Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007525.1

Orthogroup ID

OG0003656

Physical Location & Seq

Genomic Coordinates Reverse (-)

41261 .. 45240

Gene Structure 3980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007525.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgttgcttccggtcagcggatcagtgatgaataccatgatggatgatatgaacttgatccagcaagcacagagacatcatttagtggttagggagcttggagaagaaattgatttagaaattggaccgggggatgatgatccttcatttgcaaacacccccctcattggtggtccaacacgagagccttctgttgaggacaatgatgagagcaaaaatatggtaatgatttctcaactccgcggtcacgatcaagatatgtcaaaggcacaaccggcaaaaaggaagaaaaaggttgtgaaaagatggagagaggaatgggctgatacctacaaatgggcttatgttgatgtcaaggaagggacagctaggatattttgctctatatgtagagagtacggtaggaagcatagaagaaatccctatggaaatgagggtagccgaaatatgcagatgagtgcacttgaggaacacaataatagtttgcttcacaaagaggcactgcgccttcagttggcctccaaggataagattattgttgacaaacccatttatgtcaaagctcttatgtcaaaaacggctggatcaattgttgaagctgcactgaaaagggatcctaatgaggttgagttcatacaatcggtgcaggaagtagttcatgctttagaaagagtgatcgcaaaaaattctcattatgtaaacatcatggagcggttgttagagcctgagagaatgattgtattccgagttccatgggtggatgatagaggtgagacacatgttaaccgaggatttcgggtacaatttaaccaggctttgggttcaaatatgccgtgtacaccagaggctgttgatgttctaagaaaatctaatgttctaattgctcctgcagtggctgctggtgctgagttaagctttatcaacccaagctggtttacttgcaaaacaatactgaattcagcatcccatgggatcattattcaacgtcaatggtttttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004353 GO:0004354 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006536 GO:0006537 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009987 GO:0016053 GO:0016491 GO:0016638 GO:0016639 GO:0019752 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0055114 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00910 ko01100 map00220 map00250 map00910 map01100

Pfam Domains

Protein Families

ELFV_dehydrog ELFV_dehydrog_N

Protein Analysis

333

Amino Acids

37.9

Weight (kDa)

7.16

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51720 AT1G51720 AT1G51720 AT1G51720
fragaria_vesca	FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960 FvH4_6g32960
malus_domestica	MD09G1196200.v1.1 MD17G1176900.v1.1
prunus_persica	Prupe.3G052600_v2.0.a1 Prupe.3G052600_v2.0.a1
pyrus_communis	pycom09g11330 pycom17g18590
rosa_chinensis	RchiOBHm_Chr2g0142481 RchiOBHm_Chr2g0142511
rosa_laevigata	RLG00000019961
rosa_multiflora	Rmu_sc0007525.1_g000005 Rmu_sc0007525.1_g000011 Rmu_sc0012761.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102570
rosa_rugosa	Rorug02G0373100 Rorug02G0373200
rosa_samantha	Rh2AG424700 Rh2BG434400 Rh2BG434600 Rh2CG411400 Rh2DG444400 Rh2DG444600
rosa_wichuraiana	Rw2G034800 Rw2G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	817
AccBSI	CCGCTC	1 cut(s)	712
AccII	CGCG	1 cut(s)	243
AciI	CCGC	4 cut(s)	18, 241, 243, 712
AclWI	GGATC	7 cut(s)	28, 52, 134, 592, 608, 621, 980
AcsI	RAATTY	2 cut(s)	685, 955
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	398, 801, 838
AfiI	CCNNNNNNNGG	5 cut(s)	17, 167, 336, 514, 817
AflIII	ACRYGT	1 cut(s)	778
AgsI	TTSAA	3 cut(s)	596, 825, 983
AjnI	CCWGG	1 cut(s)	810
AluBI	AGCT	6 cut(s)	97, 368, 563, 599, 915, 930
AluI	AGCT	6 cut(s)	97, 368, 563, 599, 915, 930
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	2 cut(s)	67, 767
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	7 cut(s)	28, 52, 134, 592, 608, 621, 980
AlwNI	CAGNNNCTG	2 cut(s)	848, 896
AoxI	GGCC	1 cut(s)	516
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	2 cut(s)	599, 896
ApoI	RAATTY	2 cut(s)	685, 955
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	2 cut(s)	125, 173
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	782
AvaII	GGWCC	2 cut(s)	125, 173
BaeGI	GKGCMC	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	613
BauI	CACGAG	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	586, 883
BccI	CCATC	2 cut(s)	34, 300
BceAI	ACGGC	2 cut(s)	594, 817
BciT130I	CCWGG	1 cut(s)	812
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	67, 767
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	888
BisI	GCNGC	2 cut(s)	600, 897
BlsI	GCNGC	2 cut(s)	601, 898
Bme1390I	CCNGG	2 cut(s)	129, 812
Bme18I	GGWCC	2 cut(s)	125, 173
BmgT120I	GGNCC	2 cut(s)	125, 173
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	129, 812
BmsI	GCATC	1 cut(s)	971
BpuEI	CTTGAG	1 cut(s)	485
BpuMI	CCSGG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	6 cut(s)	128, 241, 522, 752, 787, 967
BsaWI	WCCGGW	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 167, 336, 514, 817
Bse118I	RCCGGY	1 cut(s)	274
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	6 cut(s)	128, 241, 522, 752, 787, 967
BseGI	GGATG	4 cut(s)	49, 139, 766, 962
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	5 cut(s)	17, 167, 336, 514, 817
BseMII	CTCAG	2 cut(s)	717, 897
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	2 cut(s)	586, 883
BsgI	GTGCAG	2 cut(s)	585, 665
Bsh1236I	CGCG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	3 cut(s)	11, 128, 275
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	5 cut(s)	17, 167, 336, 514, 817
BsmAI	GTCTC	2 cut(s)	67, 767
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1407I	TGTACA	1 cut(s)	836
Bsp143I	GATC	8 cut(s)	20, 57, 139, 250, 584, 613, 675, 972
Bsp19I	CCATGG	2 cut(s)	752, 967
BspACI	CCGC	4 cut(s)	18, 241, 243, 712
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	2 cut(s)	718, 898
BspFNI	CGCG	1 cut(s)	243
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	1 cut(s)	892
BspPI	GGATC	7 cut(s)	28, 52, 134, 592, 608, 621, 980
BsrBI	CCGCTC	1 cut(s)	712
BsrFI	RCCGGY	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	836
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	6 cut(s)	128, 241, 522, 752, 787, 967
BssMI	GATC	8 cut(s)	20, 57, 139, 250, 584, 613, 675, 972
BssSI	CACGAG	1 cut(s)	180
BssT1I	CCWWGG	3 cut(s)	522, 752, 967
Bst2BI	CACGAG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	1 cut(s)	401
BstAPI	GCANNNNNTGC	1 cut(s)	896
BstAUI	TGTACA	1 cut(s)	836
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	726, 860, 906
BstDSI	CCRYGG	3 cut(s)	241, 752, 967
BstF5I	GGATG	4 cut(s)	49, 139, 766, 962
BstFNI	CGCG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	8 cut(s)	23, 60, 142, 253, 587, 616, 678, 975
BstMAI	GTCTC	2 cut(s)	67, 767
BstMBI	GATC	8 cut(s)	20, 57, 139, 250, 584, 613, 675, 972
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 896, 902
BstNI	CCWGG	1 cut(s)	812
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	2 cut(s)	127, 810
BstSFI	CTRYAG	1 cut(s)	888
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	243
BstV1I	GCAGC	2 cut(s)	586, 883
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	518
BtgI	CCRYGG	3 cut(s)	241, 752, 967
BtsCI	GGATG	4 cut(s)	49, 139, 766, 962
BtsI	GCAGTG	2 cut(s)	500, 897
BtsIMutI	CAGTG	4 cut(s)	30, 500, 602, 897
Cac8I	GCNNGC	1 cut(s)	66
CaiI	CAGNNNCTG	2 cut(s)	848, 896
CfoI	GCGC	1 cut(s)	507
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	125, 173
Cfr42I	CCGCGG	1 cut(s)	244
Csp6I	GTAC	3 cut(s)	397, 800, 837
CviAII	CATG	6 cut(s)	37, 659, 706, 753, 779, 968
CviQI	GTAC	3 cut(s)	397, 800, 837
DdeI	CTNAG	3 cut(s)	726, 860, 906
DpnI	GATC	8 cut(s)	22, 59, 141, 252, 586, 615, 677, 974
DpnII	GATC	8 cut(s)	20, 57, 139, 250, 584, 613, 675, 972
Eco130I	CCWWGG	3 cut(s)	522, 752, 967
Eco47I	GGWCC	2 cut(s)	125, 173
Eco57I	CTGAAG	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	955
EcoRII	CCWGG	1 cut(s)	810
EcoT14I	CCWWGG	3 cut(s)	522, 752, 967
ErhI	CCWWGG	3 cut(s)	522, 752, 967
FaeI	CATG	6 cut(s)	40, 662, 709, 756, 782, 971
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	6 cut(s)	36, 658, 705, 752, 778, 967
Fnu4HI	GCNGC	2 cut(s)	600, 897
FokI	GGATG	4 cut(s)	56, 146, 773, 949
Fsp4HI	GCNGC	2 cut(s)	600, 897
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	2 cut(s)	600, 897
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	3 cut(s)	11, 128, 275
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	6 cut(s)	40, 662, 709, 756, 782, 971
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HincII	GTYRAC	2 cut(s)	541, 784
HindII	GTYRAC	2 cut(s)	541, 784
HindIII	AAGCTT	1 cut(s)	913
HpaI	GTTAAC	1 cut(s)	784
HpaII	CCGG	3 cut(s)	11, 128, 275
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	7 cut(s)	461, 541, 700, 784, 837, 839, 936
Hpy188I	TCNGA	1 cut(s)	746
Hpy188III	TCNNGA	2 cut(s)	248, 254
Hpy8I	GTNNAC	7 cut(s)	461, 541, 700, 784, 837, 839, 936
HpyAV	CCTTC	4 cut(s)	153, 198, 353, 518
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	1 cut(s)	985
HpyCH4V	TGCA	7 cut(s)	152, 451, 461, 602, 646, 890, 942
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 896, 902
HpyF3I	CTNAG	3 cut(s)	726, 860, 906
HpySE526I	ACGT	1 cut(s)	985
Hsp92II	CATG	6 cut(s)	40, 662, 709, 756, 782, 971
HspAI	GCGC	1 cut(s)	505
KspAI	GTTAAC	1 cut(s)	784
KspI	CCGCGG	1 cut(s)	244
Kzo9I	GATC	8 cut(s)	20, 57, 139, 250, 584, 613, 675, 972
LmnI	GCTCC	3 cut(s)	94, 709, 889
Lsp1109I	GCAGC	2 cut(s)	586, 883
LweI	GCATC	1 cut(s)	971
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	985
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	8 cut(s)	22, 59, 141, 252, 586, 615, 677, 974
MbiI	CCGCTC	1 cut(s)	712
MboI	GATC	8 cut(s)	20, 57, 139, 250, 584, 613, 675, 972
MboII	GAAGA	3 cut(s)	116, 298, 426
MfeI	CAATTG	1 cut(s)	588
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	7 cut(s)	108, 120, 588, 685, 803, 879, 955
MmeI	TCCRAC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	3 cut(s)	783, 807, 911
MspA1I	CMGCKG	2 cut(s)	18, 243
MspI	CCGG	3 cut(s)	11, 128, 275
MspR9I	CCNGG	2 cut(s)	129, 812
MunI	CAATTG	1 cut(s)	588
MvaI	CCWGG	1 cut(s)	812
MvnI	CGCG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	275, 896, 902
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	2 cut(s)	752, 967
NdeII	GATC	8 cut(s)	20, 57, 139, 250, 584, 613, 675, 972
NlaIII	CATG	6 cut(s)	40, 662, 709, 756, 782, 971
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	782
PciI	ACATGT	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	654
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	2 cut(s)	601, 898
PscI	ACATGT	1 cut(s)	778
Psp6I	CCWGG	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	125, 173
PsrI	GAACNNNNNNTAC	2 cut(s)	732, 764
PstI	CTGCAG	1 cut(s)	892
PstNI	CAGNNNCTG	2 cut(s)	848, 896
PsuI	RGATCY	1 cut(s)	613
RsaI	GTAC	3 cut(s)	398, 801, 838
RsaNI	GTAC	3 cut(s)	397, 800, 837
SacII	CCGCGG	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	783, 807, 911
SatI	GCNGC	2 cut(s)	600, 897
Sau3AI	GATC	8 cut(s)	20, 57, 139, 250, 584, 613, 675, 972
Sau96I	GGNCC	2 cut(s)	125, 173
ScrFI	CCNGG	2 cut(s)	129, 812
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	1 cut(s)	971
SfcI	CTRYAG	1 cut(s)	888
Sfr303I	CCGCGG	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	125, 173
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	7 cut(s)	108, 120, 588, 685, 803, 879, 955
SsiI	CCGC	4 cut(s)	18, 241, 243, 712
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	127, 810
StyI	CCWWGG	3 cut(s)	522, 752, 967
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	1 cut(s)	988
TasI	AATT	7 cut(s)	108, 120, 588, 685, 803, 879, 955
TatI	WGTACW	1 cut(s)	836
Tru1I	TTAA	3 cut(s)	783, 807, 911
Tru9I	TTAA	3 cut(s)	783, 807, 911
TscAI	CASTG	4 cut(s)	30, 507, 609, 897
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	2 cut(s)	599, 896
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	5 cut(s)	44, 65, 135, 622, 647
TspRI	CASTG	4 cut(s)	30, 507, 609, 897
Van91I	CCANNNNNTGG	1 cut(s)	817
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	2 cut(s)	125, 173
XapI	RAATTY	2 cut(s)	685, 955
XceI	RCATGY	1 cut(s)	782
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.