Rh4DG242700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0019488
Physical Location & Seq
Forward (+)
45292348 .. 45294382
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG242700.1

Sequence Viewer

Length: 366 bp
ATGGGAGGGTCCAGATCGGAGGAGTGTGGTCGGAGCATGCTGGCTTGTGCTATGTCTGTGGTGGCGTGGCTCGGTGGTGGTGCTTTTCCATGGCAAGGCAAGGATGGAAGGATGATGTTTTGGATGGGGGGTATCGTGGTCTCTGCAGTGCGGATATGTTCTGTCCAGACCGATCCGATCTGGGTTAGGTCTCTTCGACCTGACCTGGGAATGGTTTTGGTTGGCTGGCCGGGCTTGTGTGGATCCGTGGTGCGGAAGCGAGGATGGCATGATGATGGCGGCGGTCAGTCTCAGATTGCGAAGCAGAGGGCGGAGGCGAGTGTTTTGGCGCTGGGTTTGTTCTCCAGTTTGGGCTCTCGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.83

Weight (kDa)

9.57

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019488)

Species Orthologous Gene IDs
rosa_laevigata RLG00000028192
rosa_multiflora Rmu_sc0007358.1_g000010
rosa_roxburghii Rroxscaffold_4G00309170
rosa_samantha Rh4DG242700 Rh5DG571000 Rh6CG326800 Rh7AG391800 Rh7CG410700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 151, 253, 279, 282, 311
AclWI GGATC 3 cut(s) 167, 237, 250
AcoI YGGCCR 1 cut(s) 227
AfiI CCNNNNNNNGG 4 cut(s) 95, 206, 211, 252
AjnI CCWGG 1 cut(s) 204
Alw26I GTCTC 3 cut(s) 145, 195, 294
AlwI GGATC 3 cut(s) 167, 237, 250
Ama87I CYCGRG 1 cut(s) 357
AoxI GGCC 1 cut(s) 227
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 231
AvaI CYCGRG 1 cut(s) 357
AvaII GGWCC 1 cut(s) 9
BamHI GGATCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 356
BccI CCATC 4 cut(s) 98, 118, 258, 269
BciT130I CCWGG 1 cut(s) 206
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 145, 195, 294
BfmI CTRYAG 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
Bme1390I CCNGG 2 cut(s) 206, 231
Bme18I GGWCC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 10, 244
BmrFI CCNGG 2 cut(s) 206, 231
BpmI CTGGAG 1 cut(s) 328
BpuMI CCSGG 1 cut(s) 231
BsaI GGTCTC 2 cut(s) 145, 195
BsaJI CCNNGG 3 cut(s) 89, 205, 246
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 206, 211, 252
Bse1I ACTGG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 3 cut(s) 89, 205, 246
BseGI GGATG 4 cut(s) 109, 117, 129, 269
BseLI CCNNNNNNNGG 4 cut(s) 95, 206, 211, 252
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 331
BshFI GGCC 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 1 cut(s) 230
BslI CCNNNNNNNGG 4 cut(s) 95, 206, 211, 252
BsmAI GTCTC 3 cut(s) 145, 195, 294
BsnI GGCC 1 cut(s) 229
Bso31I GGTCTC 2 cut(s) 145, 195
BsoBI CYCGRG 1 cut(s) 357
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 4 cut(s) 14, 172, 177, 242
Bsp19I CCATGG 1 cut(s) 89
BspACI CCGC 5 cut(s) 151, 253, 279, 282, 311
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 10, 244
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 3 cut(s) 167, 237, 250
BspTNI GGTCTC 2 cut(s) 145, 195
BsrI ACTGG 1 cut(s) 345
BssECI CCNNGG 3 cut(s) 89, 205, 246
BssMI GATC 4 cut(s) 14, 172, 177, 242
BssT1I CCWWGG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 38, 42, 227
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 2 cut(s) 89, 246
BstF5I GGATG 4 cut(s) 109, 117, 129, 269
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 4 cut(s) 17, 175, 180, 245
BstMAI GTCTC 3 cut(s) 145, 195, 294
BstMBI GATC 4 cut(s) 14, 172, 177, 242
BstMWI GCNNNNNNNGC 2 cut(s) 231, 265
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 204, 229
BstSFI CTRYAG 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BsuRI GGCC 1 cut(s) 229
BtgI CCRYGG 2 cut(s) 89, 246
BtsCI GGATG 4 cut(s) 109, 117, 129, 269
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 3 cut(s) 38, 42, 227
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 9
CviAII CATG 3 cut(s) 37, 90, 269
CviJI RGCY 6 cut(s) 44, 70, 225, 229, 234, 354
CviKI_1 RGCY 6 cut(s) 44, 70, 225, 229, 234, 354
DdeI CTNAG 1 cut(s) 291
DpnI GATC 4 cut(s) 16, 174, 179, 244
DpnII GATC 4 cut(s) 14, 172, 177, 242
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 2 cut(s) 145, 195
Eco47I GGWCC 1 cut(s) 9
Eco88I CYCGRG 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 89
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 89
FaeI CATG 3 cut(s) 40, 93, 272
FaiI YATR 5 cut(s) 38, 53, 91, 157, 270
FatI CATG 3 cut(s) 36, 89, 268
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 4 cut(s) 116, 124, 136, 276
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 280
GlaI GCGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 280
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 328
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 1 cut(s) 229
HapII CCGG 1 cut(s) 230
HhaI GCGC 1 cut(s) 331
Hin1II CATG 3 cut(s) 40, 93, 272
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HpaII CCGG 1 cut(s) 230
Hpy188I TCNGA 4 cut(s) 19, 33, 177, 294
Hpy188III TCNNGA 3 cut(s) 12, 166, 357
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 265
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 3 cut(s) 40, 93, 272
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 4 cut(s) 14, 172, 177, 242
LmnI GCTCC 1 cut(s) 33
MalI GATC 4 cut(s) 16, 174, 179, 244
MboI GATC 4 cut(s) 14, 172, 177, 242
MboII GAAGA 1 cut(s) 185
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 356
MmeI TCCRAC 1 cut(s) 11
MnlI CCTC 5 cut(s) 13, 254, 300, 307, 353
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 2 cut(s) 206, 231
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 231, 265
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 89
NdeII GATC 4 cut(s) 14, 172, 177, 242
NlaIII CATG 3 cut(s) 40, 93, 272
NlaIV GGNNCC 2 cut(s) 10, 244
NspI RCATGY 1 cut(s) 40
PaeI GCATGC 1 cut(s) 40
PaeR7I CTCGAG 1 cut(s) 357
PkrI GCNGC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 2 cut(s) 10, 244
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 273
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 4 cut(s) 14, 172, 177, 242
Sau96I GGNCC 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 206, 231
SduI GDGCHC 1 cut(s) 356
SetI ASST 3 cut(s) 191, 202, 207
SfcI CTRYAG 1 cut(s) 144
Sfr274I CTCGAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 9
SlaI CTCGAG 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
SphI GCATGC 1 cut(s) 40
SsiI CCGC 5 cut(s) 151, 253, 279, 282, 311
StyD4I CCNGG 2 cut(s) 204, 229
StyI CCWWGG 1 cut(s) 89
TaqI TCGA 2 cut(s) 196, 358
TaqII GACCGA 1 cut(s) 185
TauI GCSGC 1 cut(s) 282
TscAI CASTG 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 9
XceI RCATGY 1 cut(s) 40
XhoI CTCGAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.