Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008771

Physical Location & Seq

Genomic Coordinates Reverse (-)

6068962 .. 6069387

Gene Structure 426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0070900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGGGGTTAAAGTAGATCATTATAAGGTTCTAGATTTACCCTCTGGTGAGGAAGGTGCTAAGCTCACACACAGAGAGATTTTGAAGGCATACAGAGCAAAGGCGTTGCTGTTGCATCCAGACAAGAGACCAGACTATCCCGGCGCCAACGCCGAGTTTCAACAGCTCAGTTCATCCTATGAGATTCTCAAGGACCCGAAATCCCGGGCAGAGTTCGACGCTGCTCTAGAGCTCGACAACACTCTAGAGCTCGAGAAGGAGTACAATGAACTGAGTCTTGTTACTATGTTGATTCTGGTTGCTGCTCTTTCCATTTTGTATGTGAGACAAGTGGGAATTTCAATGGCTAAACGCACCGTGTATGCAGCGGTGTATGTAGTACATTGGATATATAGCCTTGTTAGGAATGTGTGTCTACACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000347 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0051276 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM_N MCM_OB

Protein Analysis

141

Amino Acids

16.05

Weight (kDa)

6.51

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 73	6.6e-17	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44635 AT5G44635
fragaria_vesca	FvH4_3g13360 FvH4_3g13360 FvH4_3g13360 FvH4_3g13360
malus_domestica	MD05G1242400.v1.1 MD10G1224200.v1.1
prunus_persica	Prupe.4G121000_v2.0.a1 Prupe.4G121000_v2.0.a1 Prupe.4G121000_v2.0.a1
pyrus_communis	pycom05g21890 pycom10g18820
rosa_chinensis	RchiOBHm_Chr5g0022071
rosa_laevigata	RLG00000032641
rosa_multiflora	Rmu_sc0006966.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056860
rosa_rugosa	Rorug05G0070900
rosa_samantha	Rh5AG158900 Rh5BG158200 Rh5CG172600 Rh5DG158400
rosa_wichuraiana	Rw5G014180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	415
AciI	CCGC	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	336
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	263, 381
AgsI	TTSAA	3 cut(s)	85, 161, 342
AluBI	AGCT	4 cut(s)	64, 166, 232, 250
AluI	AGCT	4 cut(s)	64, 166, 232, 250
Alw21I	GWGCWC	2 cut(s)	234, 252
Alw26I	GTCTC	2 cut(s)	121, 319
Ama87I	CYCGRG	2 cut(s)	204, 251
ApeKI	GCWGC	3 cut(s)	221, 302, 365
ApoI	RAATTY	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	3 cut(s)	141, 205, 206
AsuHPI	GGTGA	1 cut(s)	59
AvaI	CYCGRG	2 cut(s)	204, 251
AvaII	GGWCC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	2 cut(s)	234, 252
Bbv12I	GWGCWC	2 cut(s)	234, 252
BbvI	GCAGC	3 cut(s)	208, 289, 377
BcnI	CCSGG	3 cut(s)	141, 205, 206
BcoDI	GTCTC	2 cut(s)	121, 319
BfaI	CTAG	4 cut(s)	32, 227, 245, 424
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	3 cut(s)	222, 303, 366
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	3 cut(s)	223, 304, 367
Bme1390I	CCNGG	3 cut(s)	141, 205, 206
Bme18I	GGWCC	1 cut(s)	193
BmeT110I	CYCGRG	2 cut(s)	204, 251
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	145, 195
BmrFI	CCNGG	3 cut(s)	141, 205, 206
BmsI	GCATC	1 cut(s)	124
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	173
BpuMI	CCSGG	3 cut(s)	141, 205, 206
BsaHI	GRCGYC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	115, 173
BseMII	CTCAG	2 cut(s)	181, 263
BseXI	GCAGC	3 cut(s)	208, 289, 377
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	2 cut(s)	234, 252
BsiHKCI	CYCGRG	2 cut(s)	204, 251
BsiSI	CCGG	2 cut(s)	141, 205
BsmAI	GTCTC	2 cut(s)	121, 319
Bso31I	GGTCTC	1 cut(s)	121
BsoBI	CYCGRG	2 cut(s)	204, 251
Bsp1286I	GDGCHC	2 cut(s)	234, 252
Bsp143I	GATC	1 cut(s)	16
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	180, 264
BspLI	GGNNCC	2 cut(s)	145, 195
BspT107I	GGYRCC	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	16
BssNI	GRCGYC	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	358
BstACI	GRCGYC	1 cut(s)	144
BstDEI	CTNAG	3 cut(s)	60, 167, 272
BstF5I	GGATG	2 cut(s)	115, 173
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	2 cut(s)	121, 319
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstSCI	CCNGG	3 cut(s)	139, 203, 204
BstV1I	GCAGC	3 cut(s)	208, 289, 377
BtsCI	GGATG	2 cut(s)	115, 173
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	193
Cfr9I	CCCGGG	1 cut(s)	204
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	2 cut(s)	262, 380
CviJI	RGCY	6 cut(s)	64, 166, 232, 250, 347, 396
CviKI_1	RGCY	6 cut(s)	64, 166, 232, 250, 347, 396
CviQI	GTAC	2 cut(s)	262, 380
DdeI	CTNAG	3 cut(s)	60, 167, 272
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Ecl136II	GAGCTC	2 cut(s)	232, 250
Eco24I	GRGCYC	2 cut(s)	234, 252
Eco31I	GGTCTC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	2 cut(s)	232, 250
Eco88I	CYCGRG	2 cut(s)	204, 251
EcoICRI	GAGCTC	2 cut(s)	232, 250
EcoO109I	RGGNCCY	1 cut(s)	193
EcoT38I	GRGCYC	2 cut(s)	234, 252
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaiI	YATR	9 cut(s)	24, 91, 180, 287, 321, 363, 375, 391, 393
FblI	GTMKAC	1 cut(s)	415
Fnu4HI	GCNGC	3 cut(s)	222, 303, 366
FokI	GGATG	2 cut(s)	102, 160
FriOI	GRGCYC	2 cut(s)	234, 252
Fsp4HI	GCNGC	3 cut(s)	222, 303, 366
FspBI	CTAG	4 cut(s)	32, 227, 245, 424
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	3 cut(s)	222, 303, 366
HaeII	RGCGCY	1 cut(s)	147
HapII	CCGG	2 cut(s)	141, 205
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	3 cut(s)	184, 274, 292
HpaII	CCGG	2 cut(s)	141, 205
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188III	TCNNGA	5 cut(s)	32, 119, 227, 245, 253
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	47, 79, 250
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	2 cut(s)	115, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	3 cut(s)	60, 167, 272
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	6 cut(s)	30, 132, 144, 154, 218, 281
Lsp1109I	GCAGC	3 cut(s)	208, 289, 377
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	4 cut(s)	32, 227, 245, 424
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	234, 252
MluCI	AATT	1 cut(s)	336
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	2 cut(s)	43, 52
MseI	TTAA	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	368
MspI	CCGG	2 cut(s)	141, 205
MspR9I	CCNGG	3 cut(s)	141, 205, 206
MwoI	GCNNNNNNNGC	1 cut(s)	95
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	3 cut(s)	141, 205, 206
NdeII	GATC	1 cut(s)	16
NlaIV	GGNNCC	2 cut(s)	145, 195
NmeAIII	GCCGAG	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	184, 292
PkrI	GCNGC	3 cut(s)	223, 304, 367
PleI	GAGTC	1 cut(s)	282
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	282
PpuMI	RGGWCCY	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	24
Psp124BI	GAGCTC	2 cut(s)	234, 252
Psp5II	RGGWCCY	1 cut(s)	193
PspN4I	GGNNCC	2 cut(s)	145, 195
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
RsaI	GTAC	2 cut(s)	263, 381
RsaNI	GTAC	2 cut(s)	262, 380
SacI	GAGCTC	2 cut(s)	234, 252
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	3 cut(s)	222, 303, 366
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	283
ScrFI	CCNGG	3 cut(s)	141, 205, 206
SduI	GDGCHC	2 cut(s)	234, 252
SetI	ASST	6 cut(s)	30, 58, 66, 168, 234, 252
SfaNI	GCATC	1 cut(s)	124
SfoI	GGCGCC	1 cut(s)	145
Sfr274I	CTCGAG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	193
SlaI	CTCGAG	1 cut(s)	251
SmaI	CCCGGG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	188, 251
SmoI	CTYRAG	2 cut(s)	188, 251
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	368
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	4 cut(s)	32, 227, 245, 424
SstI	GAGCTC	2 cut(s)	234, 252
StyD4I	CCNGG	3 cut(s)	139, 203, 204
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	3 cut(s)	216, 234, 252
TasI	AATT	1 cut(s)	336
TatI	WGTACW	2 cut(s)	261, 379
TfiI	GAWTC	2 cut(s)	184, 292
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseI	GCWGC	3 cut(s)	221, 302, 365
TspDTI	ATGAA	2 cut(s)	162, 282
TspMI	CCCGGG	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	336
XbaI	TCTAGA	3 cut(s)	31, 226, 244
XhoI	CTCGAG	1 cut(s)	251
XmaI	CCCGGG	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	415
XspI	CTAG	4 cut(s)	32, 227, 245, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.