Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003656

Physical Location & Seq

Genomic Coordinates Forward (+)

47592014 .. 47592253

Gene Structure 240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0373200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCCAATGGAAGCTCAATGTGGATGGAAGCTTCTTACCAAGCCTCACTCATGGTGGTACTGGAGGTGTACTTAGAGATGGTACAGGTGGTTTTAACATTTAAAGCAGCCTTTGCAAACCATGTTACTTCAGTAGCCTCAGCAAAGTATACAGAATTGATTGCCATCAGAGATGGCTTGAAGCTACTGCAAGACTTGCAAGCTGAAAATGTTCTTGTGGAGTCGGACTGCCTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004353 GO:0004354 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009987 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019752 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00910 ko01100 map00220 map00250 map00910 map01100

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

79

Amino Acids

8.73

Weight (kDa)

4.45

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51720 AT1G51720 AT1G51720 AT1G51720
fragaria_vesca	FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960
malus_domestica	MD09G1196200.v1.1 MD17G1176900.v1.1
prunus_persica	Prupe.3G052600_v2.0.a1 Prupe.3G052600_v2.0.a1
pyrus_communis	pycom09g11330 pycom17g18590
rosa_chinensis	RchiOBHm_Chr2g0142481 RchiOBHm_Chr2g0142511
rosa_laevigata	RLG00000019961
rosa_multiflora	Rmu_sc0007525.1_g000005 Rmu_sc0007525.1_g000011 Rmu_sc0012761.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102570
rosa_rugosa	Rorug02G0373100 Rorug02G0373200
rosa_samantha	Rh2AG424700 Rh2BG434400 Rh2BG434600 Rh2CG411400 Rh2DG444400 Rh2DG444600
rosa_wichuraiana	Rw2G034800 Rw2G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	3 cut(s)	60, 71, 84
AgsI	TTSAA	2 cut(s)	181, 236
AluBI	AGCT	4 cut(s)	15, 32, 184, 203
AluI	AGCT	4 cut(s)	15, 32, 184, 203
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	107
Asp700I	GAANNNNTTC	1 cut(s)	210
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	4 cut(s)	19, 73, 167, 173
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	66
Bse8I	GATNNNNATC	1 cut(s)	164
BseGI	GGATG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	66
BssNAI	GTATAC	1 cut(s)	150
Bst1107I	GTATAC	1 cut(s)	150
BstAPI	GCANNNNNTGC	2 cut(s)	113, 196
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	73, 139
BstF5I	GGATG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 196
BstV1I	GCAGC	1 cut(s)	119
BstZ17I	GTATAC	1 cut(s)	150
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	201
Csp6I	GTAC	3 cut(s)	59, 70, 83
CviAII	CATG	2 cut(s)	52, 122
CviJI	RGCY	9 cut(s)	5, 15, 32, 44, 110, 137, 177, 184, 203
CviKI_1	RGCY	9 cut(s)	5, 15, 32, 44, 110, 137, 177, 184, 203
CviQI	GTAC	3 cut(s)	59, 70, 83
DdeI	CTNAG	2 cut(s)	73, 139
DraI	TTTAAA	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	3
Eco57I	CTGAAG	1 cut(s)	114
FaeI	CATG	2 cut(s)	55, 125
FaiI	YATR	3 cut(s)	53, 123, 150
FatI	CATG	2 cut(s)	51, 121
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	55, 125
HindIII	AAGCTT	1 cut(s)	30
HinfI	GANTC	1 cut(s)	221
Hpy166II	GTNNAC	2 cut(s)	70, 150
Hpy188I	TCNGA	2 cut(s)	170, 226
Hpy8I	GTNNAC	2 cut(s)	70, 150
HpyCH4V	TGCA	3 cut(s)	116, 190, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 196
HpyF3I	CTNAG	2 cut(s)	73, 139
Hsp92II	CATG	2 cut(s)	55, 125
LpnPI	CCDG	2 cut(s)	47, 71
Lsp1109I	GCAGC	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	230
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	3 cut(s)	55, 58, 148
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	95, 102
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	2 cut(s)	113, 196
NlaIII	CATG	2 cut(s)	55, 125
PdmI	GAANNNNTTC	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
RsaI	GTAC	3 cut(s)	60, 71, 84
RsaNI	GTAC	3 cut(s)	59, 70, 83
SaqAI	TTAA	2 cut(s)	95, 102
SatI	GCNGC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	230
SetI	ASST	6 cut(s)	17, 34, 69, 90, 186, 205
Sse9I	AATT	1 cut(s)	155
TasI	AATT	1 cut(s)	155
TatI	WGTACW	1 cut(s)	69
Tru1I	TTAA	2 cut(s)	95, 102
Tru9I	TTAA	2 cut(s)	95, 102
TseI	GCWGC	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.