Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007358.1

Orthogroup ID

OG0019488

Physical Location & Seq

Genomic Coordinates Forward (+)

82446 .. 86874

Gene Structure 4429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atgaggtgtagcaaggcagttactgcggtggcatttcgggtctccggtgatttcacgttttctgcatttttcggccgttccaccacccatagcatggagtcctcgtcttcgtggttcgacccaggccagtggctagatatggtggttgaccggcggcgcgtggggcccaagcgcagcggcttgtggcggcgcatgaaggtgcgtctggccgttcctggcgaacttgctgttgcgtctccgcaaggcaaggatggaaggatgatgttggggggattgtggttatggcagagcggatctgttctgtctagatcaatccatcgagctgatctgggaatgggtttgttaggctgggctggcatggttccatggttcggacgagaggatggcatgatgatggcggcgcaccggacatttgggctatggattgcgcgtcgttctgctgcttgttgggacgggccttctaatgagacattcctttctggttttgggtcatcgaaaaagtctagctgtgccatagacgagcatttttggctttctagtgggtctttcctgtctggttttgggtgggcggcgatggctatttggagcagtggtgaattgacgatgaaatccagaccaaacccaaaagacatagtgatctacaatcaaatccgggatatatcagattttggtccaccttttccggccatggcgaacatagtgaagcacatcctagcaaagccgatccagcaagaggaccaagtgaccaaggtggcagatgaggccagctcattgaagcaggactgtgcggagctgaaatcgaagacggataagctagcagttctactatggcaagtcgcccaggccatgaaagaaccacctctgactctctctttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000011 GO:0000322 GO:0000323 GO:0000324 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006996 GO:0007033 GO:0008150 GO:0009607 GO:0009987 GO:0016043 GO:0030447 GO:0030448 GO:0036180 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044424 GO:0044444 GO:0044464 GO:0048308 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

292

Amino Acids

32.29

Weight (kDa)

9.59

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7792	PF25055	235 - 285	3.3e-11	Domain of unknown function (DUF7792)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019488)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000028192
rosa_multiflora	Rmu_sc0007358.1_g000010
rosa_roxburghii	Rroxscaffold_4G00309170
rosa_samantha	Rh4DG242700 Rh5DG571000 Rh6CG326800 Rh7AG391800 Rh7CG410700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	291
AccII	CGCG	2 cut(s)	159, 430
AciI	CCGC	9 cut(s)	26, 154, 177, 187, 239, 291, 398, 569, 788
AclWI	GGATC	2 cut(s)	301, 718
AcoI	YGGCCR	3 cut(s)	73, 207, 684
AfiI	CCNNNNNNNGG	3 cut(s)	94, 371, 733
AgsI	TTSAA	1 cut(s)	775
AjnI	CCWGG	3 cut(s)	121, 214, 840
AluBI	AGCT	5 cut(s)	323, 507, 768, 793, 814
AluI	AGCT	5 cut(s)	323, 507, 768, 793, 814
Alw26I	GTCTC	3 cut(s)	46, 240, 461
AlwI	GGATC	2 cut(s)	301, 718
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	8 cut(s)	73, 124, 164, 207, 455, 684, 762, 843
ApaI	GGGCCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	174, 440
AspLEI	GCGC	5 cut(s)	159, 174, 192, 403, 430
AspS9I	GGNCC	5 cut(s)	164, 165, 455, 671, 736
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	59, 605
AsuNHI	GCTAGC	1 cut(s)	814
AvaII	GGWCC	2 cut(s)	671, 736
BaeGI	GKGCMC	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	99, 809
BbvI	GCAGC	2 cut(s)	186, 427
BccI	CCATC	5 cut(s)	245, 324, 377, 388, 568
BceAI	ACGGC	2 cut(s)	60, 194
BciT130I	CCWGG	3 cut(s)	123, 216, 842
BcnI	CCSGG	1 cut(s)	653
BcoDI	GTCTC	3 cut(s)	46, 240, 461
BfaI	CTAG	6 cut(s)	134, 306, 504, 537, 713, 815
BisI	GCNGC	7 cut(s)	155, 175, 178, 188, 399, 441, 570
BlsI	GCNGC	7 cut(s)	156, 176, 179, 189, 400, 442, 571
Bme1390I	CCNGG	4 cut(s)	123, 216, 653, 842
Bme18I	GGWCC	2 cut(s)	671, 736
BmgT120I	GGNCC	5 cut(s)	164, 165, 455, 671, 736
BmiI	GGNNCC	3 cut(s)	165, 166, 363
BmrFI	CCNGG	4 cut(s)	123, 216, 653, 842
BmtI	GCTAGC	1 cut(s)	818
BpiI	GAAGAC	2 cut(s)	99, 809
BplI	GAGNNNNNCTC	2 cut(s)	752, 784
BpuMI	CCSGG	1 cut(s)	653
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	5 cut(s)	121, 365, 687, 747, 840
BsaWI	WCCGGW	2 cut(s)	44, 405
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 577, 607
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 371, 733
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	127
BseBI	CCWGG	3 cut(s)	123, 216, 842
BseDI	CCNNGG	5 cut(s)	121, 365, 687, 747, 840
BseGI	GGATG	4 cut(s)	256, 264, 388, 708
BseLI	CCNNNNNNNGG	3 cut(s)	94, 371, 733
BseNI	ACTGG	1 cut(s)	127
BseSI	GKGCMC	1 cut(s)	168
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	186, 427
BseYI	CCCAGC	1 cut(s)	348
Bsh1236I	CGCG	2 cut(s)	159, 430
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	8 cut(s)	75, 126, 166, 209, 457, 686, 764, 845
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	5 cut(s)	45, 151, 406, 652, 683
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	94, 371, 733
BsmAI	GTCTC	3 cut(s)	46, 240, 461
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	8 cut(s)	75, 126, 166, 209, 457, 686, 764, 845
Bso31I	GGTCTC	1 cut(s)	46
Bsp120I	GGGCCC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	293, 308, 325, 636, 723
Bsp19I	CCATGG	2 cut(s)	365, 687
BspACI	CCGC	9 cut(s)	26, 154, 177, 187, 239, 291, 398, 569, 788
BspANI	GGCC	8 cut(s)	75, 126, 166, 209, 457, 686, 764, 845
BspFNI	CGCG	2 cut(s)	159, 430
BspLI	GGNNCC	3 cut(s)	165, 166, 363
BspOI	GCTAGC	1 cut(s)	818
BspPI	GGATC	2 cut(s)	301, 718
BspTNI	GGTCTC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	291
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	5 cut(s)	121, 365, 687, 747, 840
BssMI	GATC	5 cut(s)	293, 308, 325, 636, 723
BssT1I	CCWWGG	3 cut(s)	365, 687, 747
Bst2UI	CCWGG	3 cut(s)	123, 216, 842
Bst4CI	ACNGT	1 cut(s)	785
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	355, 766, 816
BstDSI	CCRYGG	2 cut(s)	365, 687
BstF5I	GGATG	4 cut(s)	256, 264, 388, 708
BstFNI	CGCG	2 cut(s)	159, 430
BstHHI	GCGC	5 cut(s)	159, 174, 192, 403, 430
BstKTI	GATC	5 cut(s)	296, 311, 328, 639, 726
BstMAI	GTCTC	3 cut(s)	46, 240, 461
BstMBI	GATC	5 cut(s)	293, 308, 325, 636, 723
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 163, 354, 529, 575, 727, 761
BstNI	CCWGG	3 cut(s)	123, 216, 842
BstSCI	CCNGG	4 cut(s)	121, 214, 651, 840
BstSLI	GKGCMC	1 cut(s)	168
BstUI	CGCG	2 cut(s)	159, 430
BstV1I	GCAGC	2 cut(s)	186, 427
BstV2I	GAAGAC	2 cut(s)	99, 809
BstX2I	RGATCY	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	293
BstZI	CGGCCG	1 cut(s)	73
BsuRI	GGCC	8 cut(s)	75, 126, 166, 209, 457, 686, 764, 845
BtgI	CCRYGG	2 cut(s)	365, 687
BtgZI	GCGATG	1 cut(s)	587
BtsCI	GGATG	4 cut(s)	256, 264, 388, 708
BtsI	GCAGTG	1 cut(s)	595
BtsIMutI	CAGTG	2 cut(s)	134, 595
Cac8I	GCNNGC	3 cut(s)	355, 766, 816
CaiI	CAGNNNCTG	1 cut(s)	23
CfoI	GCGC	5 cut(s)	159, 174, 192, 403, 430
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	5 cut(s)	164, 165, 455, 671, 736
CseI	GACGC	3 cut(s)	191, 222, 419
CviAII	CATG	7 cut(s)	94, 193, 358, 366, 388, 688, 847
DpnI	GATC	5 cut(s)	295, 310, 327, 638, 725
DpnII	GATC	5 cut(s)	293, 308, 325, 636, 723
EaeI	YGGCCR	3 cut(s)	73, 207, 684
EagI	CGGCCG	1 cut(s)	73
EclXI	CGGCCG	1 cut(s)	73
Eco130I	CCWWGG	3 cut(s)	365, 687, 747
Eco24I	GRGCYC	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	671, 736
Eco52I	CGGCCG	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	164
EcoRII	CCWGG	3 cut(s)	121, 214, 840
EcoT14I	CCWWGG	3 cut(s)	365, 687, 747
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	3 cut(s)	365, 687, 747
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	7 cut(s)	97, 196, 361, 369, 391, 691, 850
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	7 cut(s)	93, 192, 357, 365, 387, 687, 846
Fnu4HI	GCNGC	7 cut(s)	155, 175, 178, 188, 399, 441, 570
FokI	GGATG	4 cut(s)	263, 271, 395, 695
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	7 cut(s)	155, 175, 178, 188, 399, 441, 570
FspBI	CTAG	6 cut(s)	134, 306, 504, 537, 713, 815
GlaI	GCGC	5 cut(s)	158, 173, 191, 402, 429
GluI	GCNGC	7 cut(s)	155, 175, 178, 188, 399, 441, 570
GsaI	CCCAGC	1 cut(s)	352
HaeIII	GGCC	8 cut(s)	75, 126, 166, 209, 457, 686, 764, 845
HapII	CCGG	5 cut(s)	45, 151, 406, 652, 683
HgaI	GACGC	3 cut(s)	191, 222, 419
HhaI	GCGC	5 cut(s)	159, 174, 192, 403, 430
Hin1II	CATG	7 cut(s)	97, 196, 361, 369, 391, 691, 850
Hin6I	GCGC	5 cut(s)	157, 172, 190, 401, 428
HinP1I	GCGC	5 cut(s)	157, 172, 190, 401, 428
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	98, 865
HpaII	CCGG	5 cut(s)	45, 151, 406, 652, 683
HphI	GGTGA	2 cut(s)	59, 605
Hpy166II	GTNNAC	2 cut(s)	148, 674
Hpy188I	TCNGA	3 cut(s)	374, 664, 864
Hpy188III	TCNNGA	2 cut(s)	306, 612
Hpy8I	GTNNAC	2 cut(s)	148, 674
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	3 cut(s)	190, 249, 468
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 163, 354, 529, 575, 727, 761
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	7 cut(s)	97, 196, 361, 369, 391, 691, 850
HspAI	GCGC	5 cut(s)	157, 172, 190, 401, 428
Kzo9I	GATC	5 cut(s)	293, 308, 325, 636, 723
LmnI	GCTCC	2 cut(s)	585, 790
Lsp1109I	GCAGC	2 cut(s)	186, 427
MaeI	CTAG	6 cut(s)	134, 306, 504, 537, 713, 815
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	2 cut(s)	19, 742
MalI	GATC	5 cut(s)	295, 310, 327, 638, 725
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	5 cut(s)	293, 308, 325, 636, 723
MboII	GAAGA	2 cut(s)	99, 814
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	596
MlyI	GAGTC	2 cut(s)	107, 859
MnlI	CCTC	5 cut(s)	112, 373, 727, 754, 870
MslI	CAYNNNNRTG	2 cut(s)	197, 392
MspA1I	CMGCKG	1 cut(s)	177
MspI	CCGG	5 cut(s)	45, 151, 406, 652, 683
MspR9I	CCNGG	4 cut(s)	123, 216, 653, 842
MvaI	CCWGG	3 cut(s)	123, 216, 842
MvnI	CGCG	2 cut(s)	159, 430
MwoI	GCNNNNNNNGC	7 cut(s)	23, 163, 354, 529, 575, 727, 761
NciI	CCSGG	1 cut(s)	653
NcoI	CCATGG	2 cut(s)	365, 687
NdeII	GATC	5 cut(s)	293, 308, 325, 636, 723
NheI	GCTAGC	1 cut(s)	814
NlaIII	CATG	7 cut(s)	97, 196, 361, 369, 391, 691, 850
NlaIV	GGNNCC	3 cut(s)	165, 166, 363
NmuCI	GTSAC	1 cut(s)	742
PflMI	CCANNNNNTGG	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	651
PkrI	GCNGC	7 cut(s)	156, 176, 179, 189, 400, 442, 571
PleI	GAGTC	2 cut(s)	106, 859
PpsI	GAGTC	2 cut(s)	106, 859
Psp6I	CCWGG	3 cut(s)	121, 214, 840
PspFI	CCCAGC	1 cut(s)	348
PspGI	CCWGG	3 cut(s)	121, 214, 840
PspN4I	GGNNCC	3 cut(s)	165, 166, 363
PspOMI	GGGCCC	1 cut(s)	164
PspPI	GGNCC	5 cut(s)	164, 165, 455, 671, 736
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	293
RseI	CAYNNNNRTG	2 cut(s)	197, 392
SatI	GCNGC	7 cut(s)	155, 175, 178, 188, 399, 441, 570
Sau3AI	GATC	5 cut(s)	293, 308, 325, 636, 723
Sau96I	GGNCC	5 cut(s)	164, 165, 455, 671, 736
SchI	GAGTC	2 cut(s)	107, 859
ScrFI	CCNGG	4 cut(s)	123, 216, 653, 842
SduI	GDGCHC	1 cut(s)	168
SinI	GGWCC	2 cut(s)	671, 736
SmiMI	CAYNNNNRTG	2 cut(s)	197, 392
Sse9I	AATT	1 cut(s)	596
SsiI	CCGC	9 cut(s)	26, 154, 177, 187, 239, 291, 398, 569, 788
SspMI	CTAG	6 cut(s)	134, 306, 504, 537, 713, 815
StyD4I	CCNGG	4 cut(s)	121, 214, 651, 840
StyI	CCWWGG	3 cut(s)	365, 687, 747
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	4 cut(s)	117, 319, 494, 800
TasI	AATT	1 cut(s)	596
TauI	GCSGC	5 cut(s)	157, 180, 190, 401, 572
TscAI	CASTG	2 cut(s)	134, 595
TseFI	GTSAC	1 cut(s)	742
TseI	GCWGC	2 cut(s)	174, 440
Tsp45I	GTSAC	1 cut(s)	742
TspDTI	ATGAA	3 cut(s)	209, 620, 863
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	2 cut(s)	134, 595
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	671, 736
XbaI	TCTAGA	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	6 cut(s)	134, 306, 504, 537, 713, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.