Rh5DG571000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0019488
Physical Location & Seq
Reverse (-)
87782490 .. 87782765
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG571000.1

Sequence Viewer

Length: 276 bp
ATGGCAAGGATGGAAGGTTGCTGTTTTGGGGGGTGCGTCGTCGTCATAGTGGTGCAGATCTGCTCTCTCCGGATCGTTCCGATCTGGGTTGGCTCTCTTCGGCCTGTTCTGGGACTAGTTTTGGTTGGCTGGACCGGTGTGGATTCGTGGGGAGGATGGGTGGTGGGCATGTTGTTGGCGGCGGTTAGTCTCCGGTGTCGTAGCAGTGCGGTGGCGCGTGTTTTGGCGCTGGTTTGTTGGGCTTGCGTGGATAGAGATGGAGGTGGTGGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.45

Weight (kDa)

8.61

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019488)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028192
rosa_multiflora Rmu_sc0007358.1_g000010
rosa_roxburghii Rroxscaffold_4G00309170
rosa_samantha Rh4DG242700 Rh5DG571000 Rh6CG326800 Rh7AG391800 Rh7CG410700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 217
AccIII TCCGGA 1 cut(s) 69
AciI CCGC 3 cut(s) 179, 182, 209
AclWI GGATC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 110
AgeI ACCGGT 1 cut(s) 134
AhlI ACTAGT 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 1 cut(s) 80
Aor13HI TCCGGA 1 cut(s) 69
AoxI GGCC 1 cut(s) 101
AsiGI ACCGGT 1 cut(s) 134
AspLEI GCGC 2 cut(s) 217, 229
AspS9I GGNCC 1 cut(s) 132
AvaII GGWCC 1 cut(s) 132
BccI CCATC 3 cut(s) 4, 150, 251
BcoDI GTCTC 1 cut(s) 194
BcuI ACTAGT 1 cut(s) 115
BfaI CTAG 1 cut(s) 116
BfoI RGCGCY 1 cut(s) 230
BglII AGATCT 1 cut(s) 57
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 132
BsaWI WCCGGW 3 cut(s) 69, 134, 192
BsaXI ACNNNNNCTCC 2 cut(s) 144, 174
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse118I RCCGGY 1 cut(s) 134
BseAI TCCGGA 1 cut(s) 69
BseGI GGATG 2 cut(s) 15, 161
BseLI CCNNNNNNNGG 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 103
BshTI ACCGGT 1 cut(s) 134
BsiSI CCGG 3 cut(s) 70, 135, 193
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 1 cut(s) 103
Bsp13I TCCGGA 1 cut(s) 69
Bsp143I GATC 3 cut(s) 57, 72, 81
BspACI CCGC 3 cut(s) 179, 182, 209
BspANI GGCC 1 cut(s) 103
BspEI TCCGGA 1 cut(s) 69
BspFNI CGCG 1 cut(s) 217
BspPI GGATC 1 cut(s) 80
BsrFI RCCGGY 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 134
BssMI GATC 3 cut(s) 57, 72, 81
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 244
BstF5I GGATG 2 cut(s) 15, 161
BstFNI CGCG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 2 cut(s) 217, 229
BstKTI GATC 3 cut(s) 60, 75, 84
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 57, 72, 81
BstNSI RCATGY 1 cut(s) 172
BstUI CGCG 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 1 cut(s) 103
BtsCI GGATG 2 cut(s) 15, 161
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 244
CfoI GCGC 2 cut(s) 217, 229
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 132
CseI GACGC 1 cut(s) 25
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 1 cut(s) 169
CviJI RGCY 4 cut(s) 93, 103, 129, 242
CviKI_1 RGCY 4 cut(s) 93, 103, 129, 242
DpnI GATC 3 cut(s) 59, 74, 83
DpnII GATC 3 cut(s) 57, 72, 81
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 132
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 47, 170
FaqI GGGAC 1 cut(s) 126
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 2 cut(s) 22, 168
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 116
GlaI GCGC 2 cut(s) 216, 228
GluI GCNGC 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 1 cut(s) 103
HapII CCGG 3 cut(s) 70, 135, 193
HgaI GACGC 1 cut(s) 25
HhaI GCGC 2 cut(s) 217, 229
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 2 cut(s) 215, 227
HinP1I GCGC 2 cut(s) 215, 227
HinfI GANTC 1 cut(s) 143
HpaII CCGG 3 cut(s) 70, 135, 193
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 70
Hpy99I CGWCG 2 cut(s) 41, 44
HpyAV CCTTC 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 55
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 2 cut(s) 215, 227
Kpn2I TCCGGA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 57, 72, 81
LpnPI CCDG 8 cut(s) 70, 83, 95, 115, 117, 148, 206, 215
MaeI CTAG 1 cut(s) 116
MalI GATC 3 cut(s) 59, 74, 83
MboI GATC 3 cut(s) 57, 72, 81
MboII GAAGA 1 cut(s) 89
MflI RGATCY 1 cut(s) 57
MnlI CCTC 2 cut(s) 146, 254
MroI TCCGGA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 50
MspI CCGG 3 cut(s) 70, 135, 193
MvnI CGCG 1 cut(s) 217
NdeII GATC 3 cut(s) 57, 72, 81
NlaIII CATG 1 cut(s) 172
NspI RCATGY 1 cut(s) 172
PfeI GAWTC 1 cut(s) 143
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 132
PsuI RGATCY 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 57, 72, 81
Sau96I GGNCC 1 cut(s) 132
SetI ASST 2 cut(s) 19, 265
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 115
SsiI CCGC 3 cut(s) 179, 182, 209
SspMI CTAG 1 cut(s) 116
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 1 cut(s) 211
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 132
XceI RCATGY 1 cut(s) 172
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.