Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007424.1

Orthogroup ID

OG0018078

Physical Location & Seq

Genomic Coordinates Reverse (-)

14815 .. 15602

Gene Structure 788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgaatgcgtactacaacctttaccactcactaggtggcacctgcgatttctctggttccggacaagtcacaaactttgacccaagcaaaggctcgtgccagtttagtagtggaagtaaagctgtaccacttaatacgccgggtagttctgccacacctatacccaaaacaccgaaaccttcaccaggaggagacaatggtccaggcctcaagtggtgcatagcaaaaccccatgctgatattcaagctttgcagaaaaacttagactggttgtgcggcatgatagaatgccaagccatacaaccaggtggtgcttgctatgacgaatctgtcaggtcccgagcatcctttgctatgaattcttactatcagacaaagggtcgtaacgactacaactgtgatttctctggaactggactcatcaccactgtcgacccaagtacgctaaaatgcccactctctttcttaatttcctttttctctctggttgctaaaatggccgggtttaatgtgatacgtaccttgattactacatcattcgttaatgtctgcgctagagagatcaagaacaattatggcagagtcccatataccactgaggaggagaaagaaaatagaagtttcgatttactaaattcaagtttctttcttttttttggttttgtttttcaggtcacgttcagtgtcgctatcttcgataagagtggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016043 GO:0016787 GO:0016798 GO:0022414 GO:0022607 GO:0030198 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0043062 GO:0044085 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0048229 GO:0048316 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

236

Amino Acids

25.73

Weight (kDa)

8.03

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
X8	PF07983	71 - 139	6e-21	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018078)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g22491
rosa_chinensis	RchiOBHm_Chr1g0367101
rosa_laevigata	RLG00000027298
rosa_multiflora	Rmu_sc0007424.1_g000005
rosa_roxburghii	Rroxscaffold_4G00289620
rosa_rugosa	Rorug01G0334400 Rorug01G0334500
rosa_samantha	Rh1BG301800 Rh1CG318100 Rh1DG334300
rosa_wichuraiana	Rw1G030340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	50
AasI	GACNNNNNNGTC	1 cut(s)	329
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	432
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	1 cut(s)	276
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	2 cut(s)	358, 634
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	4 cut(s)	11, 126, 442, 520
AfiI	CCNNNNNNNGG	2 cut(s)	89, 185
AgsI	TTSAA	2 cut(s)	245, 639
AhdI	GACNNNNNGTC	1 cut(s)	378
AjnI	CCWGG	3 cut(s)	184, 202, 304
AluBI	AGCT	2 cut(s)	122, 248
AluI	AGCT	2 cut(s)	122, 248
Alw26I	GTCTC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	339
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	2 cut(s)	205, 498
ApoI	RAATTY	2 cut(s)	358, 634
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	2 cut(s)	200, 336
AsuC2I	CCSGG	2 cut(s)	141, 502
AsuHPI	GGTGA	2 cut(s)	174, 415
AvaI	CYCGRG	1 cut(s)	339
AvaII	GGWCC	2 cut(s)	200, 336
BanI	GGYRCC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	94
BciT130I	CCWGG	3 cut(s)	186, 204, 306
BcnI	CCSGG	2 cut(s)	141, 502
BcoDI	GTCTC	1 cut(s)	186
BfaI	CTAG	2 cut(s)	32, 555
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	5 cut(s)	141, 186, 204, 306, 502
Bme18I	GGWCC	2 cut(s)	200, 336
BmeRI	GACNNNNNGTC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	200, 336
BmiI	GGNNCC	3 cut(s)	40, 58, 338
BmrFI	CCNGG	5 cut(s)	141, 186, 204, 306, 502
BmsI	GCATC	1 cut(s)	353
BoxI	GACNNNNGTC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	2 cut(s)	141, 502
BsaAI	YACGTR	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 185
Bse1I	ACTGG	3 cut(s)	100, 272, 418
BseAI	TCCGGA	1 cut(s)	59
BseBI	CCWGG	3 cut(s)	186, 204, 306
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	89, 185
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	3 cut(s)	100, 272, 418
BseRI	GAGGAG	3 cut(s)	204, 614, 617
BshFI	GGCC	2 cut(s)	207, 500
BshNI	GGYRCC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	60, 140, 501
BslFI	GGGAC	2 cut(s)	322, 569
BslI	CCNNNNNNNGG	2 cut(s)	89, 185
BsmAI	GTCTC	1 cut(s)	186
BsmFI	GGGAC	2 cut(s)	322, 569
BsmI	GAATGC	2 cut(s)	10, 293
BsnI	GGCC	2 cut(s)	207, 500
BsoBI	CYCGRG	1 cut(s)	339
Bsp13I	TCCGGA	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	561
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	2 cut(s)	207, 500
BspCNI	CTCAG	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	40, 58, 338
BspMI	ACCTGC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	38
BsrI	ACTGG	3 cut(s)	100, 272, 418
BssMI	GATC	1 cut(s)	561
BssSI	CACGAG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	94
Bst2UI	CCWGG	3 cut(s)	186, 204, 306
Bst4CI	ACNGT	2 cut(s)	398, 430
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	2 cut(s)	262, 597
BstENI	CCTNNNNNAGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	1 cut(s)	564
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	561
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 497
BstNI	CCWGG	3 cut(s)	186, 204, 306
BstPAI	GACNNNNGTC	1 cut(s)	198
BstSCI	CCNGG	5 cut(s)	139, 184, 202, 304, 500
BstSNI	TACGTA	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	207, 500
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	3 cut(s)	426, 594, 688
BveI	ACCTGC	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	2 cut(s)	200, 336
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	10, 125, 441, 519
CviAII	CATG	2 cut(s)	233, 280
CviJI	RGCY	6 cut(s)	93, 122, 207, 248, 296, 500
CviKI_1	RGCY	6 cut(s)	93, 122, 207, 248, 296, 500
CviQI	GTAC	4 cut(s)	10, 125, 441, 519
DdeI	CTNAG	2 cut(s)	262, 597
DpnI	GATC	1 cut(s)	563
DpnII	GATC	1 cut(s)	561
DraIII	CACNNNGTG	1 cut(s)	35
DrdI	GACNNNNNNGTC	1 cut(s)	329
DriI	GACNNNNNGTC	1 cut(s)	378
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	498
Eam1105I	GACNNNNNGTC	1 cut(s)	378
Eco105I	TACGTA	1 cut(s)	518
Eco147I	AGGCCT	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	200, 336
Eco88I	CYCGRG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	3 cut(s)	184, 202, 304
FaeI	CATG	2 cut(s)	236, 283
FaqI	GGGAC	2 cut(s)	322, 569
FatI	CATG	2 cut(s)	232, 279
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	2 cut(s)	32, 555
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	207, 500
HapII	CCGG	3 cut(s)	60, 140, 501
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	2 cut(s)	236, 283
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	3 cut(s)	326, 417, 582
HpaII	CCGG	3 cut(s)	60, 140, 501
HphI	GGTGA	2 cut(s)	174, 415
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	4 cut(s)	60, 339, 408, 565
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	2 cut(s)	398, 430
HpyCH4IV	ACGT	2 cut(s)	517, 677
HpyCH4V	TGCA	2 cut(s)	219, 253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 497
HpyF3I	CTNAG	2 cut(s)	262, 597
HpySE526I	ACGT	2 cut(s)	517, 677
Hsp92II	CATG	2 cut(s)	236, 283
HspAI	GCGC	1 cut(s)	552
Kpn2I	TCCGGA	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	561
LweI	GCATC	1 cut(s)	353
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	2 cut(s)	32, 555
MaeII	ACGT	2 cut(s)	517, 677
MaeIII	GTNAC	3 cut(s)	67, 383, 673
MalI	GATC	1 cut(s)	563
MboI	GATC	1 cut(s)	561
MboII	GAAGA	1 cut(s)	685
MluCI	AATT	4 cut(s)	358, 468, 571, 634
MlyI	GAGTC	2 cut(s)	411, 591
MnlI	CCTC	4 cut(s)	182, 218, 592, 595
MroI	TCCGGA	1 cut(s)	59
MseI	TTAA	4 cut(s)	132, 467, 507, 543
MspI	CCGG	3 cut(s)	60, 140, 501
MspR9I	CCNGG	5 cut(s)	141, 186, 204, 306, 502
Mva1269I	GAATGC	2 cut(s)	10, 293
MvaI	CCWGG	3 cut(s)	186, 204, 306
MwoI	GCNNNNNNNGC	2 cut(s)	350, 497
NciI	CCSGG	2 cut(s)	141, 502
NdeII	GATC	1 cut(s)	561
NlaIII	CATG	2 cut(s)	236, 283
NlaIV	GGNNCC	3 cut(s)	40, 58, 338
NmuCI	GTSAC	2 cut(s)	67, 673
PaqCI	CACCTGC	1 cut(s)	50
PceI	AGGCCT	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
PctI	GAATGC	2 cut(s)	10, 293
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	2 cut(s)	411, 590
PpsI	GAGTC	2 cut(s)	411, 590
Ppu21I	YACGTR	1 cut(s)	518
PpuMI	RGGWCCY	1 cut(s)	336
PshAI	GACNNNNGTC	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	336
Psp6I	CCWGG	3 cut(s)	184, 202, 304
PspGI	CCWGG	3 cut(s)	184, 202, 304
PspN4I	GGNNCC	3 cut(s)	40, 58, 338
PspPI	GGNCC	2 cut(s)	200, 336
PspPPI	RGGWCCY	1 cut(s)	336
RsaI	GTAC	4 cut(s)	11, 126, 442, 520
RsaNI	GTAC	4 cut(s)	10, 125, 441, 519
SalI	GTCGAC	1 cut(s)	431
SaqAI	TTAA	4 cut(s)	132, 467, 507, 543
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	1 cut(s)	561
Sau96I	GGNCC	2 cut(s)	200, 336
SchI	GAGTC	2 cut(s)	411, 591
ScrFI	CCNGG	5 cut(s)	141, 186, 204, 306, 502
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	1 cut(s)	353
SinI	GGWCC	2 cut(s)	200, 336
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SnaBI	TACGTA	1 cut(s)	518
Sse9I	AATT	4 cut(s)	358, 468, 571, 634
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	2 cut(s)	32, 555
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	5 cut(s)	139, 184, 202, 304, 500
TaaI	ACNGT	2 cut(s)	398, 430
TaiI	ACGT	2 cut(s)	520, 680
TaqI	TCGA	3 cut(s)	432, 624, 696
TasI	AATT	4 cut(s)	358, 468, 571, 634
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	4 cut(s)	132, 467, 507, 543
Tru9I	TTAA	4 cut(s)	132, 467, 507, 543
TscAI	CASTG	3 cut(s)	433, 601, 688
TseFI	GTSAC	2 cut(s)	67, 673
Tsp45I	GTSAC	2 cut(s)	67, 673
TspDTI	ATGAA	2 cut(s)	17, 371
TspRI	CASTG	3 cut(s)	433, 601, 688
VpaK11BI	GGWCC	2 cut(s)	200, 336
XagI	CCTNNNNNAGG	1 cut(s)	183
XapI	RAATTY	2 cut(s)	358, 634
XcmI	CCANNNNNNNNNTGG	3 cut(s)	32, 107, 210
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	2 cut(s)	32, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.