Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009398.1

Orthogroup ID

OG0006377

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1750

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009398.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1402 bp

tgcgttctctgcccaatataaagacctccagaactgcaattactaaatctgaagccacctcatctcctaacagtgctaagctggcttatgtgaacaatgcagtattatcacccaatgtaaagtatgctagcttgtctgcgagaaaagcaggagtcagtgattctcctaatagtgctaagagtagaggccttattgatacaactgctcctttcgaatcagttaaagaagctgtttccaaatttggaggaattgttgattggaaagcccatagaatccaaactgtggagagacgcaaacttgtggagcaagaactggagaaagcacaggaggagattccggagtatcagagacgatccgagattgctgaagatgagaaaacaaaagtattgaaggagctggacagcacgaagagacttgtagaagaattgaagcttaacctggagagagcacaaacagaagagagtcaggcaaaacaagactcagaacttgccaaactaagggtggaagagatggagcaaggtattgctgatgaggccagtgttgcagccaaggcacagcttgaggttgccaaggcaaggcatacagctgcagtgacagagctaaaatctgttaaagaggagctggaagcactgcacaaggaatatgcttctttagtgactgagaaagacatggctatcaaaaatgccgaagaggccattgctgcatccaaggaagttgagaaaacagttgaagacctaactattgaactgattgcgacaaaggagtcattggagtctgcacatgctgcccatttggaagcagaggaacaaaggattggagcagtcatggccaaggaacaagattctcatcattgggaaaaggagataaagcaggcagaggaggagcttcagagacttaaccagcaaattctgtcagctaaggatcttaagtccaaactagacacggcctcggccttgcttcttgatttaaaagctgaattagctgcttatatggaatcaagattcaaggaggacagtgatggaggacaatcgaaagatgagcaagaaacaccggagaggaaaactcatactgatatacaagcagcagttgcttcagcaaagaaggagctggaagaagtgaagctcaacatagagaaagcaattgctgaagtaaattgcttaaaggtggctgcctcggcattgaagtctgaacttgaaagtgagaaatcagctcttgccaccattaggcaaagagaaggaatggcatcagtggctgtggcatctctagaagctgaactggacaggactaggtcagaaatagctgtagttcagatgaaggagaaagatgccagagagaagatggtggagctacccaaagagttgcagcaagcagcacaacaggctgaccaggctaaggtactagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016020 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

467

Amino Acids

51.64

Weight (kDa)

5.23

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26570 AT2G26570
fragaria_vesca	FvH4_2g34472 FvH4_2g34472 FvH4_2g34472 FvH4_2g34472 FvH4_2g34472 FvH4_2g34472 FvH4_2g34472
malus_domestica	MD08G1102100.v1.1 MD15G1083600.v1.1
prunus_persica	Prupe.1G436100_v2.0.a1 Prupe.1G436100_v2.0.a1 Prupe.1G436100_v2.0.a1
pyrus_communis	pycom15g07820
rosa_chinensis	RchiOBHm_Chr6g0307881
rosa_laevigata	RLG00000010691
rosa_multiflora	Rmu_sc0009398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160800
rosa_rugosa	Rorug06G0361400 Rorug06G0361400 Rorug06G0361400
rosa_samantha	Rh6AG470400 Rh6BG481400 Rh6CG486700 Rh6DG472900
rosa_wichuraiana	Rw6G041070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	762
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccIII	TCCGGA	1 cut(s)	336
AclWI	GGATC	2 cut(s)	347, 929
AcoI	YGGCCR	1 cut(s)	827
AcsI	RAATTY	2 cut(s)	238, 905
AcuI	CTGAAG	5 cut(s)	71, 386, 871, 1076, 1166
AfaI	GTAC	1 cut(s)	1397
AfiI	CCNNNNNNNGG	5 cut(s)	282, 497, 575, 1223, 1392
AflII	CTTAAG	1 cut(s)	925
AgsI	TTSAA	7 cut(s)	390, 429, 730, 745, 1005, 1182, 1195
AjnI	CCWGG	2 cut(s)	437, 1385
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 797, 829
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	4 cut(s)	282, 342, 405, 885
AlwI	GGATC	2 cut(s)	347, 929
AlwNI	CAGNNNCTG	1 cut(s)	1252
Aor13HI	TCCGGA	1 cut(s)	336
AoxI	GGCC	6 cut(s)	186, 533, 692, 827, 944, 950
ApeKI	GCWGC	9 cut(s)	544, 586, 700, 784, 982, 1081, 1168, 1362, 1369
ApoI	RAATTY	2 cut(s)	238, 905
AsuHPI	GGTGA	1 cut(s)	101
AsuII	TTCGAA	1 cut(s)	212
AsuNHI	GCTAGC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	829
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	9 cut(s)	556, 573, 687, 771, 969, 1093, 1155, 1374, 1381
BccI	CCATC	3 cut(s)	504, 1012, 1332
BceAI	ACGGC	1 cut(s)	959
BciT130I	CCWGG	2 cut(s)	439, 1387
BcoDI	GTCTC	4 cut(s)	282, 342, 405, 885
BfaI	CTAG	5 cut(s)	128, 937, 1264, 1286, 1399
BfmI	CTRYAG	2 cut(s)	587, 1301
BfrI	CTTAAG	1 cut(s)	925
BglI	GCCNNNNNGGC	1 cut(s)	691
BisI	GCNGC	9 cut(s)	545, 587, 701, 785, 983, 1082, 1169, 1363, 1370
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	9 cut(s)	546, 588, 702, 786, 984, 1083, 1170, 1364, 1371
Bme1390I	CCNGG	2 cut(s)	439, 1387
BmrFI	CCNGG	2 cut(s)	439, 1387
BmsI	GCATC	4 cut(s)	712, 1252, 1267, 1314
BmtI	GCTAGC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	737
BplI	GAGNNNNNCTC	2 cut(s)	1047, 1079
BpmI	CTGGAG	3 cut(s)	12, 334, 460
Bpu10I	CCTNAGC	2 cut(s)	917, 1391
Bpu1102I	GCTNAGC	1 cut(s)	77
Bpu14I	TTCGAA	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	845
BsaJI	CCNNGG	6 cut(s)	548, 569, 707, 830, 947, 1172
BsaWI	WCCGGW	2 cut(s)	336, 1050
BsaXI	ACNNNNNCTCC	6 cut(s)	48, 78, 189, 219, 236, 266
Bsc4I	CCNNNNNNNGG	5 cut(s)	282, 497, 575, 1223, 1392
Bse1I	ACTGG	3 cut(s)	317, 536, 1280
Bse3DI	GCAATG	1 cut(s)	695
Bse8I	GATNNNNATC	1 cut(s)	845
BseAI	TCCGGA	1 cut(s)	336
BseBI	CCWGG	2 cut(s)	439, 1387
BseDI	CCNNGG	6 cut(s)	548, 569, 707, 830, 947, 1172
BseGI	GGATG	1 cut(s)	703
BseJI	GATNNNNATC	1 cut(s)	845
BseLI	CCNNNNNNNGG	5 cut(s)	282, 497, 575, 1223, 1392
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	2 cut(s)	494, 650
BseNI	ACTGG	3 cut(s)	317, 536, 1280
BseRI	GAGGAG	4 cut(s)	343, 631, 892, 895
BseXI	GCAGC	9 cut(s)	556, 573, 687, 771, 969, 1093, 1155, 1374, 1381
BsgI	GTGCAG	2 cut(s)	616, 761
BshFI	GGCC	6 cut(s)	188, 535, 694, 829, 946, 952
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	337, 1051
BslI	CCNNNNNNNGG	5 cut(s)	282, 497, 575, 1223, 1392
BsmAI	GTCTC	4 cut(s)	282, 342, 405, 885
BsmBI	CGTCTC	2 cut(s)	282, 342
BsnI	GGCC	6 cut(s)	188, 535, 694, 829, 946, 952
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp13I	TCCGGA	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	352, 921
Bsp1720I	GCTNAGC	1 cut(s)	77
BspANI	GGCC	6 cut(s)	188, 535, 694, 829, 946, 952
BspCNI	CTCAG	2 cut(s)	493, 651
BspEI	TCCGGA	1 cut(s)	336
BspMAI	CTGCAG	1 cut(s)	591
BspOI	GCTAGC	1 cut(s)	131
BspPI	GGATC	2 cut(s)	347, 929
BspT104I	TTCGAA	1 cut(s)	212
BspTI	CTTAAG	1 cut(s)	925
BsrDI	GCAATG	1 cut(s)	695
BsrI	ACTGG	3 cut(s)	317, 536, 1280
BssECI	CCNNGG	6 cut(s)	548, 569, 707, 830, 947, 1172
BssMI	GATC	2 cut(s)	352, 921
BssT1I	CCWWGG	4 cut(s)	548, 569, 707, 830
Bst2UI	CCWGG	2 cut(s)	439, 1387
Bst4CI	ACNGT	4 cut(s)	73, 282, 726, 1015
Bst6I	CTCTTC	4 cut(s)	403, 452, 500, 683
BstAFI	CTTAAG	1 cut(s)	925
BstAPI	GCANNNNNTGC	2 cut(s)	784, 1087
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	83, 129, 872, 1367
BstDEI	CTNAG	7 cut(s)	77, 176, 480, 496, 659, 917, 1391
BstF5I	GGATG	1 cut(s)	703
BstKTI	GATC	2 cut(s)	355, 924
BstMAI	GTCTC	4 cut(s)	282, 342, 405, 885
BstMBI	GATC	2 cut(s)	352, 921
BstNI	CCWGG	2 cut(s)	439, 1387
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	2 cut(s)	437, 1385
BstSFI	CTRYAG	2 cut(s)	587, 1301
BstV1I	GCAGC	9 cut(s)	556, 573, 687, 771, 969, 1093, 1155, 1374, 1381
BstV2I	GAAGAC	1 cut(s)	737
BstX2I	RGATCY	1 cut(s)	921
BstYI	RGATCY	1 cut(s)	921
BsuRI	GGCC	6 cut(s)	188, 535, 694, 829, 946, 952
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	2 cut(s)	596, 628
BtsIMutI	CAGTG	7 cut(s)	78, 162, 543, 596, 628, 1020, 1253
Cac8I	GCNNGC	4 cut(s)	83, 129, 872, 1367
CaiI	CAGNNNCTG	1 cut(s)	1252
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	1396
CviAII	CATG	3 cut(s)	669, 781, 825
CviQI	GTAC	1 cut(s)	1396
DdeI	CTNAG	7 cut(s)	77, 176, 480, 496, 659, 917, 1391
DpnI	GATC	2 cut(s)	354, 923
DpnII	GATC	2 cut(s)	352, 921
DraI	TTTAAA	1 cut(s)	968
DrdI	GACNNNNNNGTC	1 cut(s)	762
DseDI	GACNNNNNNGTC	1 cut(s)	762
EaeI	YGGCCR	1 cut(s)	827
Eam1104I	CTCTTC	4 cut(s)	403, 452, 500, 683
EarI	CTCTTC	4 cut(s)	403, 452, 500, 683
Eco130I	CCWWGG	4 cut(s)	548, 569, 707, 830
Eco147I	AGGCCT	1 cut(s)	188
Eco57I	CTGAAG	5 cut(s)	71, 386, 871, 1076, 1166
EcoRII	CCWGG	2 cut(s)	437, 1385
EcoT14I	CCWWGG	4 cut(s)	548, 569, 707, 830
ErhI	CCWWGG	4 cut(s)	548, 569, 707, 830
Esp3I	CGTCTC	2 cut(s)	282, 342
FaeI	CATG	3 cut(s)	672, 784, 828
FatI	CATG	3 cut(s)	668, 780, 824
Fnu4HI	GCNGC	9 cut(s)	545, 587, 701, 785, 983, 1082, 1169, 1363, 1370
FokI	GGATG	1 cut(s)	690
Fsp4HI	GCNGC	9 cut(s)	545, 587, 701, 785, 983, 1082, 1169, 1363, 1370
FspBI	CTAG	5 cut(s)	128, 937, 1264, 1286, 1399
GluI	GCNGC	9 cut(s)	545, 587, 701, 785, 983, 1082, 1169, 1363, 1370
GsuI	CTGGAG	3 cut(s)	12, 334, 460
HaeIII	GGCC	6 cut(s)	188, 535, 694, 829, 946, 952
HapII	CCGG	2 cut(s)	337, 1051
HgaI	GACGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	672, 784, 828
HindIII	AAGCTT	1 cut(s)	430
HpaII	CCGG	2 cut(s)	337, 1051
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	8 cut(s)	51, 347, 357, 483, 890, 1188, 1293, 1310
Hpy188III	TCNNGA	5 cut(s)	29, 337, 961, 998, 1264
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	4 cut(s)	384, 1095, 1228, 1308
HpyCH4III	ACNGT	4 cut(s)	73, 282, 726, 1015
HpyCH4V	TGCA	8 cut(s)	37, 100, 544, 589, 633, 703, 778, 1362
HpyF3I	CTNAG	7 cut(s)	77, 176, 480, 496, 659, 917, 1391
Hsp92II	CATG	3 cut(s)	672, 784, 828
Kpn2I	TCCGGA	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	352, 921
LmnI	GCTCC	9 cut(s)	210, 303, 393, 513, 618, 817, 882, 1104, 1344
Lsp1109I	GCAGC	9 cut(s)	556, 573, 687, 771, 969, 1093, 1155, 1374, 1381
LweI	GCATC	4 cut(s)	712, 1252, 1267, 1314
MaeI	CTAG	5 cut(s)	128, 937, 1264, 1286, 1399
MaeIII	GTNAC	2 cut(s)	591, 654
MalI	GATC	2 cut(s)	354, 923
MboI	GATC	2 cut(s)	352, 921
MboII	GAAGA	9 cut(s)	379, 420, 433, 469, 517, 700, 742, 1123, 1347
MfeI	CAATTG	1 cut(s)	1139
MflI	RGATCY	1 cut(s)	921
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	829
MluCI	AATT	8 cut(s)	38, 238, 248, 424, 905, 976, 1139, 1152
MluNI	TGGCCA	1 cut(s)	829
MlyI	GAGTC	5 cut(s)	161, 471, 472, 772, 781
Mox20I	TGGCCA	1 cut(s)	829
MroI	TCCGGA	1 cut(s)	336
MscI	TGGCCA	1 cut(s)	829
MseI	TTAA	7 cut(s)	221, 434, 611, 896, 926, 967, 1159
Msp20I	TGGCCA	1 cut(s)	829
MspA1I	CMGCKG	1 cut(s)	586
MspCI	CTTAAG	1 cut(s)	925
MspI	CCGG	2 cut(s)	337, 1051
MspR9I	CCNGG	2 cut(s)	439, 1387
MunI	CAATTG	1 cut(s)	1139
MvaI	CCWGG	2 cut(s)	439, 1387
NdeII	GATC	2 cut(s)	352, 921
NheI	GCTAGC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	672, 784, 828
NmeAIII	GCCGAG	2 cut(s)	928, 1153
NmuCI	GTSAC	2 cut(s)	591, 654
NspI	RCATGY	1 cut(s)	784
NspV	TTCGAA	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	188
PfeI	GAWTC	7 cut(s)	160, 214, 272, 333, 841, 994, 1001
PflFI	GACNNNGTC	1 cut(s)	1287
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	9 cut(s)	546, 588, 702, 786, 984, 1083, 1170, 1364, 1371
PleI	GAGTC	5 cut(s)	160, 470, 472, 771, 780
PpsI	GAGTC	5 cut(s)	160, 470, 472, 771, 780
Psp6I	CCWGG	2 cut(s)	437, 1385
PspGI	CCWGG	2 cut(s)	437, 1385
PsrI	GAACNNNNNNTAC	2 cut(s)	24, 56
PstI	CTGCAG	1 cut(s)	591
PstNI	CAGNNNCTG	1 cut(s)	1252
PsuI	RGATCY	1 cut(s)	921
PsyI	GACNNNGTC	1 cut(s)	1287
PvuII	CAGCTG	1 cut(s)	586
RsaI	GTAC	1 cut(s)	1397
RsaNI	GTAC	1 cut(s)	1396
SaqAI	TTAA	7 cut(s)	221, 434, 611, 896, 926, 967, 1159
SatI	GCNGC	9 cut(s)	545, 587, 701, 785, 983, 1082, 1169, 1363, 1370
Sau3AI	GATC	2 cut(s)	352, 921
SchI	GAGTC	5 cut(s)	161, 471, 472, 772, 781
ScrFI	CCNGG	2 cut(s)	439, 1387
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	4 cut(s)	712, 1252, 1267, 1314
SfcI	CTRYAG	2 cut(s)	587, 1301
SfuI	TTCGAA	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	559, 925
SmoI	CTYRAG	2 cut(s)	559, 925
Sse9I	AATT	8 cut(s)	38, 238, 248, 424, 905, 976, 1139, 1152
SseBI	AGGCCT	1 cut(s)	188
SspMI	CTAG	5 cut(s)	128, 937, 1264, 1286, 1399
StuI	AGGCCT	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	437, 1385
StyI	CCWWGG	4 cut(s)	548, 569, 707, 830
TaaI	ACNGT	4 cut(s)	73, 282, 726, 1015
TaqI	TCGA	2 cut(s)	212, 1030
TasI	AATT	8 cut(s)	38, 238, 248, 424, 905, 976, 1139, 1152
TfiI	GAWTC	7 cut(s)	160, 214, 272, 333, 841, 994, 1001
Tru1I	TTAA	7 cut(s)	221, 434, 611, 896, 926, 967, 1159
Tru9I	TTAA	7 cut(s)	221, 434, 611, 896, 926, 967, 1159
TscAI	CASTG	7 cut(s)	78, 162, 543, 596, 635, 1020, 1253
TseFI	GTSAC	2 cut(s)	591, 654
TseI	GCWGC	9 cut(s)	544, 586, 700, 784, 982, 1081, 1168, 1362, 1369
Tsp45I	GTSAC	2 cut(s)	591, 654
TspDTI	ATGAA	1 cut(s)	1327
TspRI	CASTG	7 cut(s)	78, 162, 543, 596, 635, 1020, 1253
Tth111I	GACNNNGTC	1 cut(s)	1287
Van91I	CCANNNNNTGG	1 cut(s)	282
Vha464I	CTTAAG	1 cut(s)	925
XapI	RAATTY	2 cut(s)	238, 905
XbaI	TCTAGA	1 cut(s)	1263
XceI	RCATGY	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	2 cut(s)	498, 1335
XspI	CTAG	5 cut(s)	128, 937, 1264, 1286, 1399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.