Rh6CG326800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019488
Physical Location & Seq
Reverse (-)
51351061 .. 51352466
1406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG326800.1

Sequence Viewer

Length: 495 bp
ATGCTGGCTTGTGCTGTGTCTGTGGTGGCGAGGCTTGGTGGTCGTGCAGTTCCATGGCAAGGGGCGCGTCGTGGTCATAGGGGTGCAGATCTGTTCTGTCCAGGATTGGGTCTCTTCAACCTGACCTGGGAATGGATTTTGGTTGGCTGGGCTGGTGTGGATCTGCGGTGCGGAAGGGAGGATGGCATGATGTTGGCGGTGGTCAGTCTCCGGTGGCGAGTGTCTAAGATTGCGCAACAGAGGTGGCGGCGAGTGCTTCGGCACTGGTTTGTTGGGCTTGCGAGGATAGAGGTGGAGGTGGTGGGCTGGGGGATGTGTTCTGTCGGGGCTTGGCTGATTATGCTTGGCCGGCGATGCTTGGTTGACGGTAGTCGGGGTCTGAAGGTGGTGGCGGTCTGGGCCTTAAGCGAGTGTGGGCCAGGCCTGGGCCTGGTGGTATTTGGGACTCGGGAGAACAATTTTCACACTGACGATATTTTCTTGAGAGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.33

Weight (kDa)

9.78

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019488)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028192
rosa_multiflora Rmu_sc0007358.1_g000010
rosa_roxburghii Rroxscaffold_4G00309170
rosa_samantha Rh4DG242700 Rh5DG571000 Rh6CG326800 Rh7AG391800 Rh7CG410700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 234
AccII CGCG 1 cut(s) 67
AciI CCGC 5 cut(s) 166, 171, 197, 247, 392
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 1 cut(s) 346
AcuI CTGAAG 1 cut(s) 401
AfiI CCNNNNNNNGG 6 cut(s) 59, 107, 127, 132, 425, 430
AflII CTTAAG 1 cut(s) 403
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 5 cut(s) 100, 125, 418, 423, 429
Alw26I GTCTC 2 cut(s) 116, 212
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 5 cut(s) 346, 399, 416, 421, 427
AspLEI GCGC 2 cut(s) 67, 235
AspS9I GGNCC 3 cut(s) 399, 416, 427
AvaI CYCGRG 1 cut(s) 447
BccI CCATC 1 cut(s) 176
BciT130I CCWGG 5 cut(s) 102, 127, 420, 425, 431
BcoDI GTCTC 2 cut(s) 116, 212
BfrI CTTAAG 1 cut(s) 403
BglII AGATCT 1 cut(s) 88
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
Bme1390I CCNGG 5 cut(s) 102, 127, 420, 425, 431
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 3 cut(s) 399, 416, 427
BmrFI CCNGG 5 cut(s) 102, 127, 420, 425, 431
BmsI GCATC 1 cut(s) 344
BoxI GACNNNNGTC 1 cut(s) 369
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 3 cut(s) 53, 126, 424
BsaWI WCCGGW 1 cut(s) 210
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 107, 127, 132, 425, 430
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 5 cut(s) 102, 127, 420, 425, 431
BseDI CCNNGG 3 cut(s) 53, 126, 424
BseGI GGATG 2 cut(s) 187, 318
BseLI CCNNNNNNNGG 6 cut(s) 59, 107, 127, 132, 425, 430
BseNI ACTGG 1 cut(s) 269
BseYI CCCAGC 2 cut(s) 147, 306
BsgI GTGCAG 2 cut(s) 66, 105
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 5 cut(s) 348, 401, 418, 423, 429
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 2 cut(s) 211, 349
BslFI GGGAC 1 cut(s) 457
BslI CCNNNNNNNGG 6 cut(s) 59, 107, 127, 132, 425, 430
BsmAI GTCTC 2 cut(s) 116, 212
BsmFI GGGAC 1 cut(s) 457
BsnI GGCC 5 cut(s) 348, 401, 418, 423, 429
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 447
Bsp143I GATC 2 cut(s) 88, 160
Bsp19I CCATGG 1 cut(s) 53
BspACI CCGC 5 cut(s) 166, 171, 197, 247, 392
BspANI GGCC 5 cut(s) 348, 401, 418, 423, 429
BspFNI CGCG 1 cut(s) 67
BspPI GGATC 1 cut(s) 168
BspTI CTTAAG 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 53, 126, 424
BssMI GATC 2 cut(s) 88, 160
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 5 cut(s) 102, 127, 420, 425, 431
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 119
BstAFI CTTAAG 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 6, 279, 350
BstDEI CTNAG 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 187, 318
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 2 cut(s) 67, 235
BstKTI GATC 2 cut(s) 91, 163
BstMAI GTCTC 2 cut(s) 116, 212
BstMBI GATC 2 cut(s) 88, 160
BstMWI GCNNNNNNNGC 6 cut(s) 64, 253, 340, 349, 354, 398
BstNI CCWGG 5 cut(s) 102, 127, 420, 425, 431
BstPAI GACNNNNGTC 1 cut(s) 369
BstSCI CCNGG 5 cut(s) 100, 125, 418, 423, 429
BstUI CGCG 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 88, 160
BstYI RGATCY 2 cut(s) 88, 160
BsuRI GGCC 5 cut(s) 348, 401, 418, 423, 429
BtgI CCRYGG 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 367
BtsCI GGATG 2 cut(s) 187, 318
BtsIMutI CAGTG 2 cut(s) 262, 465
Cac8I GCNNGC 3 cut(s) 6, 279, 350
CfoI GCGC 2 cut(s) 67, 235
Cfr10I RCCGGY 1 cut(s) 348
Cfr13I GGNCC 3 cut(s) 399, 416, 427
CseI GACGC 1 cut(s) 56
CspCI CAANNNNNGTGG 2 cut(s) 224, 259
CviAII CATG 2 cut(s) 54, 187
DdeI CTNAG 1 cut(s) 225
DpnI GATC 2 cut(s) 90, 162
DpnII GATC 2 cut(s) 88, 160
EaeI YGGCCR 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 53
Eco147I AGGCCT 1 cut(s) 423
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 447
EcoRII CCWGG 5 cut(s) 100, 125, 418, 423, 429
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 2 cut(s) 57, 190
FaiI YATR 4 cut(s) 55, 78, 188, 341
FaqI GGGAC 1 cut(s) 457
FatI CATG 2 cut(s) 53, 186
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 2 cut(s) 194, 325
Fsp4HI GCNGC 1 cut(s) 248
FspI TGCGCA 1 cut(s) 234
GlaI GCGC 2 cut(s) 66, 234
GluI GCNGC 1 cut(s) 248
GsaI CCCAGC 2 cut(s) 151, 310
HaeIII GGCC 5 cut(s) 348, 401, 418, 423, 429
HapII CCGG 2 cut(s) 211, 349
HgaI GACGC 1 cut(s) 56
HhaI GCGC 2 cut(s) 67, 235
Hin1II CATG 2 cut(s) 57, 190
Hin6I GCGC 2 cut(s) 65, 233
HinP1I GCGC 2 cut(s) 65, 233
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 1 cut(s) 445
HpaII CCGG 2 cut(s) 211, 349
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 381
Hpy188III TCNNGA 2 cut(s) 449, 481
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 168, 376
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 2 cut(s) 47, 86
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 253, 340, 349, 354, 398
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 2 cut(s) 57, 190
HspAI GCGC 2 cut(s) 65, 233
KroI GCCGGC 1 cut(s) 348
KroNI GCCGGC 1 cut(s) 350
Kzo9I GATC 2 cut(s) 88, 160
LweI GCATC 1 cut(s) 344
MalI GATC 2 cut(s) 90, 162
MboI GATC 2 cut(s) 88, 160
MboII GAAGA 1 cut(s) 106
MflI RGATCY 2 cut(s) 88, 160
MluCI AATT 1 cut(s) 457
MlyI GAGTC 1 cut(s) 439
MnlI CCTC 7 cut(s) 24, 172, 234, 276, 283, 289, 481
MroNI GCCGGC 1 cut(s) 348
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 403
MspI CCGG 2 cut(s) 211, 349
MspR9I CCNGG 5 cut(s) 102, 127, 420, 425, 431
MvaI CCWGG 5 cut(s) 102, 127, 420, 425, 431
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 6 cut(s) 64, 253, 340, 349, 354, 398
NaeI GCCGGC 1 cut(s) 350
NcoI CCATGG 1 cut(s) 53
NdeII GATC 2 cut(s) 88, 160
NgoMIV GCCGGC 1 cut(s) 348
NlaIII CATG 2 cut(s) 57, 190
NsbI TGCGCA 1 cut(s) 234
PceI AGGCCT 1 cut(s) 423
PdiI GCCGGC 1 cut(s) 350
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PshAI GACNNNNGTC 1 cut(s) 369
Psp6I CCWGG 5 cut(s) 100, 125, 418, 423, 429
PspFI CCCAGC 2 cut(s) 147, 306
PspGI CCWGG 5 cut(s) 100, 125, 418, 423, 429
PspPI GGNCC 3 cut(s) 399, 416, 427
PsuI RGATCY 2 cut(s) 88, 160
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 2 cut(s) 88, 160
Sau96I GGNCC 3 cut(s) 399, 416, 427
SchI GAGTC 1 cut(s) 439
ScrFI CCNGG 5 cut(s) 102, 127, 420, 425, 431
SetI ASST 6 cut(s) 123, 128, 245, 294, 300, 387
SfaNI GCATC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 403, 481
SmoI CTYRAG 2 cut(s) 403, 481
Sse9I AATT 1 cut(s) 457
SseBI AGGCCT 1 cut(s) 423
SsiI CCGC 5 cut(s) 166, 171, 197, 247, 392
StuI AGGCCT 1 cut(s) 423
StyD4I CCNGG 5 cut(s) 100, 125, 418, 423, 429
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 368
TasI AATT 1 cut(s) 457
TauI GCSGC 1 cut(s) 250
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 2 cut(s) 269, 472
TspRI CASTG 2 cut(s) 269, 472
Vha464I CTTAAG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.