG	2 cut(s)	968, 1004
Bsh1285I	CGRYCG	1 cut(s)	1428
BshTI	ACCGGT	1 cut(s)	203
BshVI	ATCGAT	1 cut(s)	2319
BsiEI	CGRYCG	1 cut(s)	1428
BsiHKAI	GWGCWC	1 cut(s)	3184
BsiHKCI	CYCGRG	1 cut(s)	1148
BsiSI	CCGG	9 cut(s)	176, 183, 190, 197, 204, 218, 1010, 1144, 1482
BslFI	GGGAC	4 cut(s)	1177, 1910, 2995, 3023
BslI	CCNNNNNNNGG	9 cut(s)	182, 189, 196, 203, 210, 1065, 2024, 2227, 2228
BsmAI	GTCTC	4 cut(s)	194, 643, 1325, 2944
BsmBI	CGTCTC	1 cut(s)	643
BsmFI	GGGAC	4 cut(s)	1177, 1910, 2995, 3023
BsmI	GAATGC	1 cut(s)	2194
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	1148
Bsp1286I	GDGCHC	3 cut(s)	331, 1358, 3184
Bsp13I	TCCGGA	2 cut(s)	196, 1009
BspCNI	CTCAG	7 cut(s)	525, 1062, 1219, 1930, 2523, 2603, 2940
BspDI	ATCGAT	1 cut(s)	2319
BspEI	TCCGGA	2 cut(s)	196, 1009
BspFNI	CGCG	2 cut(s)	968, 1004
BspHI	TCATGA	2 cut(s)	1849, 2313
BspLI	GGNNCC	7 cut(s)	39, 1357, 1898, 1899, 2231, 2808, 3228
BspMAI	CTGCAG	1 cut(s)	1702
BspMI	ACCTGC	1 cut(s)	1357
BspPI	GGATC	1 cut(s)	2121
BspQI	GCTCTTC	3 cut(s)	905, 1698, 2277
BspTNI	GGTCTC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	991
BsrDI	GCAATG	4 cut(s)	1767, 2142, 2598, 2749
BsrFI	RCCGGY	2 cut(s)	175, 203
BsrI	ACTGG	6 cut(s)	807, 1107, 1441, 1902, 2029, 3194
BssAI	RCCGGY	2 cut(s)	175, 203
BssECI	CCNNGG	6 cut(s)	1159, 1338, 1410, 1480, 1825, 2928
BssNI	GRCGYC	1 cut(s)	65
BssSI	CACGAG	1 cut(s)	2724
BssT1I	CCWWGG	1 cut(s)	1338
Bst2BI	CACGAG	1 cut(s)	2724
Bst2UI	CCWGG	6 cut(s)	779, 1411, 1826, 2532, 2811, 2930
Bst4CI	ACNGT	8 cut(s)	91, 121, 1426, 1444, 1780, 2005, 2560, 2780
Bst6I	CTCTTC	9 cut(s)	51, 132, 641, 905, 1698, 2277, 2382, 2509, 3118
BstACI	GRCGYC	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	2079
BstC8I	GCNNGC	8 cut(s)	504, 970, 1354, 1806, 2047, 2061, 2991, 3162
BstDEI	CTNAG	8 cut(s)	533, 1070, 1227, 1917, 2396, 2510, 2590, 2948
BstDSI	CCRYGG	1 cut(s)	1159
BstEII	GGTNACC	3 cut(s)	185, 1787, 2923
BstENI	CCTNNNNNAGG	1 cut(s)	1063
BstF5I	GGATG	7 cut(s)	96, 113, 161, 1018, 1329, 1381, 1672
BstFNI	CGCG	2 cut(s)	968, 1004
BstH2I	RGCGCY	1 cut(s)	2396
BstHHI	GCGC	4 cut(s)	1259, 1521, 2051, 2395
BstMAI	GTCTC	4 cut(s)	194, 643, 1325, 2944
BstMCI	CGRYCG	1 cut(s)	1428
BstNI	CCWGG	6 cut(s)	779, 1411, 1826, 2532, 2811, 2930
BstNSI	RCATGY	2 cut(s)	506, 631
BstPI	GGTNACC	3 cut(s)	185, 1787, 2923
BstSCI	CCNGG	7 cut(s)	777, 1409, 1480, 1824, 2530, 2809, 2928
BstSFI	CTRYAG	1 cut(s)	1698
BstUI	CGCG	2 cut(s)	968, 1004
BstV1I	GCAGC	9 cut(s)	460, 1462, 1921, 1972, 2197, 2200, 3064, 3086, 3176
BstV2I	GAAGAC	2 cut(s)	68, 1550
BstX2I	RGATCY	2 cut(s)	1579, 1952
BstXI	CCANNNNNNTGG	1 cut(s)	1372
BstYI	RGATCY	2 cut(s)	1579, 1952
Bsu15I	ATCGAT	1 cut(s)	2319
BsuI	GTATCC	2 cut(s)	1633, 3208
BsuTUI	ATCGAT	1 cut(s)	2319
BtgI	CCRYGG	1 cut(s)	1159
BtrI	CACGTC	1 cut(s)	892
BtsCI	GGATG	7 cut(s)	96, 113, 161, 1018, 1329, 1381, 1672
BtsI	GCAGTG	2 cut(s)	1695, 2658
BtsIMutI	CAGTG	6 cut(s)	1224, 1449, 1695, 2183, 2658, 3026
BveI	ACCTGC	1 cut(s)	1357
Cac8I	GCNNGC	8 cut(s)	504, 970, 1354, 1806, 2047, 2061, 2991, 3162
CaiI	CAGNNNCTG	2 cut(s)	2024, 2870
CciI	TCATGA	2 cut(s)	1849, 2313
CfoI	GCGC	4 cut(s)	1259, 1521, 2051, 2395
Cfr10I	RCCGGY	2 cut(s)	175, 203
Cfr13I	GGNCC	7 cut(s)	996, 1141, 1146, 1897, 2230, 2807, 2932
ClaI	ATCGAT	1 cut(s)	2319
CseI	GACGC	2 cut(s)	73, 2933
Csp6I	GTAC	8 cut(s)	542, 618, 955, 1222, 1319, 2372, 2769, 2802
CspAI	ACCGGT	1 cut(s)	203
CviQI	GTAC	8 cut(s)	542, 618, 955, 1222, 1319, 2372, 2769, 2802
DdeI	CTNAG	8 cut(s)	533, 1070, 1227, 1917, 2396, 2510, 2590, 2948
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	2007
Eam1104I	CTCTTC	9 cut(s)	51, 132, 641, 905, 1698, 2277, 2382, 2509, 3118
EarI	CTCTTC	9 cut(s)	51, 132, 641, 905, 1698, 2277, 2382, 2509, 3118
EciI	GGCGGA	1 cut(s)	1376
Eco130I	CCWWGG	1 cut(s)	1338
Eco24I	GRGCYC	2 cut(s)	331, 1358
Eco31I	GGTCTC	1 cut(s)	194
Eco32I	GATATC	2 cut(s)	1798, 1876
Eco47I	GGWCC	4 cut(s)	996, 1141, 1897, 2807
Eco57I	CTGAAG	2 cut(s)	781, 2444
Eco88I	CYCGRG	1 cut(s)	1148
Eco91I	GGTNACC	3 cut(s)	185, 1787, 2923
EcoNI	CCTNNNNNAGG	1 cut(s)	1063
EcoO109I	RGGNCCY	2 cut(s)	1897, 2932
EcoO65I	GGTNACC	3 cut(s)	185, 1787, 2923
EcoRI	GAATTC	1 cut(s)	1609
EcoRII	CCWGG	6 cut(s)	777, 1409, 1824, 2530, 2809, 2928
EcoRV	GATATC	2 cut(s)	1798, 1876
EcoT14I	CCWWGG	1 cut(s)	1338
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	2 cut(s)	331, 1358
ErhI	CCWWGG	1 cut(s)	1338
Esp3I	CGTCTC	1 cut(s)	643
FalI	AAGNNNNNCTT	2 cut(s)	2379, 2411
FaqI	GGGAC	4 cut(s)	1177, 1910, 2995, 3023
FauI	CCCGC	2 cut(s)	1345, 2972
FauNDI	CATATG	1 cut(s)	2440
FbaI	TGATCA	3 cut(s)	1681, 2332, 2818
FokI	GGATG	7 cut(s)	83, 100, 148, 1025, 1336, 1388, 1679
FriOI	GRGCYC	2 cut(s)	331, 1358
FspBI	CTAG	6 cut(s)	18, 558, 668, 2478, 2570, 2691
FspI	TGCGCA	1 cut(s)	1258
GlaI	GCGC	4 cut(s)	1258, 1520, 2050, 2394
GsaI	CCCAGC	2 cut(s)	1519, 1539
GsuI	CTGGAG	1 cut(s)	899
HaeII	RGCGCY	1 cut(s)	2396
HapII	CCGG	9 cut(s)	176, 183, 190, 197, 204, 218, 1010, 1144, 1482
HgaI	GACGC	2 cut(s)	73, 2933
HhaI	GCGC	4 cut(s)	1259, 1521, 2051, 2395
Hin1I	GRCGYC	1 cut(s)	65
Hin6I	GCGC	4 cut(s)	1257, 1519, 2049, 2393
HinP1I	GCGC	4 cut(s)	1257, 1519, 2049, 2393
HincII	GTYRAC	1 cut(s)	1021
HindII	GTYRAC	1 cut(s)	1021
HindIII	AAGCTT	4 cut(s)	723, 793, 1509, 2891
HpaI	GTTAAC	1 cut(s)	1021
HpaII	CCGG	9 cut(s)	176, 183, 190, 197, 204, 218, 1010, 1144, 1482
Hpy99I	CGWCG	4 cut(s)	687, 701, 935, 1087
HpyCH4III	ACNGT	8 cut(s)	91, 121, 1426, 1444, 1780, 2005, 2560, 2780
HpyCH4IV	ACGT	5 cut(s)	620, 685, 891, 2106, 2265
HpyF3I	CTNAG	8 cut(s)	533, 1070, 1227, 1917, 2396, 2510, 2590, 2948
HpySE526I	ACGT	5 cut(s)	620, 685, 891, 2106, 2265
Hsp92I	GRCGYC	1 cut(s)	65
HspAI	GCGC	4 cut(s)	1257, 1519, 2049, 2393
KflI	GGGWCCC	1 cut(s)	1897
Kpn2I	TCCGGA	2 cut(s)	196, 1009
Ksp22I	TGATCA	3 cut(s)	1681, 2332, 2818
KspAI	GTTAAC	1 cut(s)	1021
LguI	GCTCTTC	3 cut(s)	905, 1698, 2277
LmnI	GCTCC	8 cut(s)	43, 499, 988, 1361, 1827, 2533, 3179, 3232
Lsp1109I	GCAGC	9 cut(s)	460, 1462, 1921, 1972, 2197, 2200, 3064, 3086, 3176
LweI	GCATC	7 cut(s)	295, 337, 359, 1314, 1657, 2464, 3142
MaeI	CTAG	6 cut(s)	18, 558, 668, 2478, 2570, 2691
MaeII	ACGT	5 cut(s)	620, 685, 891, 2106, 2265
MaeIII	GTNAC	8 cut(s)	143, 185, 281, 1123, 1418, 1787, 2726, 2923
MbiI	CCGCTC	1 cut(s)	991
MflI	RGATCY	2 cut(s)	1579, 1952
MhlI	GDGCHC	3 cut(s)	331, 1358, 3184
MlsI	TGGCCA	1 cut(s)	2009
MluI	ACGCGT	1 cut(s)	966
MluNI	TGGCCA	1 cut(s)	2009
MlyI	GAGTC	9 cut(s)	523, 680, 869, 1120, 1557, 2489, 2580, 2696, 3040
MmeI	TCCRAC	4 cut(s)	654, 706, 954, 1023
Mox20I	TGGCCA	1 cut(s)	2009
Mph1103I	ATGCAT	1 cut(s)	352
MroI	TCCGGA	2 cut(s)	196, 1009
MroXI	GAANNNNTTC	2 cut(s)	773, 2913
MscI	TGGCCA	1 cut(s)	2009
MseI	TTAA	7 cut(s)	1020, 1994, 2054, 2465, 2579, 2628, 3116
MslI	CAYNNNNRTG	3 cut(s)	89, 869, 2781
Msp20I	TGGCCA	1 cut(s)	2009
MspA1I	CMGCKG	2 cut(s)	2422, 3077
MspI	CCGG	9 cut(s)	176, 183, 190, 197, 204, 218, 1010, 1144, 1482
MspR9I	CCNGG	7 cut(s)	779, 1411, 1482, 1826, 2532, 2811, 2930
Mva1269I	GAATGC	1 cut(s)	2194
MvaI	CCWGG	6 cut(s)	779, 1411, 1826, 2532, 2811, 2930
MvnI	CGCG	2 cut(s)	968, 1004
NciI	CCSGG	1 cut(s)	1482
NdeI	CATATG	1 cut(s)	2440
NlaIV	GGNNCC	7 cut(s)	39, 1357, 1898, 1899, 2231, 2808, 3228
NmeAIII	GCCGAG	1 cut(s)	859
NmuCI	GTSAC	7 cut(s)	143, 185, 281, 1123, 1418, 1787, 2726
NsbI	TGCGCA	1 cut(s)	1258
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	2 cut(s)	506, 631
OliI	CACNNNNGTG	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	506
PagI	TCATGA	2 cut(s)	1849, 2313
PciI	ACATGT	1 cut(s)	627
PciSI	GCTCTTC	3 cut(s)	905, 1698, 2277
PctI	GAATGC	1 cut(s)	2194
PdmI	GAANNNNTTC	2 cut(s)	773, 2913
PfeI	GAWTC	8 cut(s)	193, 214, 336, 735, 1006, 2620, 2720, 3016
PflFI	GACNNNGTC	1 cut(s)	1424
PflMI	CCANNNNNTGG	1 cut(s)	2024
PfoI	TCCNGGA	1 cut(s)	777
PinAI	ACCGGT	1 cut(s)	203
PleI	GAGTC	9 cut(s)	523, 679, 868, 1120, 1556, 2489, 2580, 2695, 3039
PpsI	GAGTC	9 cut(s)	523, 679, 868, 1120, 1556, 2489, 2580, 2695, 3039
PpuMI	RGGWCCY	1 cut(s)	1897
PscI	ACATGT	1 cut(s)	627
PshBI	ATTAAT	2 cut(s)	2054, 2579
PsiI	TTATAA	2 cut(s)	1382, 2897
Psp5II	RGGWCCY	1 cut(s)	1897
Psp6I	CCWGG	6 cut(s)	777, 1409, 1824, 2530, 2809, 2928
PspEI	GGTNACC	3 cut(s)	185, 1787, 2923
PspFI	CCCAGC	2 cut(s)	1515, 1535
PspGI	CCWGG	6 cut(s)	777, 1409, 1824, 2530, 2809, 2928
PspN4I	GGNNCC	7 cut(s)	39, 1357, 1898, 1899, 2231, 2808, 3228
PspPI	GGNCC	7 cut(s)	996, 1141, 1146, 1897, 2230, 2807, 2932
PspPPI	RGGWCCY	1 cut(s)	1897
PstI	CTGCAG	1 cut(s)	1702
PstNI	CAGNNNCTG	2 cut(s)	2024, 2870
PsuI	RGATCY	2 cut(s)	1579, 1952
PsyI	GACNNNGTC	1 cut(s)	1424
PvuII	CAGCTG	2 cut(s)	2422, 3077
RsaI	GTAC	8 cut(s)	543, 619, 956, 1223, 1320, 2373, 2770, 2803
RsaNI	GTAC	8 cut(s)	542, 618, 955, 1222, 1319, 2372, 2769, 2802
RseI	CAYNNNNRTG	3 cut(s)	89, 869, 2781
SapI	GCTCTTC	3 cut(s)	905, 1698, 2277
SaqAI	TTAA	7 cut(s)	1020, 1994, 2054, 2465, 2579, 2628, 3116
Sau96I	GGNCC	7 cut(s)	996, 1141, 1146, 1897, 2230, 2807, 2932
SchI	GAGTC	9 cut(s)	523, 680, 869, 1120, 1557, 2489, 2580, 2696, 3040
ScrFI	CCNGG	7 cut(s)	779, 1411, 1482, 1826, 2532, 2811, 2930
SduI	GDGCHC	3 cut(s)	331, 1358, 3184
SfaNI	GCATC	7 cut(s)	295, 337, 359, 1314, 1657, 2464, 3142
SfcI	CTRYAG	1 cut(s)	1698
SinI	GGWCC	4 cut(s)	996, 1141, 1897, 2807
SmiMI	CAYNNNNRTG	3 cut(s)	89, 869, 2781
SmlI	CTYRAG	6 cut(s)	277, 314, 940, 1864, 1925, 2255
SmoI	CTYRAG	6 cut(s)	277, 314, 940, 1864, 1925, 2255
SphI	GCATGC	1 cut(s)	506
SspI	AATATT	2 cut(s)	2912, 3216
SspMI	CTAG	6 cut(s)	18, 558, 668, 2478, 2570, 2691
StyD4I	CCNGG	7 cut(s)	777, 1409, 1480, 1824, 2530, 2809, 2928
StyI	CCWWGG	1 cut(s)	1338
TaaI	ACNGT	8 cut(s)	91, 121, 1426, 1444, 1780, 2005, 2560, 2780
TaiI	ACGT	5 cut(s)	623, 688, 894, 2109, 2268
TaqII	GACCGA	1 cut(s)	343
TatI	WGTACW	2 cut(s)	1221, 2371
TauI	GCSGC	4 cut(s)	583, 810, 994, 1535
TfiI	GAWTC	8 cut(s)	193, 214, 336, 735, 1006, 2620, 2720, 3016
Tru1I	TTAA	7 cut(s)	1020, 1994, 2054, 2465, 2579, 2628, 3116
Tru9I	TTAA	7 cut(s)	1020, 1994, 2054, 2465, 2579, 2628, 3116
TscAI	CASTG	6 cut(s)	1231, 1449, 1702, 2190, 2658, 3026
TseFI	GTSAC	7 cut(s)	143, 185, 281, 1123, 1418, 1787, 2726
TseI	GCWGC	9 cut(s)	473, 1475, 1934, 1985, 2210, 2213, 3074, 3077, 3164
Tsp45I	GTSAC	7 cut(s)	143, 185, 281, 1123, 1418, 1787, 2726
TspDTI	ATGAA	6 cut(s)	865, 1557, 1728, 1866, 2103, 2922
TspGWI	ACGGA	3 cut(s)	1336, 1666, 2633
TspRI	CASTG	6 cut(s)	1231, 1449, 1702, 2190, 2658, 3026
Tth111I	GACNNNGTC	1 cut(s)	1424
Van91I	CCANNNNNTGG	1 cut(s)	2024
VpaK11BI	GGWCC	4 cut(s)	996, 1141, 1897, 2807
VspI	ATTAAT	2 cut(s)	2054, 2579
XagI	CCTNNNNNAGG	1 cut(s)	1063
XapI	RAATTY	5 cut(s)	1298, 1609, 2030, 2090, 2467
XbaI	TCTAGA	1 cut(s)	667
XceI	RCATGY	2 cut(s)	506, 631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1523
XmnI	GAANNNNTTC	2 cut(s)	773, 2913
XspI	CTAG	6 cut(s)	18, 558, 668, 2478, 2570, 2691
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.