Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0019488

Physical Location & Seq

Genomic Coordinates Reverse (-)

52684052 .. 52694374

Gene Structure 10323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG410700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATGATGAATGGAGTTAGTCAAGCCACTCAAAGTTGGGCGACCCAACTAGCTTCTGTATCCAAAACGACTTTACTGGTTATGAGGGTTGATGATAGTGGATTGGCCGAGTATGGCTCTTTGTCTAGAATGTTGGAAGACTTTGACCTATGCACATTGAAGAATCCCTACTCTCTCCCCATGGCCATGGAGAAGAAGATGTACGATTTGATGGAGCAGAAATTACCTAAATTGGGAGAGAAAATACCTGAATTAATGGACAAGATGCCTGAAATGATGGAGAATTTGCCTGAATTGATGGACAAGCTGCCTGAATTTATGAAGAAGATTGCGGAGAAGATGCCTGCATCCACGAAGAAGATGCCTGAATACATGGCTGAATCCATAGAGGATTTCCTTGGGACTGTAAATGCATTGGTGGATCATCTCCCTGAGATTCTCAGGCATCGACCTGAAGGGGTGCAGAGTCTCAGGGATATACCTGAAGAGGTGGAGAGTCAGATGCCTCCGGAAATGGTTGAGTTTGTTAGAATCTTTAGTAGTTGGTTTGAAGATGATGAGCAACAAGAATCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

22.09

Weight (kDa)

4.53

Isoelectric Point (pI)

67.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019488)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000028192
rosa_multiflora	Rmu_sc0007358.1_g000010
rosa_roxburghii	Rroxscaffold_4G00309170
rosa_samantha	Rh4DG242700 Rh5DG571000 Rh6CG326800 Rh7AG391800 Rh7CG410700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	508
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	429
AcoI	YGGCCR	2 cut(s)	105, 183
AcsI	RAATTY	2 cut(s)	283, 314
AcuI	CTGAAG	2 cut(s)	474, 504
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	160, 551
AluBI	AGCT	2 cut(s)	53, 307
AluI	AGCT	2 cut(s)	53, 307
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	429
Aor13HI	TCCGGA	1 cut(s)	508
AoxI	GGCC	2 cut(s)	105, 183
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	2 cut(s)	283, 314
AseI	ATTAAT	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	185
BarI	GAAGNNNNNNTAC	4 cut(s)	152, 184, 185, 217
BbsI	GAAGAC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	3 cut(s)	205, 271, 292
BcgI	CGANNNNNNTGC	2 cut(s)	343, 377
BciVI	GTATCC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	2 cut(s)	50, 126
BfuI	GTATCC	1 cut(s)	70
BisI	GCNGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	309
BmsI	GCATC	6 cut(s)	255, 330, 351, 356, 454, 492
BpiI	GAAGAC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BsaJI	CCNNGG	3 cut(s)	180, 186, 397
BsaWI	WCCGGW	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	508
BseDI	CCNNGG	3 cut(s)	180, 186, 397
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	3 cut(s)	423, 454, 484
BseNI	ACTGG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	2 cut(s)	107, 185
BsiSI	CCGG	1 cut(s)	509
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	107, 185
Bsp13I	TCCGGA	1 cut(s)	508
Bsp143I	GATC	1 cut(s)	421
Bsp19I	CCATGG	2 cut(s)	180, 186
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	107, 185
BspCNI	CTCAG	3 cut(s)	424, 453, 483
BspEI	TCCGGA	1 cut(s)	508
BspPI	GGATC	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	3 cut(s)	180, 186, 397
BssMI	GATC	1 cut(s)	421
BssT1I	CCWWGG	3 cut(s)	180, 186, 397
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	480
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	432, 440, 470
BstDSI	CCRYGG	2 cut(s)	180, 186
BstF5I	GGATG	1 cut(s)	347
BstKTI	GATC	1 cut(s)	424
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	294
BstV2I	GAAGAC	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	187
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	107, 185
BtgI	CCRYGG	2 cut(s)	180, 186
BtsCI	GGATG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	181, 187, 373, 576
CviJI	RGCY	7 cut(s)	26, 53, 107, 117, 185, 307, 377
CviKI_1	RGCY	7 cut(s)	26, 53, 107, 117, 185, 307, 377
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	432, 440, 470
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
EaeI	YGGCCR	2 cut(s)	105, 183
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	3 cut(s)	180, 186, 397
Eco57I	CTGAAG	2 cut(s)	474, 504
EcoT14I	CCWWGG	3 cut(s)	180, 186, 397
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	3 cut(s)	180, 186, 397
FaeI	CATG	4 cut(s)	184, 190, 376, 579
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	4 cut(s)	180, 186, 372, 575
Fnu4HI	GCNGC	1 cut(s)	308
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	308
FspBI	CTAG	2 cut(s)	50, 126
GluI	GCNGC	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	107, 185
HapII	CCGG	1 cut(s)	509
Hin1II	CATG	4 cut(s)	184, 190, 376, 579
HinfI	GANTC	7 cut(s)	163, 380, 436, 466, 496, 531, 569
HpaII	CCGG	1 cut(s)	509
Hpy188I	TCNGA	1 cut(s)	501
Hpy188III	TCNNGA	2 cut(s)	126, 509
HpyAV	CCTTC	1 cut(s)	449
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4V	TGCA	4 cut(s)	153, 347, 413, 463
HpyF3I	CTNAG	3 cut(s)	432, 440, 470
Hsp92II	CATG	4 cut(s)	184, 190, 376, 579
Kpn2I	TCCGGA	1 cut(s)	508
Kzo9I	GATC	1 cut(s)	421
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	6 cut(s)	255, 330, 351, 356, 454, 492
MaeI	CTAG	2 cut(s)	50, 126
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	6 cut(s)	221, 230, 251, 283, 293, 314
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	475, 505
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	78, 382, 481, 516
Mox20I	TGGCCA	1 cut(s)	185
Mph1103I	ATGCAT	1 cut(s)	415
MroI	TCCGGA	1 cut(s)	508
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	254
MslI	CAYNNNNRTG	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	509
NcoI	CCATGG	2 cut(s)	180, 186
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	4 cut(s)	184, 190, 376, 579
NmeAIII	GCCGAG	1 cut(s)	133
NsiI	ATGCAT	1 cut(s)	415
PfeI	GAWTC	5 cut(s)	163, 380, 436, 531, 569
PkrI	GCNGC	1 cut(s)	309
PleI	GAGTC	2 cut(s)	474, 504
PpsI	GAGTC	2 cut(s)	474, 504
PshBI	ATTAAT	1 cut(s)	254
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	308
Sau3AI	GATC	1 cut(s)	421
SchI	GAGTC	2 cut(s)	475, 505
SetI	ASST	8 cut(s)	55, 150, 229, 250, 309, 454, 484, 492
SfaNI	GCATC	6 cut(s)	255, 330, 351, 356, 454, 492
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	6 cut(s)	221, 230, 251, 283, 293, 314
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	2 cut(s)	50, 126
StyI	CCWWGG	3 cut(s)	180, 186, 397
TaaI	ACNGT	1 cut(s)	406
TaqI	TCGA	1 cut(s)	448
TasI	AATT	6 cut(s)	221, 230, 251, 283, 293, 314
TfiI	GAWTC	5 cut(s)	163, 380, 436, 531, 569
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	23, 335
VspI	ATTAAT	1 cut(s)	254
XapI	RAATTY	2 cut(s)	283, 314
XbaI	TCTAGA	1 cut(s)	125
XspI	CTAG	2 cut(s)	50, 126
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.