Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012761.1

Orthogroup ID

OG0003656

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1079

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

atgagcttgagcgttgccaagtttcttgcatttgaacagactttaaggaatgctttgtcaccgtacaaaattggaggggcagcaggtggaagtgattttgatccaaagggaaaaagtgataatgaggtgatgcgtttttgtcaaagttttatgaatgagatctatcgctatttgggtattgacaaggaccttccttcagaggagatgggtgttggaactcgggaaatgggatatcttttcggacaatatagacgtctagctggtcattttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004353 GO:0004354 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009987 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019752 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00910 ko01100 map00220 map00250 map00910 map01100

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

91

Amino Acids

10.24

Weight (kDa)

6.56

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51720 AT1G51720 AT1G51720 AT1G51720
fragaria_vesca	FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960
malus_domestica	MD09G1196200.v1.1 MD17G1176900.v1.1
prunus_persica	Prupe.3G052600_v2.0.a1 Prupe.3G052600_v2.0.a1
pyrus_communis	pycom09g11330 pycom17g18590
rosa_chinensis	RchiOBHm_Chr2g0142481 RchiOBHm_Chr2g0142511
rosa_laevigata	RLG00000019961
rosa_multiflora	Rmu_sc0007525.1_g000005 Rmu_sc0007525.1_g000011 Rmu_sc0012761.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102570
rosa_rugosa	Rorug02G0373100 Rorug02G0373200
rosa_samantha	Rh2AG424700 Rh2BG434400 Rh2BG434600 Rh2CG411400 Rh2DG444400 Rh2DG444600
rosa_wichuraiana	Rw2G034800 Rw2G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
AatII	GACGTC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	35
AluBI	AGCT	2 cut(s)	6, 260
AluI	AGCT	2 cut(s)	6, 260
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	219
ApeKI	GCWGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	51, 139
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	257
BfuAI	ACCTGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	159
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	187
BmsI	GCATC	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	92
BsiHKCI	CYCGRG	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	100, 159
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	95
BssMI	GATC	2 cut(s)	100, 159
BssNI	GRCGYC	1 cut(s)	253
Bst4CI	ACNGT	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	253
BstKTI	GATC	2 cut(s)	103, 162
BstMBI	GATC	2 cut(s)	100, 159
BstV1I	GCAGC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	74
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	2 cut(s)	6, 260
CviKI_1	RGCY	2 cut(s)	6, 260
CviQI	GTAC	1 cut(s)	64
DpnI	GATC	2 cut(s)	102, 161
DpnII	GATC	2 cut(s)	100, 159
Eco32I	GATATC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	233
FaiI	YATR	2 cut(s)	152, 249
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	253
HphI	GGTGA	2 cut(s)	51, 139
Hpy188I	TCNGA	2 cut(s)	199, 242
Hpy188III	TCNNGA	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	200, 204
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	253
Hsp92I	GRCGYC	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	100, 159
LpnPI	CCDG	2 cut(s)	69, 246
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	57
MalI	GATC	2 cut(s)	102, 161
MboI	GATC	2 cut(s)	100, 159
MflI	RGATCY	1 cut(s)	159
MluCI	AATT	1 cut(s)	69
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	68, 118, 193
MseI	TTAA	1 cut(s)	44
Mva1269I	GAATGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	100, 159
NmuCI	GTSAC	1 cut(s)	57
PaqCI	CACCTGC	1 cut(s)	74
PctI	GAATGC	1 cut(s)	55
PkrI	GCNGC	1 cut(s)	82
PpuMI	RGGWCCY	1 cut(s)	187
Psp5II	RGGWCCY	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	187
PspPPI	RGGWCCY	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	159
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	100, 159
Sau96I	GGNCC	1 cut(s)	187
SetI	ASST	6 cut(s)	8, 88, 129, 192, 256, 262
SfaNI	GCATC	1 cut(s)	120
SgeI	CNNG	8 cut(s)	19, 31, 38, 96, 196, 231, 233, 269
SinI	GGWCC	1 cut(s)	187
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	256
TasI	AATT	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	57
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	187
XspI	CTAG	1 cut(s)	257
ZraI	GACGTC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.