Rh7AG391800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019488
Physical Location & Seq
Reverse (-)
51262685 .. 51270765
8081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG391800.1

Sequence Viewer

Length: 651 bp
ATGGCCCGAGATTTGATGAGGTCAAAATTAGGGGGCGATGCTTCACAGTTATACGGCGGTGGTAGAGCTGTATGTTTCGTTAGAATGGGAGGGTCCAGATTTGTGGATTGTGGTCGGAGCATGCTAGCTCGTGCTGTCTCTATGGTGGCGTGGCTCGATGGTGGTGCTTTTCCATGGCAAGGCAAGGATGGAAGGATAATAATGTTGGAAGACTTTGACCTATGCACATTGAAGAATCCCTACTCTCTCCCCATGGCCATGGAGAAGAAGATGTACGATTTGATGGAGCAGAAATTACCTAAATTGGGAGAGAAAATACCTGAATTAATGGACAAGATGCCTGAAATGATGGAGAATTTGCCTGAATTGATGGACAAGCTGCCTGAATTTATGAAGAAGATTGCGGAGAAGATGCCTGCATCCACGAAGAAGATGCCTGAATACATGGCTGAATCCATAGAGGATTTCCTTGGGACTGTAAATGCATTGGTGGATCATCTCCCTGAGATTCTCAGGCATCGACCTGAAGGGGTGCAGAGTCTCAGGGATATACCTGAAGAGGTGGAGAGTCAGATGCCTCCGGAAATGGTTGAGTTTGTTAGAATCTTTAGTAGTTGGTTTGAAGATGATGAGCAACAAGAATCGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.67

Weight (kDa)

4.82

Isoelectric Point (pI)

68.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019488)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028192
rosa_multiflora Rmu_sc0007358.1_g000010
rosa_roxburghii Rroxscaffold_4G00309170
rosa_samantha Rh4DG242700 Rh5DG571000 Rh6CG326800 Rh7AG391800 Rh7CG410700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 580
AciI CCGC 2 cut(s) 57, 404
AclWI GGATC 1 cut(s) 501
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 355, 386
AcuI CTGAAG 2 cut(s) 546, 576
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 179, 305
AgsI TTSAA 2 cut(s) 232, 623
AluBI AGCT 3 cut(s) 68, 128, 379
AluI AGCT 3 cut(s) 68, 128, 379
Alw26I GTCTC 2 cut(s) 142, 545
AlwI GGATC 1 cut(s) 501
Ama87I CYCGRG 1 cut(s) 6
Aor13HI TCCGGA 1 cut(s) 580
AoxI GGCC 2 cut(s) 3, 255
ApeKI GCWGC 1 cut(s) 379
ApoI RAATTY 2 cut(s) 355, 386
AseI ATTAAT 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 4, 93
AsuNHI GCTAGC 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 257
BarI GAAGNNNNNNTAC 4 cut(s) 224, 256, 257, 289
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 366
BccI CCATC 5 cut(s) 152, 182, 277, 343, 364
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 4 cut(s) 146, 180, 415, 449
BcoDI GTCTC 2 cut(s) 142, 545
BfaI CTAG 1 cut(s) 125
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme18I GGWCC 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 2 cut(s) 4, 93
BmiI GGNNCC 1 cut(s) 94
BmsI GCATC 7 cut(s) 28, 327, 402, 423, 428, 526, 564
BmtI GCTAGC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 216
BsaJI CCNNGG 4 cut(s) 173, 252, 258, 469
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 305
BseAI TCCGGA 1 cut(s) 580
BseDI CCNNGG 4 cut(s) 173, 252, 258, 469
BseGI GGATG 2 cut(s) 193, 419
BseLI CCNNNNNNNGG 2 cut(s) 179, 305
BseMII CTCAG 3 cut(s) 495, 526, 556
BseXI GCAGC 1 cut(s) 366
BsgI GTGCAG 1 cut(s) 554
BshFI GGCC 2 cut(s) 5, 257
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 581
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 2 cut(s) 179, 305
BsmAI GTCTC 2 cut(s) 142, 545
BsmFI GGGAC 1 cut(s) 487
BsnI GGCC 2 cut(s) 5, 257
BsoBI CYCGRG 1 cut(s) 6
Bsp13I TCCGGA 1 cut(s) 580
Bsp143I GATC 1 cut(s) 493
Bsp19I CCATGG 3 cut(s) 173, 252, 258
BspACI CCGC 2 cut(s) 57, 404
BspANI GGCC 2 cut(s) 5, 257
BspCNI CTCAG 3 cut(s) 496, 525, 555
BspEI TCCGGA 1 cut(s) 580
BspLI GGNNCC 1 cut(s) 94
BspOI GCTAGC 1 cut(s) 128
BspPI GGATC 1 cut(s) 501
BssECI CCNNGG 4 cut(s) 173, 252, 258, 469
BssMI GATC 1 cut(s) 493
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 4 cut(s) 173, 252, 258, 469
Bst2BI CACGAG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 48, 478
Bst6I CTCTTC 1 cut(s) 552
BstC8I GCNNGC 3 cut(s) 122, 126, 417
BstDEI CTNAG 3 cut(s) 504, 512, 542
BstDSI CCRYGG 3 cut(s) 173, 252, 258
BstF5I GGATG 2 cut(s) 193, 419
BstKTI GATC 1 cut(s) 496
BstMAI GTCTC 2 cut(s) 142, 545
BstMBI GATC 1 cut(s) 493
BstNSI RCATGY 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 366
BstV2I GAAGAC 1 cut(s) 216
BstXI CCANNNNNNTGG 2 cut(s) 103, 259
BsuRI GGCC 2 cut(s) 5, 257
BtgI CCRYGG 3 cut(s) 173, 252, 258
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 193, 419
Cac8I GCNNGC 3 cut(s) 122, 126, 417
Cfr13I GGNCC 2 cut(s) 4, 93
Csp6I GTAC 1 cut(s) 274
CviAII CATG 6 cut(s) 121, 174, 253, 259, 445, 648
CviJI RGCY 7 cut(s) 5, 68, 128, 154, 257, 379, 449
CviKI_1 RGCY 7 cut(s) 5, 68, 128, 154, 257, 379, 449
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 3 cut(s) 504, 512, 542
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco130I CCWWGG 4 cut(s) 173, 252, 258, 469
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 2 cut(s) 546, 576
Eco88I CYCGRG 1 cut(s) 6
EcoT14I CCWWGG 4 cut(s) 173, 252, 258, 469
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 4 cut(s) 173, 252, 258, 469
FaeI CATG 6 cut(s) 124, 177, 256, 262, 448, 651
FaqI GGGAC 1 cut(s) 487
FatI CATG 6 cut(s) 120, 173, 252, 258, 444, 647
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 2 cut(s) 200, 406
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 125
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 2 cut(s) 5, 257
HapII CCGG 1 cut(s) 581
Hin1II CATG 6 cut(s) 124, 177, 256, 262, 448, 651
HinfI GANTC 7 cut(s) 235, 452, 508, 538, 568, 603, 641
HpaII CCGG 1 cut(s) 581
Hpy188I TCNGA 2 cut(s) 117, 573
Hpy188III TCNNGA 2 cut(s) 96, 581
HpyAV CCTTC 2 cut(s) 186, 521
HpyCH4III ACNGT 2 cut(s) 48, 478
HpyCH4V TGCA 4 cut(s) 225, 419, 485, 535
HpyF3I CTNAG 3 cut(s) 504, 512, 542
Hsp92II CATG 6 cut(s) 124, 177, 256, 262, 448, 651
Kpn2I TCCGGA 1 cut(s) 580
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 117, 286
Lsp1109I GCAGC 1 cut(s) 366
LweI GCATC 7 cut(s) 28, 327, 402, 423, 428, 526, 564
MaeI CTAG 1 cut(s) 125
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 7 cut(s) 26, 293, 302, 323, 355, 365, 386
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 2 cut(s) 547, 577
MmeI TCCRAC 2 cut(s) 95, 186
MnlI CCTC 5 cut(s) 12, 83, 454, 553, 588
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 1 cut(s) 487
MroI TCCGGA 1 cut(s) 580
MscI TGGCCA 1 cut(s) 257
MseI TTAA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 1 cut(s) 581
NcoI CCATGG 3 cut(s) 173, 252, 258
NdeII GATC 1 cut(s) 493
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 6 cut(s) 124, 177, 256, 262, 448, 651
NlaIV GGNNCC 1 cut(s) 94
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PfeI GAWTC 5 cut(s) 235, 452, 508, 603, 641
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 2 cut(s) 546, 576
PpsI GAGTC 2 cut(s) 546, 576
PshBI ATTAAT 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 4, 93
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 257
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 1 cut(s) 493
Sau96I GGNCC 2 cut(s) 4, 93
SchI GAGTC 2 cut(s) 547, 577
SfaNI GCATC 7 cut(s) 28, 327, 402, 423, 428, 526, 564
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 257
SphI GCATGC 1 cut(s) 124
Sse9I AATT 7 cut(s) 26, 293, 302, 323, 355, 365, 386
SsiI CCGC 2 cut(s) 57, 404
SspMI CTAG 1 cut(s) 125
StyI CCWWGG 4 cut(s) 173, 252, 258, 469
TaaI ACNGT 2 cut(s) 48, 478
TaqI TCGA 2 cut(s) 156, 520
TasI AATT 7 cut(s) 26, 293, 302, 323, 355, 365, 386
TfiI GAWTC 5 cut(s) 235, 452, 508, 603, 641
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseI GCWGC 1 cut(s) 379
TspDTI ATGAA 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 93
VspI ATTAAT 1 cut(s) 326
XapI RAATTY 2 cut(s) 355, 386
XceI RCATGY 1 cut(s) 124
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.