Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008296.1

Orthogroup ID

OG0013641

Physical Location & Seq

Genomic Coordinates Reverse (-)

18048 .. 19262

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008296.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgcagcgccagacttcctttgtttcagggcatagacagtcagagaaacgtcacaaggtgcttgatgaagcatctccacagggttttctggctgataacctgcgacaattgctgattgcatgtgctgaagcactttctgacaacaatatggatggttttgagaagttgattgaaaaggctagaggtgctgtgtctatcagtggagaaccaattcagcgtcttggagcttacatggtagaagggctggttgcaaggaaggaggcttcgggctccaatttctaccgtgccctcaggtgcagggagcctgaaagcgatgacttgctctcatacatgcacattctgtatgagatctgcccctatttaaagttcggttacatggcagccaatggggccattgctgacgcctgcagaaatgaggaccgtatccacattatagacttccagattgctcaaggtactcaatgggtgactctccttcaagctcttgcagcaagacccagtggggctccccatgtacgaattacaggtatcgatgaccctgtttctaagtatgctcgtggtgatggcttggaggcagtaggaagacggttgaaagcaatctctgagaaatttaacatccctgttgaatttcacggggttccagtttttgcacctgatgtcacaccggacatgcttgatgtcaggcctggtgaggctctagcagtgaactttcccctgcagcttcaccacacaccagatgaaagcgttgatgtgaacaatccaagggatggacttctgaggatagtcaagtcactatctccaaaggtgactactttggttgagcaagaatcaaacacgaatacaacccctttcttgaatcggtttatagagactctagactactatttggcaatgtttgagtctattgacgtgactctgccgaggaacagcaaggagaggatcaacgtggagcagcattgtctggctcgagatattgtaaatgtgattgcctgcgaaggaaaggaaagggtggaacgccacgagctctttgggaagtggaagtccaggttgacaatggcaggatttcggcaatacccattaagctcatatgtcaactctgtcataaggagtctactgaggtgttactcagagcattataagctggaggagaaggatggtgctatgctgttgggatggaaggagaggaacttggtatcagcttctgcgtggcactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

404

Amino Acids

45.56

Weight (kDa)

6.33

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g21580 FvH4_3g21580
malus_domestica	MD03G1214700.v1.1 MD11G1229600.v1.1
prunus_persica	Prupe.4G200200_v2.0.a1 Prupe.4G200200_v2.0.a1
pyrus_communis	pycom11g20270
rosa_chinensis	RchiOBHm_Chr5g0037031
rosa_laevigata	RLG00000033745
rosa_multiflora	Rmu_sc0008296.1_g000004 Rmu_ssc0000062.1_g000042
rosa_roxburghii	Rroxscaffold_1G00043910
rosa_rugosa	Rorug05G0159800
rosa_samantha	Rh5AG252000 Rh5BG253600 Rh5CG286300 Rh5DG262200
rosa_wichuraiana	Rw5G023220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
Acc36I	ACCTGC	1 cut(s)	108
AccB7I	CCANNNNNTGG	1 cut(s)	767
AccI	GTMKAC	1 cut(s)	1111
AclWI	GGATC	1 cut(s)	947
AcsI	RAATTY	2 cut(s)	608, 626
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	58
AfaI	GTAC	2 cut(s)	457, 516
AfiI	CCNNNNNNNGG	1 cut(s)	767
AgsI	TTSAA	5 cut(s)	173, 479, 592, 626, 856
AjiI	CACGTC	1 cut(s)	910
AjnI	CCWGG	2 cut(s)	685, 1043
AluBI	AGCT	7 cut(s)	227, 482, 721, 1024, 1083, 1141, 1199
AluI	AGCT	7 cut(s)	227, 482, 721, 1024, 1083, 1141, 1199
Alw21I	GWGCWC	1 cut(s)	1026
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	1 cut(s)	947
AlwNI	CAGNNNCTG	1 cut(s)	1202
Ama87I	CYCGRG	1 cut(s)	966
AoxI	GGCC	2 cut(s)	390, 683
ApeKI	GCWGC	5 cut(s)	4, 380, 488, 718, 952
ApoI	RAATTY	2 cut(s)	608, 626
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	390, 418
AsuHPI	GGTGA	5 cut(s)	478, 572, 701, 716, 817
AvaI	CYCGRG	1 cut(s)	966
AvaII	GGWCC	1 cut(s)	418
AxyI	CCTNAGG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	289
BanII	GRGCYC	3 cut(s)	272, 508, 1026
BauI	CACGAG	2 cut(s)	555, 1019
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	1 cut(s)	1026
BbvI	GCAGC	5 cut(s)	16, 392, 500, 730, 964
BccI	CCATC	5 cut(s)	146, 557, 761, 1148, 1167
BciT130I	CCWGG	2 cut(s)	687, 1045
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	3 cut(s)	180, 698, 875
BfmI	CTRYAG	2 cut(s)	406, 716
BfoI	RGCGCY	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	434
BglI	GCCNNNNNGGC	1 cut(s)	389
BglII	AGATCT	1 cut(s)	348
BisI	GCNGC	5 cut(s)	5, 381, 489, 719, 953
BlsI	GCNGC	5 cut(s)	6, 382, 490, 720, 954
Bme1390I	CCNGG	2 cut(s)	687, 1045
Bme18I	GGWCC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	966
BmgBI	CACGTC	1 cut(s)	910
BmgT120I	GGNCC	2 cut(s)	390, 418
BmiI	GGNNCC	5 cut(s)	271, 303, 391, 507, 639
BmrFI	CCNGG	2 cut(s)	687, 1045
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	492
BpiI	GAAGAC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	1163
BpuEI	CTTGAG	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	761, 920
BsaWI	WCCGGW	1 cut(s)	664
Bsc4I	CCNNNNNNNGG	1 cut(s)	767
Bse1I	ACTGG	2 cut(s)	498, 641
Bse21I	CCTNAGG	1 cut(s)	290
Bse3DI	GCAATG	2 cut(s)	393, 897
BseBI	CCWGG	2 cut(s)	687, 1045
BseCI	ATCGAT	1 cut(s)	531
BseDI	CCNNGG	2 cut(s)	761, 920
BseGI	GGATG	5 cut(s)	157, 615, 772, 1159, 1178
BseLI	CCNNNNNNNGG	1 cut(s)	767
BseMI	GCAATG	2 cut(s)	393, 897
BseMII	CTCAG	5 cut(s)	304, 594, 767, 1106, 1140
BseNI	ACTGG	2 cut(s)	498, 641
BseRI	GAGGAG	1 cut(s)	1160
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	5 cut(s)	16, 392, 500, 730, 964
BsgI	GTGCAG	1 cut(s)	316
BshFI	GGCC	2 cut(s)	392, 685
BshVI	ATCGAT	1 cut(s)	531
BsiHKAI	GWGCWC	1 cut(s)	1026
BsiHKCI	CYCGRG	1 cut(s)	966
BsiSI	CCGG	1 cut(s)	665
BslI	CCNNNNNNNGG	1 cut(s)	767
BsmAI	GTCTC	1 cut(s)	863
BsnI	GGCC	2 cut(s)	392, 685
BsoBI	CYCGRG	1 cut(s)	966
Bsp1286I	GDGCHC	4 cut(s)	272, 289, 508, 1026
Bsp143I	GATC	2 cut(s)	348, 939
BspANI	GGCC	2 cut(s)	392, 685
BspCNI	CTCAG	5 cut(s)	303, 595, 768, 1107, 1139
BspDI	ATCGAT	1 cut(s)	531
BspLI	GGNNCC	5 cut(s)	271, 303, 391, 507, 639
BspMAI	CTGCAG	2 cut(s)	410, 720
BspMI	ACCTGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	947
BsrDI	GCAATG	2 cut(s)	393, 897
BsrI	ACTGG	2 cut(s)	498, 641
BssECI	CCNNGG	2 cut(s)	761, 920
BssMI	GATC	2 cut(s)	348, 939
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	2 cut(s)	555, 1019
BssT1I	CCWWGG	1 cut(s)	761
Bst2BI	CACGAG	2 cut(s)	555, 1019
Bst2UI	CCWGG	2 cut(s)	687, 1045
Bst4CI	ACNGT	4 cut(s)	39, 284, 422, 588
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	406, 991
BstDEI	CTNAG	6 cut(s)	290, 546, 603, 776, 1115, 1126
BstF5I	GGATG	5 cut(s)	157, 615, 772, 1159, 1178
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	351, 942
BstMAI	GTCTC	1 cut(s)	863
BstMBI	GATC	2 cut(s)	348, 939
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 185, 389, 488, 1138
BstNI	CCWGG	2 cut(s)	687, 1045
BstNSI	RCATGY	3 cut(s)	123, 334, 673
BstSCI	CCNGG	2 cut(s)	685, 1043
BstSFI	CTRYAG	2 cut(s)	406, 716
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	5 cut(s)	16, 392, 500, 730, 964
BstV2I	GAAGAC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
Bsu15I	ATCGAT	1 cut(s)	531
Bsu36I	CCTNAGG	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	2 cut(s)	392, 685
BsuTUI	ATCGAT	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	910
BtsCI	GGATG	5 cut(s)	157, 615, 772, 1159, 1178
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	4 cut(s)	205, 505, 708, 1210
BveI	ACCTGC	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	406, 991
CaiI	CAGNNNCTG	1 cut(s)	1202
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	390, 418
ClaI	ATCGAT	1 cut(s)	531
CseI	GACGC	2 cut(s)	206, 410
Csp6I	GTAC	2 cut(s)	456, 515
CviAII	CATG	6 cut(s)	120, 232, 331, 376, 512, 670
CviQI	GTAC	2 cut(s)	456, 515
DdeI	CTNAG	6 cut(s)	290, 546, 603, 776, 1115, 1126
DpnI	GATC	2 cut(s)	350, 941
DpnII	GATC	2 cut(s)	348, 939
DraI	TTTAAA	1 cut(s)	363
DraIII	CACNNNGTG	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	1024
Eco130I	CCWWGG	1 cut(s)	761
Eco147I	AGGCCT	1 cut(s)	685
Eco24I	GRGCYC	3 cut(s)	272, 508, 1026
Eco47I	GGWCC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	1024
Eco57I	CTGAAG	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	966
EcoICRI	GAGCTC	1 cut(s)	1024
EcoRII	CCWGG	2 cut(s)	685, 1043
EcoT14I	CCWWGG	1 cut(s)	761
EcoT38I	GRGCYC	3 cut(s)	272, 508, 1026
ErhI	CCWWGG	1 cut(s)	761
FaeI	CATG	6 cut(s)	123, 235, 334, 379, 515, 673
FatI	CATG	6 cut(s)	119, 231, 330, 375, 511, 669
FauNDI	CATATG	1 cut(s)	1087
FblI	GTMKAC	1 cut(s)	1111
Fnu4HI	GCNGC	5 cut(s)	5, 381, 489, 719, 953
FokI	GGATG	5 cut(s)	164, 602, 779, 1166, 1185
FriOI	GRGCYC	3 cut(s)	272, 508, 1026
Fsp4HI	GCNGC	5 cut(s)	5, 381, 489, 719, 953
FspBI	CTAG	3 cut(s)	180, 698, 875
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	5 cut(s)	5, 381, 489, 719, 953
GsuI	CTGGAG	1 cut(s)	1163
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	2 cut(s)	392, 685
HapII	CCGG	1 cut(s)	665
HgaI	GACGC	2 cut(s)	206, 410
HhaI	GCGC	1 cut(s)	9
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	6 cut(s)	123, 235, 334, 379, 515, 673
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	2 cut(s)	1050, 1093
HindII	GTYRAC	2 cut(s)	1050, 1093
HinfI	GANTC	7 cut(s)	469, 827, 856, 871, 899, 913, 1108
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	5 cut(s)	478, 572, 701, 716, 817
Hpy166II	GTNNAC	5 cut(s)	706, 754, 1050, 1093, 1112
Hpy188I	TCNGA	5 cut(s)	43, 139, 604, 777, 1129
Hpy188III	TCNNGA	4 cut(s)	442, 853, 875, 968
Hpy8I	GTNNAC	5 cut(s)	706, 754, 1050, 1093, 1112
HpyAV	CCTTC	6 cut(s)	233, 250, 485, 989, 1144, 1171
HpyCH4III	ACNGT	4 cut(s)	39, 284, 422, 588
HpyCH4IV	ACGT	3 cut(s)	49, 909, 945
HpyCH4V	TGCA	9 cut(s)	4, 119, 251, 297, 334, 408, 488, 650, 718
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 185, 389, 488, 1138
HpyF3I	CTNAG	6 cut(s)	290, 546, 603, 776, 1115, 1126
HpySE526I	ACGT	3 cut(s)	49, 909, 945
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	6 cut(s)	123, 235, 334, 379, 515, 673
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	348, 939
LmnI	GCTCC	5 cut(s)	224, 275, 301, 511, 949
Lsp1109I	GCAGC	5 cut(s)	16, 392, 500, 730, 964
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	3 cut(s)	180, 698, 875
MaeII	ACGT	3 cut(s)	49, 909, 945
MaeIII	GTNAC	8 cut(s)	50, 371, 466, 658, 789, 805, 910, 1121
MalI	GATC	2 cut(s)	350, 941
MboI	GATC	2 cut(s)	348, 939
MboII	GAAGA	1 cut(s)	594
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	4 cut(s)	272, 289, 508, 1026
MluCI	AATT	6 cut(s)	107, 210, 274, 519, 608, 626
MlyI	GAGTC	5 cut(s)	463, 865, 907, 908, 1117
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	3 cut(s)	362, 612, 1079
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	2 cut(s)	687, 1045
MunI	CAATTG	1 cut(s)	107
MvaI	CCWGG	2 cut(s)	687, 1045
MwoI	GCNNNNNNNGC	5 cut(s)	109, 185, 389, 488, 1138
NdeI	CATATG	1 cut(s)	1087
NdeII	GATC	2 cut(s)	348, 939
NlaIII	CATG	6 cut(s)	123, 235, 334, 379, 515, 673
NlaIV	GGNNCC	5 cut(s)	271, 303, 391, 507, 639
NmeAIII	GCCGAG	1 cut(s)	945
NmuCI	GTSAC	6 cut(s)	50, 466, 658, 789, 805, 910
NspI	RCATGY	3 cut(s)	123, 334, 673
PaeR7I	CTCGAG	1 cut(s)	966
PceI	AGGCCT	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	827, 856
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	5 cut(s)	6, 382, 490, 720, 954
PleI	GAGTC	5 cut(s)	463, 865, 907, 907, 1116
PpsI	GAGTC	5 cut(s)	463, 865, 907, 907, 1116
PsiI	TTATAA	1 cut(s)	1137
Psp124BI	GAGCTC	1 cut(s)	1026
Psp6I	CCWGG	2 cut(s)	685, 1043
PspGI	CCWGG	2 cut(s)	685, 1043
PspN4I	GGNNCC	5 cut(s)	271, 303, 391, 507, 639
PspPI	GGNCC	2 cut(s)	390, 418
PstI	CTGCAG	2 cut(s)	410, 720
PstNI	CAGNNNCTG	1 cut(s)	1202
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	2 cut(s)	457, 516
RsaNI	GTAC	2 cut(s)	456, 515
SacI	GAGCTC	1 cut(s)	1026
SaqAI	TTAA	3 cut(s)	362, 612, 1079
SatI	GCNGC	5 cut(s)	5, 381, 489, 719, 953
Sau3AI	GATC	2 cut(s)	348, 939
Sau96I	GGNCC	2 cut(s)	390, 418
SchI	GAGTC	5 cut(s)	463, 865, 907, 908, 1117
ScrFI	CCNGG	2 cut(s)	687, 1045
SduI	GDGCHC	4 cut(s)	272, 289, 508, 1026
SfaNI	GCATC	1 cut(s)	80
SfcI	CTRYAG	2 cut(s)	406, 716
Sfr274I	CTCGAG	1 cut(s)	966
SinI	GGWCC	1 cut(s)	418
SlaI	CTCGAG	1 cut(s)	966
SmlI	CTYRAG	2 cut(s)	450, 966
SmoI	CTYRAG	2 cut(s)	450, 966
Sse9I	AATT	6 cut(s)	107, 210, 274, 519, 608, 626
SseBI	AGGCCT	1 cut(s)	685
SspMI	CTAG	3 cut(s)	180, 698, 875
SstI	GAGCTC	1 cut(s)	1026
StuI	AGGCCT	1 cut(s)	685
StyD4I	CCNGG	2 cut(s)	685, 1043
StyI	CCWWGG	1 cut(s)	761
TaaI	ACNGT	4 cut(s)	39, 284, 422, 588
TaiI	ACGT	3 cut(s)	52, 912, 948
TaqI	TCGA	2 cut(s)	531, 967
TasI	AATT	6 cut(s)	107, 210, 274, 519, 608, 626
TfiI	GAWTC	2 cut(s)	827, 856
Tru1I	TTAA	3 cut(s)	362, 612, 1079
Tru9I	TTAA	3 cut(s)	362, 612, 1079
TscAI	CASTG	3 cut(s)	205, 505, 708
TseFI	GTSAC	6 cut(s)	50, 466, 658, 789, 805, 910
TseI	GCWGC	5 cut(s)	4, 380, 488, 718, 952
Tsp45I	GTSAC	6 cut(s)	50, 466, 658, 789, 805, 910
TspDTI	ATGAA	2 cut(s)	81, 753
TspRI	CASTG	3 cut(s)	205, 505, 708
Van91I	CCANNNNNTGG	1 cut(s)	767
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	2 cut(s)	608, 626
XbaI	TCTAGA	1 cut(s)	874
XceI	RCATGY	3 cut(s)	123, 334, 673
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1025, 1051
XhoI	CTCGAG	1 cut(s)	966
XmiI	GTMKAC	1 cut(s)	1111
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	3 cut(s)	180, 698, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.