Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007525.1

Orthogroup ID

OG0003656

Physical Location & Seq

Genomic Coordinates Reverse (-)

13308 .. 18244

Gene Structure 4937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007525.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggagcggttgttagagcctgagagaatgattgtattccgagttccatgggtggatgatagaggtgagacacatgttaaccgaggatttcgggtacaatttaaccaggctttgggtccctgtaggggtggtttcagatttcatccttctatgagcttgagcgttgccaagtttcttgcatttgaacagactttaaggaatgctttgtcaccgtacaaaattggaggggcagcaggtggaagtgattttgatccaaagggaaaaagtgataatgaggtgatgcgtttttgtcaaagttttatgaatgagatctatcgctatttgggtattgacaaggaccttccttcagaggagatgggtgttggaactcgggaaatgggatatcttttcggacaatatagacgtctagctggtcattttcagggaagttttacggggccaaggatattttggtctggctctagccttcgcactgaagctactggatatggtctggttttctttgcacagctcttgcttgcagacctgaataaagattttaaaggaataagatgtgttgtaagcggctgtggaaagattgcattgcatgtcctggagaagcttattgcgtatggtgctcttcctgttacagtttctggttcaaatatgccgtgtacaccagaggctgttgatgttctaagaaaatctaatgttctaattgctcctgcagtggctgctggtgctggtggggtagttgctggagaatttgaattgaaccatgagtgtaattcagtgaactggtcaccgcaggactttgagtctaagctacaggaagcaataaaacaaacttaccagagatcccttaaagcagcgcttgactttggctactccaaagaaagtcctgagtatttggtacatggagcagtcatttctgcttttctgactcttgctcaagctatgacggatcagggttgtgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004353 GO:0004354 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009987 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019752 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00910 ko01100 map00220 map00250 map00910 map01100

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

319

Amino Acids

35.08

Weight (kDa)

7.0

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51720 AT1G51720 AT1G51720 AT1G51720
fragaria_vesca	FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960
malus_domestica	MD09G1196200.v1.1 MD17G1176900.v1.1
prunus_persica	Prupe.3G052600_v2.0.a1 Prupe.3G052600_v2.0.a1
pyrus_communis	pycom09g11330 pycom17g18590
rosa_chinensis	RchiOBHm_Chr2g0142481 RchiOBHm_Chr2g0142511
rosa_laevigata	RLG00000019961
rosa_multiflora	Rmu_sc0007525.1_g000005 Rmu_sc0007525.1_g000011 Rmu_sc0012761.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102570
rosa_rugosa	Rorug02G0373100 Rorug02G0373200
rosa_samantha	Rh2AG424700 Rh2BG434400 Rh2BG434600 Rh2CG411400 Rh2DG444400 Rh2DG444600
rosa_wichuraiana	Rw2G034800 Rw2G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
AatII	GACGTC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	224
AccB7I	CCANNNNNTGG	1 cut(s)	112
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	3 cut(s)	7, 564, 785
AclWI	GGATC	3 cut(s)	245, 831, 951
AcsI	RAATTY	1 cut(s)	743
AcuI	CTGAAG	2 cut(s)	330, 495
AcyI	GRCGYC	1 cut(s)	403
AfaI	GTAC	4 cut(s)	96, 215, 655, 894
AfeI	AGCGCT	1 cut(s)	852
AfiI	CCNNNNNNNGG	2 cut(s)	112, 125
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	185, 642, 749, 754
AhdI	GACNNNNNGTC	1 cut(s)	796
AjnI	CCWGG	2 cut(s)	105, 591
AluBI	AGCT	7 cut(s)	156, 410, 479, 511, 601, 805, 935
AluI	AGCT	7 cut(s)	156, 410, 479, 511, 601, 805, 935
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	3 cut(s)	245, 831, 951
AlwNI	CAGNNNCTG	3 cut(s)	635, 665, 713
Ama87I	CYCGRG	1 cut(s)	369
Aor51HI	AGCGCT	1 cut(s)	852
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	3 cut(s)	230, 713, 848
ApoI	RAATTY	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	853
AspS9I	GGNCC	3 cut(s)	116, 337, 437
AsuHPI	GGTGA	4 cut(s)	77, 201, 289, 774
AvaI	CYCGRG	1 cut(s)	369
AvaII	GGWCC	2 cut(s)	116, 337
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	3 cut(s)	242, 700, 860
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	2 cut(s)	107, 593
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	2 cut(s)	407, 462
BfmI	CTRYAG	3 cut(s)	121, 705, 806
BfoI	RGCGCY	1 cut(s)	854
BfuAI	ACCTGC	1 cut(s)	224
BglII	AGATCT	1 cut(s)	309
BisI	GCNGC	4 cut(s)	231, 565, 714, 849
BlsI	GCNGC	4 cut(s)	232, 566, 715, 850
Bme1390I	CCNGG	2 cut(s)	107, 593
Bme18I	GGWCC	2 cut(s)	116, 337
BmeRI	GACNNNNNGTC	1 cut(s)	796
BmeT110I	CYCGRG	1 cut(s)	369
BmgT120I	GGNCC	3 cut(s)	116, 337, 437
BmiI	GGNNCC	3 cut(s)	117, 118, 438
BmrFI	CCNGG	2 cut(s)	107, 593
BmsI	GCATC	1 cut(s)	270
BpmI	CTGGAG	2 cut(s)	614, 759
BpuEI	CTTGAG	2 cut(s)	178, 915
BsaBI	GATNNNNATC	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	47, 82, 440
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 125
Bse1I	ACTGG	2 cut(s)	487, 782
Bse3DI	GCAATG	1 cut(s)	581
Bse8I	GATNNNNATC	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	107, 593
BseDI	CCNNGG	3 cut(s)	47, 82, 440
BseGI	GGATG	2 cut(s)	61, 142
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	2 cut(s)	112, 125
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	2 cut(s)	12, 873
BseNI	ACTGG	2 cut(s)	487, 782
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	3 cut(s)	242, 700, 860
BshFI	GGCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	112, 125
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp1407I	TGTACA	1 cut(s)	653
Bsp143I	GATC	4 cut(s)	250, 309, 836, 943
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	3 cut(s)	7, 564, 785
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	2 cut(s)	13, 874
BspLI	GGNNCC	3 cut(s)	117, 118, 438
BspMAI	CTGCAG	1 cut(s)	709
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	3 cut(s)	245, 831, 951
BspQI	GCTCTTC	1 cut(s)	624
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	653
BsrI	ACTGG	2 cut(s)	487, 782
BssECI	CCNNGG	3 cut(s)	47, 82, 440
BssMI	GATC	4 cut(s)	250, 309, 836, 943
BssNI	GRCGYC	1 cut(s)	403
BssT1I	CCWWGG	2 cut(s)	47, 440
Bst2UI	CCWGG	2 cut(s)	107, 593
Bst4CI	ACNGT	2 cut(s)	213, 631
Bst6I	CTCTTC	1 cut(s)	624
BstACI	GRCGYC	1 cut(s)	403
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	653
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	4 cut(s)	21, 677, 801, 882
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	780
BstF5I	GGATG	2 cut(s)	61, 142
BstH2I	RGCGCY	1 cut(s)	854
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	4 cut(s)	253, 312, 839, 946
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	250, 309, 836, 943
BstMWI	GCNNNNNNNGC	3 cut(s)	614, 713, 719
BstNI	CCWGG	2 cut(s)	107, 593
BstNSI	RCATGY	2 cut(s)	77, 590
BstPI	GGTNACC	1 cut(s)	780
BstSCI	CCNGG	2 cut(s)	105, 591
BstSFI	CTRYAG	3 cut(s)	121, 705, 806
BstV1I	GCAGC	3 cut(s)	242, 700, 860
BstX2I	RGATCY	2 cut(s)	309, 836
BstYI	RGATCY	2 cut(s)	309, 836
BsuRI	GGCC	1 cut(s)	439
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	61, 142
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	3 cut(s)	471, 714, 777
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	519
CaiI	CAGNNNCTG	3 cut(s)	635, 665, 713
CfoI	GCGC	1 cut(s)	853
Cfr13I	GGNCC	3 cut(s)	116, 337, 437
Csp6I	GTAC	4 cut(s)	95, 214, 654, 893
CviAII	CATG	5 cut(s)	48, 74, 587, 758, 896
CviQI	GTAC	4 cut(s)	95, 214, 654, 893
DdeI	CTNAG	4 cut(s)	21, 677, 801, 882
DpnI	GATC	4 cut(s)	252, 311, 838, 945
DpnII	GATC	4 cut(s)	250, 309, 836, 943
DraI	TTTAAA	1 cut(s)	541
DriI	GACNNNNNGTC	1 cut(s)	796
Eam1104I	CTCTTC	1 cut(s)	624
Eam1105I	GACNNNNNGTC	1 cut(s)	796
EarI	CTCTTC	1 cut(s)	624
Eco130I	CCWWGG	2 cut(s)	47, 440
Eco32I	GATATC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	116, 337
Eco47III	AGCGCT	1 cut(s)	852
Eco57I	CTGAAG	2 cut(s)	330, 495
Eco88I	CYCGRG	1 cut(s)	369
Eco91I	GGTNACC	1 cut(s)	780
EcoO109I	RGGNCCY	2 cut(s)	116, 337
EcoO65I	GGTNACC	1 cut(s)	780
EcoRII	CCWGG	2 cut(s)	105, 591
EcoRV	GATATC	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	47, 440
ErhI	CCWWGG	2 cut(s)	47, 440
FaeI	CATG	5 cut(s)	51, 77, 590, 761, 899
FalI	AAGNNNNNCTT	4 cut(s)	187, 219, 837, 869
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	5 cut(s)	47, 73, 586, 757, 895
Fnu4HI	GCNGC	4 cut(s)	231, 565, 714, 849
FokI	GGATG	2 cut(s)	68, 129
Fsp4HI	GCNGC	4 cut(s)	231, 565, 714, 849
FspBI	CTAG	2 cut(s)	407, 462
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	4 cut(s)	231, 565, 714, 849
GsuI	CTGGAG	2 cut(s)	614, 759
HaeII	RGCGCY	1 cut(s)	854
HaeIII	GGCC	1 cut(s)	439
HhaI	GCGC	1 cut(s)	853
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	5 cut(s)	51, 77, 590, 761, 899
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	2 cut(s)	797, 922
HpaI	GTTAAC	1 cut(s)	79
HphI	GGTGA	4 cut(s)	77, 201, 289, 774
Hpy166II	GTNNAC	4 cut(s)	79, 654, 656, 775
Hpy188I	TCNGA	5 cut(s)	41, 137, 349, 392, 921
Hpy188III	TCNNGA	2 cut(s)	371, 881
Hpy8I	GTNNAC	4 cut(s)	79, 654, 656, 775
HpyAV	CCTTC	4 cut(s)	156, 350, 354, 476
HpyCH4III	ACNGT	2 cut(s)	213, 631
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	6 cut(s)	179, 506, 521, 581, 586, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	614, 713, 719
HpyF3I	CTNAG	4 cut(s)	21, 677, 801, 882
HpySE526I	ACGT	1 cut(s)	403
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	5 cut(s)	51, 77, 590, 761, 899
HspAI	GCGC	1 cut(s)	851
KflI	GGGWCCC	1 cut(s)	116
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	250, 309, 836, 943
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	3 cut(s)	4, 706, 899
Lsp1109I	GCAGC	3 cut(s)	242, 700, 860
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	2 cut(s)	407, 462
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	3 cut(s)	207, 625, 780
MalI	GATC	4 cut(s)	252, 311, 838, 945
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	4 cut(s)	250, 309, 836, 943
MboII	GAAGA	1 cut(s)	611
MflI	RGATCY	2 cut(s)	309, 836
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	6 cut(s)	98, 219, 696, 743, 749, 766
MlyI	GAGTC	2 cut(s)	806, 916
MmeI	TCCRAC	1 cut(s)	343
MnlI	CCTC	6 cut(s)	56, 77, 218, 268, 343, 655
MseI	TTAA	5 cut(s)	78, 102, 194, 540, 843
MspR9I	CCNGG	2 cut(s)	107, 593
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	2 cut(s)	107, 593
MwoI	GCNNNNNNNGC	3 cut(s)	614, 713, 719
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	4 cut(s)	250, 309, 836, 943
NlaIII	CATG	5 cut(s)	51, 77, 590, 761, 899
NlaIV	GGNNCC	3 cut(s)	117, 118, 438
NmuCI	GTSAC	2 cut(s)	207, 780
NspI	RCATGY	2 cut(s)	77, 590
PaqCI	CACCTGC	1 cut(s)	224
PciI	ACATGT	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	112
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	4 cut(s)	232, 566, 715, 850
PleI	GAGTC	2 cut(s)	805, 916
PpsI	GAGTC	2 cut(s)	805, 916
PpuMI	RGGWCCY	2 cut(s)	116, 337
PscI	ACATGT	1 cut(s)	73
Psp5II	RGGWCCY	2 cut(s)	116, 337
Psp6I	CCWGG	2 cut(s)	105, 591
PspEI	GGTNACC	1 cut(s)	780
PspGI	CCWGG	2 cut(s)	105, 591
PspN4I	GGNNCC	3 cut(s)	117, 118, 438
PspPI	GGNCC	3 cut(s)	116, 337, 437
PspPPI	RGGWCCY	2 cut(s)	116, 337
PsrI	GAACNNNNNNTAC	2 cut(s)	27, 59
PstI	CTGCAG	1 cut(s)	709
PstNI	CAGNNNCTG	3 cut(s)	635, 665, 713
PsuI	RGATCY	2 cut(s)	309, 836
RsaI	GTAC	4 cut(s)	96, 215, 655, 894
RsaNI	GTAC	4 cut(s)	95, 214, 654, 893
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	5 cut(s)	78, 102, 194, 540, 843
SatI	GCNGC	4 cut(s)	231, 565, 714, 849
Sau3AI	GATC	4 cut(s)	250, 309, 836, 943
Sau96I	GGNCC	3 cut(s)	116, 337, 437
SchI	GAGTC	2 cut(s)	806, 916
ScrFI	CCNGG	2 cut(s)	107, 593
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	3 cut(s)	121, 705, 806
SinI	GGWCC	2 cut(s)	116, 337
SmlI	CTYRAG	2 cut(s)	157, 930
SmoI	CTYRAG	2 cut(s)	157, 930
Sse9I	AATT	6 cut(s)	98, 219, 696, 743, 749, 766
SsiI	CCGC	3 cut(s)	7, 564, 785
SspMI	CTAG	2 cut(s)	407, 462
StyD4I	CCNGG	2 cut(s)	105, 591
StyI	CCWWGG	2 cut(s)	47, 440
TaaI	ACNGT	2 cut(s)	213, 631
TaiI	ACGT	1 cut(s)	406
TasI	AATT	6 cut(s)	98, 219, 696, 743, 749, 766
TatI	WGTACW	1 cut(s)	653
TauI	GCSGC	1 cut(s)	567
Tru1I	TTAA	5 cut(s)	78, 102, 194, 540, 843
Tru9I	TTAA	5 cut(s)	78, 102, 194, 540, 843
TscAI	CASTG	3 cut(s)	478, 714, 777
TseFI	GTSAC	2 cut(s)	207, 780
TseI	GCWGC	3 cut(s)	230, 713, 848
Tsp45I	GTSAC	2 cut(s)	207, 780
TspDTI	ATGAA	2 cut(s)	131, 317
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	3 cut(s)	478, 714, 777
Van91I	CCANNNNNTGG	1 cut(s)	112
VpaK11BI	GGWCC	2 cut(s)	116, 337
XapI	RAATTY	1 cut(s)	743
XceI	RCATGY	2 cut(s)	77, 590
XcmI	CCANNNNNNNNNTGG	1 cut(s)	447
XspI	CTAG	2 cut(s)	407, 462
ZraI	GACGTC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.