Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006377

Physical Location & Seq

Genomic Coordinates Forward (+)

68701396 .. 68704713

Gene Structure 3318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG481400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3051 bp

ATGGAGGATGTCAAAGTTGCAGAAAAAATGCTTCCTCCAGAATCCTCTTCATCCAACCACCATGATGATCACTCTGGTAGGGATGCTCCTACAAACCCAGAAAAGCATGACAGAGTTGAAAGTGATAGTCATTTGTTAAAGAACGAGAATTCTAAACCAGAGGCTGCACAAAGTGCTTCTGATGTTCCATCTCTGGCACAAAATCAACTACATCCAACAGATAATCCGTCTTCTACCTCATTAACAATAGAAAATGGTAAATTACCAACTGCAGAACAGACTTCAAAGATCCCATCTCTAGAGCAAAACCAGCCTCTGCCAACAGATACCACAGCCTCACAGTCGACAGTTACAGTTACTCAGGATACTCTGAAGAAAGATTCTGGTCCTAAAGATGTTGACCCATTATTACAACAAAACCAGCCTCTGCCAACAGATACCACAGCCTCACAGTCGACAGTTACAGTTACTCAGGATACTCTGAAGAAAGATTCTGGTCCTAAAGATGTCGACCCATTATTACAACAAAACCAGCCTCTGCCAACAGATACCACAGCCTCACAGTCGACAGTTACAGTTACTCAGGAAACTCTGAAGAAAGATTCTGGTCCTAAAGATGTCGACCCATTATTACAACAAAACCAGCCTCTTCCAACAGATACCACAACCTCACAGTCGACAGTTACAGTTACTCAGGAAACTCTGAAGAAAGATTCTGGTCCTAAAGATGTTGACCCATTATTACAACAAAATCAACATCTTCCAACAGATACTCCAGCCTCAACCTCAACTATTGCAGCTGACAAAACGGAGACAAATATACTGAATACTGTCGCAGATTCTGTTCCTAAGAATGTTGACCTTGTAGTGCCATCCACCGTGCGTTCTCTGCCCAATATAAAGACCTCCAGAACTGCAATTACTAAATCTGAAGCCACCTCTTCTCCTAACAGTGCTAAGCTGGCTTATGTGAACAATGCAGTATTATCACCCAATGTAAAGTATGCTAGCTTGTCTGCGAGAAAAGCAGGAGTCAGTGATTCTCCTAATAGTGCTAAGAGCAGAGGCCTTATTGATACAACTGCTCCTTTCGAATCAGTTAAAGAAGCTGTTTCCAAATTTGGAGGAATTGTTGATTGGAAAGCCCATAGAATCCAAACTGTGGAGAGACGCAAACTTGTGGAGCAAGAACTGGAGAAAGCACAGGAGGAGATTCCGGAGTATCAGAGACGATCCGAGATTGCTGAAGATGAGAAAACAAAAGTATTGAAGGAGCTGGACAGCACGAAGAGACTTGTAGAAGAATTGAAGCTTAACCTGGAAAGAGCACAAACAGAAGAGAGTCAGGCAAAACAAGACTCGGAACTTGCCAAACTAAGGGTGGAAGAGATGGAGCAAGGTATTGCTGATGAGGCCAGTGTTGCAGCCAAGGCACAGCTTGAGGTTGCCAAGGCGAGGCATACAGCTGCAGTGACAGAGCTAAAATCTGTTAAAGAGGAGCTGGAAGCACTGCACAAGGAATATGCTTCTTTAGTGACTGAGAAAGACTTGGCTATCAAAAATGCCGAAGAGGCCATTGCTGCATCCAAGGAAGTTGAGAAAACAGTTGAAGACCTAACTATTGAACTGATTGCCACAAAGGAGTCATTGGAGTCTGCACATGCTGCCCATTTGGAAGCAGAGGAACAAAGGATTGGAGCAGTCATGGCCAAGGAACAAGATTCTCATCATTGGGAAAAGGAGATAAAGCAGGCAGAGGAGGAGCTTCAGAGACTTAACCAGCAAATTCTGTCAGCTAAGGATCTTAAATCCAAACTGGACACAGCCTCGGCCTTGCTTCTTGATTTAAAAGCTGAATTAGCTGCTTATATGGAATCAAGATTCAAGGAGGACAGTGATGGAGGACAATCGAAAGATGAGCAAGAAACACCGGAGAGGAAAACTCATACTGATATACAAGCAGCAGTTGCTTCAGCAAAGAAGGAGCTGGAGGAAGTGAAGCTCAACATAGAGAAAGCAATTGCTGAAGTAAATTGCTTAAAGGTGGCTGCCTCGGCATTGAATTCTGAACTTGAAAGTGAGAAATCAGCTCGTGCCACCATTAGGCAAAGAGAAGGAATGGCATCAGTGGCTGTGGCATCTCTAGAAGCTGAACTGGACAGGACTAGGTCAGAAATAGCTGTAGTTCAGATGAAGGAGAAAGATGCCAGAGAGAAGATGGTGGAGCTACCCAAAGAGTTGCAGCAATCAGCACAACAGGCTGACCAGGCAAAGGTACTAGCCAAAATGGCTGCTGAAGATCTGCGTAAGGCAAAAGAAGAAGCAGATCAAGCAAAGGCTGGAGCAAGTACTATGGAGAGTAGATTATTAGCAGCACAAAAGGAAATAGAGGCTGCAAGGGCTTCTGAAAGGTTAGCGTTAGCAGCAATCAAAGCATTGCAGGAGAGTGAGCAAGCCCGATCCACCCCCGCTGATGCTGATTCACCGCCTGGAGTAACACTCTCTATAGGGGAGTATTATGAGCTCAGCAAACGTGCCCATGAGGCAGAGGAGCAGGCAAACACGAGAGTTGCTGCTGCAAGTTCCAAAATTGAGGCAGCCAAGGAGTCTGAGCTGAGAAGCTCGGAGAAGTTGGAAGAAGTGAGTAGGGAAATGGCTTCGAGAAAAGAAGCACTCAGGATGGCAATGGAGAAGGCTGAGAAGGCCAAGGAAGGGAAATTGGGTGTTGAACAGGAGCTGAGAAAGTGGAGAGCCGAACACGAGCAACGACGAAAGCTTGGTGAACCTGGTCAGGCAGCCGTAAACCCCACTAGAAGCCCAAGGGGTAGTTTTGAGGGAGTGAAAGATTCTAAGGGCTTTGACCAGGCACCTGTCTCTGCAGTAGGTGACCCTTATGGTTCAAGCCCCAACCATGCATCAGGAAATGTCACTGGAAGTGAGCCATCCCCCCAAGAAGTAAAGGGTGGAAAGAAGAAGAAGAAGTCATTTTTCCCACGGATTTTTATGTTTTTGGCCAGAAGAAAGCATGCGAAAAATCAAGCTGCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006996 GO:0008150 GO:0009657 GO:0009658 GO:0009902 GO:0009903 GO:0009904 GO:0009987 GO:0016020 GO:0016043 GO:0019750 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WEMBL

Protein Analysis

1016

Amino Acids

110.92

Weight (kDa)

5.38

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WEMBL	PF05701	355 - 923	8.1e-258	Weak chloroplast movement under blue light

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26570 AT2G26570
fragaria_vesca	FvH4_2g34472 FvH4_2g34472 FvH4_2g34472 FvH4_2g34472 FvH4_2g34472 FvH4_2g34472 FvH4_2g34472
malus_domestica	MD08G1102100.v1.1 MD15G1083600.v1.1
prunus_persica	Prupe.1G436100_v2.0.a1 Prupe.1G436100_v2.0.a1 Prupe.1G436100_v2.0.a1
pyrus_communis	pycom15g07820
rosa_chinensis	RchiOBHm_Chr6g0307881
rosa_laevigata	RLG00000010691
rosa_multiflora	Rmu_sc0009398.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160800
rosa_rugosa	Rorug06G0361400 Rorug06G0361400 Rorug06G0361400
rosa_samantha	Rh6AG470400 Rh6BG481400 Rh6CG486700 Rh6DG472900
rosa_wichuraiana	Rw6G041070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2866
AccB7I	CCANNNNNTGG	1 cut(s)	1162
AccI	GTMKAC	6 cut(s)	344, 455, 510, 566, 621, 677
AccIII	TCCGGA	1 cut(s)	1216
AciI	CCGC	2 cut(s)	2469, 2486
AclWI	GGATC	4 cut(s)	283, 1227, 1809, 2454
AcoI	YGGCCR	2 cut(s)	1707, 3012
AcsI	RAATTY	4 cut(s)	148, 1118, 1785, 2062
AdeI	CACNNNGTG	1 cut(s)	173
AfaI	GTAC	2 cut(s)	2277, 2350
AfiI	CCNNNNNNNGG	6 cut(s)	1162, 1377, 1455, 2103, 2272, 2712
AjnI	CCWGG	5 cut(s)	1317, 2265, 2488, 2785, 2862
AjuI	GAANNNNNNNTTGG	4 cut(s)	1120, 1152, 1677, 1709
Alw21I	GWGCWC	2 cut(s)	1330, 2526
Alw26I	GTCTC	6 cut(s)	806, 1162, 1222, 1285, 1765, 2878
AlwI	GGATC	4 cut(s)	283, 1227, 1809, 2454
AlwNI	CAGNNNCTG	7 cut(s)	164, 316, 427, 538, 842, 2132, 2737
Aor13HI	TCCGGA	1 cut(s)	1216
AoxI	GGCC	7 cut(s)	1066, 1413, 1572, 1707, 1830, 2703, 3012
ApoI	RAATTY	4 cut(s)	148, 1118, 1785, 2062
AspS9I	GGNCC	4 cut(s)	386, 497, 608, 719
AsuHPI	GGTGA	4 cut(s)	981, 2475, 2792, 2897
AsuII	TTCGAA	1 cut(s)	1092
AsuNHI	GCTAGC	1 cut(s)	1007
AvaII	GGWCC	4 cut(s)	386, 497, 608, 719
BaeGI	GKGCMC	1 cut(s)	2539
BalI	TGGCCA	2 cut(s)	1709, 3014
BanI	GGYRCC	1 cut(s)	2866
BanII	GRGCYC	1 cut(s)	2526
BauI	CACGAG	3 cut(s)	2091, 2563, 2759
BbsI	GAAGAC	2 cut(s)	222, 1617
Bbv12I	GWGCWC	2 cut(s)	1330, 2526
BccI	CCATC	8 cut(s)	196, 301, 880, 1384, 1892, 2212, 2674, 2950
BceAI	ACGGC	1 cut(s)	2783
BciT130I	CCWGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
BciVI	GTATCC	2 cut(s)	358, 469
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	6 cut(s)	806, 1162, 1222, 1285, 1765, 2878
BfaI	CTAG	6 cut(s)	299, 1008, 2144, 2166, 2279, 2811
BfmI	CTRYAG	5 cut(s)	270, 1467, 2181, 2505, 2877
BfuI	GTATCC	2 cut(s)	358, 469
BglI	GCCNNNNNGGC	3 cut(s)	1571, 2288, 2543
BglII	AGATCT	1 cut(s)	2299
BlpI	GCTNAGC	2 cut(s)	957, 2525
BmcAI	AGTACT	1 cut(s)	2350
Bme1390I	CCNGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
Bme18I	GGWCC	4 cut(s)	386, 497, 608, 719
BmgT120I	GGNCC	4 cut(s)	386, 497, 608, 719
BmiI	GGNNCC	1 cut(s)	2868
BmrFI	CCNGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
BmsI	GCATC	7 cut(s)	73, 1592, 2132, 2147, 2194, 2464, 2924
BmtI	GCTAGC	1 cut(s)	1011
BpiI	GAAGAC	2 cut(s)	222, 1617
BplI	GAGNNNNNCTC	4 cut(s)	1927, 1959, 2484, 2516
BpmI	CTGGAG	7 cut(s)	21, 759, 892, 1214, 2009, 2361, 2511
Bpu10I	CCTNAGC	1 cut(s)	1797
Bpu1102I	GCTNAGC	2 cut(s)	957, 2525
Bpu14I	TTCGAA	1 cut(s)	1092
BpuEI	CTTGAG	1 cut(s)	1460
BsaBI	GATNNNNATC	1 cut(s)	1725
BsaWI	WCCGGW	2 cut(s)	1216, 1930
BsaXI	ACNNNNNCTCC	8 cut(s)	757, 787, 928, 958, 1069, 1099, 1116, 1146
Bsc4I	CCNNNNNNNGG	6 cut(s)	1162, 1377, 1455, 2103, 2272, 2712
Bse1I	ACTGG	5 cut(s)	1197, 1416, 1821, 2160, 2935
Bse3DI	GCAATG	3 cut(s)	1575, 2435, 2691
Bse8I	GATNNNNATC	1 cut(s)	1725
BseAI	TCCGGA	1 cut(s)	1216
BseBI	CCWGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
BseGI	GGATG	8 cut(s)	13, 50, 88, 211, 872, 1583, 2685, 2942
BseJI	GATNNNNATC	1 cut(s)	1725
BseLI	CCNNNNNNNGG	6 cut(s)	1162, 1377, 1455, 2103, 2272, 2712
BseMI	GCAATG	3 cut(s)	1575, 2435, 2691
BseNI	ACTGG	5 cut(s)	1197, 1416, 1821, 2160, 2935
BseRI	GAGGAG	5 cut(s)	1223, 1511, 1772, 1775, 2564
BseSI	GKGCMC	1 cut(s)	2539
BsgI	GTGCAG	4 cut(s)	150, 1496, 1641, 3027
BshFI	GGCC	7 cut(s)	1068, 1415, 1574, 1709, 1832, 2705, 3014
BshNI	GGYRCC	1 cut(s)	2866
BsiHKAI	GWGCWC	2 cut(s)	1330, 2526
BsiSI	CCGG	2 cut(s)	1217, 1931
BslI	CCNNNNNNNGG	6 cut(s)	1162, 1377, 1455, 2103, 2272, 2712
BsmAI	GTCTC	6 cut(s)	806, 1162, 1222, 1285, 1765, 2878
BsmBI	CGTCTC	2 cut(s)	1162, 1222
BsnI	GGCC	7 cut(s)	1068, 1415, 1574, 1709, 1832, 2705, 3014
Bsp119I	TTCGAA	1 cut(s)	1092
Bsp1286I	GDGCHC	3 cut(s)	1330, 2526, 2539
Bsp13I	TCCGGA	1 cut(s)	1216
Bsp143I	GATC	7 cut(s)	67, 288, 1232, 1801, 2299, 2326, 2459
Bsp1720I	GCTNAGC	2 cut(s)	957, 2525
BspACI	CCGC	2 cut(s)	2469, 2486
BspANI	GGCC	7 cut(s)	1068, 1415, 1574, 1709, 1832, 2705, 3014
BspEI	TCCGGA	1 cut(s)	1216
BspLI	GGNNCC	1 cut(s)	2868
BspMAI	CTGCAG	3 cut(s)	274, 1471, 2881
BspOI	GCTAGC	1 cut(s)	1011
BspPI	GGATC	4 cut(s)	283, 1227, 1809, 2454
BspT104I	TTCGAA	1 cut(s)	1092
BspT107I	GGYRCC	1 cut(s)	2866
BsrDI	GCAATG	3 cut(s)	1575, 2435, 2691
BsrI	ACTGG	5 cut(s)	1197, 1416, 1821, 2160, 2935
BssMI	GATC	7 cut(s)	67, 288, 1232, 1801, 2299, 2326, 2459
BssSI	CACGAG	3 cut(s)	2091, 2563, 2759
BssT1I	CCWWGG	7 cut(s)	1428, 1449, 1587, 1710, 2601, 2706, 2819
Bst2BI	CACGAG	3 cut(s)	2091, 2563, 2759
Bst2UI	CCWGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
Bst6I	CTCTTC	7 cut(s)	52, 654, 946, 1283, 1332, 1380, 1563
BstAPI	GCANNNNNTGC	3 cut(s)	173, 1664, 1967
BstBI	TTCGAA	1 cut(s)	1092
BstC8I	GCNNGC	6 cut(s)	963, 1009, 1752, 2454, 2556, 3027
BstDSI	CCRYGG	1 cut(s)	2993
BstEII	GGTNACC	1 cut(s)	2885
BstF5I	GGATG	8 cut(s)	13, 50, 88, 211, 872, 1583, 2685, 2942
BstKTI	GATC	7 cut(s)	70, 291, 1235, 1804, 2302, 2329, 2462
BstMAI	GTCTC	6 cut(s)	806, 1162, 1222, 1285, 1765, 2878
BstMBI	GATC	7 cut(s)	67, 288, 1232, 1801, 2299, 2326, 2459
BstNI	CCWGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
BstNSI	RCATGY	2 cut(s)	1664, 3029
BstPI	GGTNACC	1 cut(s)	2885
BstSCI	CCNGG	5 cut(s)	1317, 2265, 2488, 2785, 2862
BstSFI	CTRYAG	5 cut(s)	270, 1467, 2181, 2505, 2877
BstSLI	GKGCMC	1 cut(s)	2539
BstV2I	GAAGAC	2 cut(s)	222, 1617
BstX2I	RGATCY	3 cut(s)	288, 1801, 2299
BstYI	RGATCY	3 cut(s)	288, 1801, 2299
BsuI	GTATCC	2 cut(s)	358, 469
BsuRI	GGCC	7 cut(s)	1068, 1415, 1574, 1709, 1832, 2705, 3014
BtgI	CCRYGG	1 cut(s)	2993
BtsCI	GGATG	8 cut(s)	13, 50, 88, 211, 872, 1583, 2685, 2942
BtsI	GCAGTG	2 cut(s)	1476, 1508
BtsIMutI	CAGTG	8 cut(s)	958, 1042, 1423, 1476, 1508, 1900, 2133, 2928
Cac8I	GCNNGC	6 cut(s)	963, 1009, 1752, 2454, 2556, 3027
CaiI	CAGNNNCTG	7 cut(s)	164, 316, 427, 538, 842, 2132, 2737
Cfr13I	GGNCC	4 cut(s)	386, 497, 608, 719
CseI	GACGC	1 cut(s)	1179
CsiI	ACCWGGT	1 cut(s)	2785
Csp6I	GTAC	2 cut(s)	2276, 2349
CviAII	CATG	7 cut(s)	62, 107, 1661, 1705, 2540, 2912, 3026
CviQI	GTAC	2 cut(s)	2276, 2349
DpnI	GATC	7 cut(s)	69, 290, 1234, 1803, 2301, 2328, 2461
DpnII	GATC	7 cut(s)	67, 288, 1232, 1801, 2299, 2326, 2459
DraI	TTTAAA	1 cut(s)	1848
DraIII	CACNNNGTG	1 cut(s)	173
EaeI	YGGCCR	2 cut(s)	1707, 3012
Eam1104I	CTCTTC	7 cut(s)	52, 654, 946, 1283, 1332, 1380, 1563
EarI	CTCTTC	7 cut(s)	52, 654, 946, 1283, 1332, 1380, 1563
Ecl136II	GAGCTC	1 cut(s)	2524
Eco130I	CCWWGG	7 cut(s)	1428, 1449, 1587, 1710, 2601, 2706, 2819
Eco147I	AGGCCT	1 cut(s)	1068
Eco24I	GRGCYC	1 cut(s)	2526
Eco47I	GGWCC	4 cut(s)	386, 497, 608, 719
Eco53kI	GAGCTC	1 cut(s)	2524
Eco91I	GGTNACC	1 cut(s)	2885
EcoICRI	GAGCTC	1 cut(s)	2524
EcoO65I	GGTNACC	1 cut(s)	2885
EcoRI	GAATTC	2 cut(s)	148, 2062
EcoRII	CCWGG	5 cut(s)	1317, 2265, 2488, 2785, 2862
EcoT14I	CCWWGG	7 cut(s)	1428, 1449, 1587, 1710, 2601, 2706, 2819
EcoT22I	ATGCAT	1 cut(s)	2917
EcoT38I	GRGCYC	1 cut(s)	2526
ErhI	CCWWGG	7 cut(s)	1428, 1449, 1587, 1710, 2601, 2706, 2819
Esp3I	CGTCTC	2 cut(s)	1162, 1222
FaeI	CATG	7 cut(s)	65, 110, 1664, 1708, 2543, 2915, 3029
FatI	CATG	7 cut(s)	61, 106, 1660, 1704, 2539, 2911, 3025
FauI	CCCGC	1 cut(s)	2476
FbaI	TGATCA	1 cut(s)	67
FblI	GTMKAC	6 cut(s)	344, 455, 510, 566, 621, 677
FokI	GGATG	8 cut(s)	20, 37, 95, 198, 859, 1570, 2692, 2929
FriOI	GRGCYC	1 cut(s)	2526
FspBI	CTAG	6 cut(s)	299, 1008, 2144, 2166, 2279, 2811
GsuI	CTGGAG	7 cut(s)	21, 759, 892, 1214, 2009, 2361, 2511
HaeIII	GGCC	7 cut(s)	1068, 1415, 1574, 1709, 1832, 2705, 3014
HapII	CCGG	2 cut(s)	1217, 1931
HgaI	GACGC	1 cut(s)	1179
Hin1II	CATG	7 cut(s)	65, 110, 1664, 1708, 2543, 2915, 3029
HincII	GTYRAC	9 cut(s)	345, 400, 456, 511, 567, 622, 678, 733, 859
HindII	GTYRAC	9 cut(s)	345, 400, 456, 511, 567, 622, 678, 733, 859
HindIII	AAGCTT	2 cut(s)	1310, 2774
HpaII	CCGG	2 cut(s)	1217, 1931
HphI	GGTGA	4 cut(s)	981, 2475, 2792, 2897
Hpy99I	CGWCG	1 cut(s)	2772
HpyAV	CCTTC	7 cut(s)	1264, 1975, 2108, 2188, 2686, 2695, 2705
HpyCH4IV	ACGT	2 cut(s)	2533, 3046
HpySE526I	ACGT	2 cut(s)	2533, 3046
Hsp92II	CATG	7 cut(s)	65, 110, 1664, 1708, 2543, 2915, 3029
Kpn2I	TCCGGA	1 cut(s)	1216
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	7 cut(s)	67, 288, 1232, 1801, 2299, 2326, 2459
LweI	GCATC	7 cut(s)	73, 1592, 2132, 2147, 2194, 2464, 2924
MabI	ACCWGGT	1 cut(s)	2785
MaeI	CTAG	6 cut(s)	299, 1008, 2144, 2166, 2279, 2811
MaeII	ACGT	2 cut(s)	2533, 3046
MalI	GATC	7 cut(s)	69, 290, 1234, 1803, 2301, 2328, 2461
MboI	GATC	7 cut(s)	67, 288, 1232, 1801, 2299, 2326, 2459
MfeI	CAATTG	1 cut(s)	2019
MflI	RGATCY	3 cut(s)	288, 1801, 2299
MhlI	GDGCHC	3 cut(s)	1330, 2526, 2539
MlsI	TGGCCA	2 cut(s)	1709, 3014
MluNI	TGGCCA	2 cut(s)	1709, 3014
MlyI	GAGTC	6 cut(s)	1041, 1351, 1352, 1652, 1661, 2615
MmeI	TCCRAC	5 cut(s)	78, 239, 677, 788, 2613
Mox20I	TGGCCA	2 cut(s)	1709, 3014
Mph1103I	ATGCAT	1 cut(s)	2917
MroI	TCCGGA	1 cut(s)	1216
MscI	TGGCCA	2 cut(s)	1709, 3014
MseI	TTAA	9 cut(s)	137, 242, 1101, 1314, 1491, 1776, 1806, 1847, 2039
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	2 cut(s)	1709, 3014
MspA1I	CMGCKG	3 cut(s)	800, 1466, 2471
MspI	CCGG	2 cut(s)	1217, 1931
MspR9I	CCNGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
MunI	CAATTG	1 cut(s)	2019
MvaI	CCWGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
NdeII	GATC	7 cut(s)	67, 288, 1232, 1801, 2299, 2326, 2459
NheI	GCTAGC	1 cut(s)	1007
NlaIII	CATG	7 cut(s)	65, 110, 1664, 1708, 2543, 2915, 3029
NlaIV	GGNNCC	1 cut(s)	2868
NmeAIII	GCCGAG	2 cut(s)	1808, 2033
NmuCI	GTSAC	4 cut(s)	1471, 1534, 2885, 2926
NsiI	ATGCAT	1 cut(s)	2917
NspI	RCATGY	2 cut(s)	1664, 3029
NspV	TTCGAA	1 cut(s)	1092
PaeI	GCATGC	1 cut(s)	3029
PceI	AGGCCT	1 cut(s)	1068
PflFI	GACNNNGTC	1 cut(s)	2167
PflMI	CCANNNNNTGG	1 cut(s)	1162
PleI	GAGTC	6 cut(s)	1040, 1350, 1352, 1651, 1660, 2614
PpsI	GAGTC	6 cut(s)	1040, 1350, 1352, 1651, 1660, 2614
Psp124BI	GAGCTC	1 cut(s)	2526
Psp6I	CCWGG	5 cut(s)	1317, 2265, 2488, 2785, 2862
PspEI	GGTNACC	1 cut(s)	2885
PspGI	CCWGG	5 cut(s)	1317, 2265, 2488, 2785, 2862
PspN4I	GGNNCC	1 cut(s)	2868
PspPI	GGNCC	4 cut(s)	386, 497, 608, 719
PsrI	GAACNNNNNNTAC	2 cut(s)	904, 936
PstI	CTGCAG	3 cut(s)	274, 1471, 2881
PstNI	CAGNNNCTG	7 cut(s)	164, 316, 427, 538, 842, 2132, 2737
PsuI	RGATCY	3 cut(s)	288, 1801, 2299
PsyI	GACNNNGTC	1 cut(s)	2167
PvuII	CAGCTG	2 cut(s)	800, 1466
RsaI	GTAC	2 cut(s)	2277, 2350
RsaNI	GTAC	2 cut(s)	2276, 2349
RseI	CAYNNNNRTG	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	2526
SalI	GTCGAC	6 cut(s)	343, 454, 509, 565, 620, 676
SaqAI	TTAA	9 cut(s)	137, 242, 1101, 1314, 1491, 1776, 1806, 1847, 2039
Sau3AI	GATC	7 cut(s)	67, 288, 1232, 1801, 2299, 2326, 2459
Sau96I	GGNCC	4 cut(s)	386, 497, 608, 719
ScaI	AGTACT	1 cut(s)	2350
SchI	GAGTC	6 cut(s)	1041, 1351, 1352, 1652, 1661, 2615
ScrFI	CCNGG	5 cut(s)	1319, 2267, 2490, 2787, 2864
SduI	GDGCHC	3 cut(s)	1330, 2526, 2539
SexAI	ACCWGGT	1 cut(s)	2785
SfaNI	GCATC	7 cut(s)	73, 1592, 2132, 2147, 2194, 2464, 2924
SfcI	CTRYAG	5 cut(s)	270, 1467, 2181, 2505, 2877
SfuI	TTCGAA	1 cut(s)	1092
SinI	GGWCC	4 cut(s)	386, 497, 608, 719
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	1439
SmoI	CTYRAG	1 cut(s)	1439
SphI	GCATGC	1 cut(s)	3029
SseBI	AGGCCT	1 cut(s)	1068
SsiI	CCGC	2 cut(s)	2469, 2486
SspMI	CTAG	6 cut(s)	299, 1008, 2144, 2166, 2279, 2811
SstI	GAGCTC	1 cut(s)	2526
StuI	AGGCCT	1 cut(s)	1068
StyD4I	CCNGG	5 cut(s)	1317, 2265, 2488, 2785, 2862
StyI	CCWWGG	7 cut(s)	1428, 1449, 1587, 1710, 2601, 2706, 2819
TaiI	ACGT	2 cut(s)	2536, 3049
TaqI	TCGA	9 cut(s)	344, 455, 510, 566, 621, 677, 1092, 1910, 2660
TatI	WGTACW	1 cut(s)	2348
Tru1I	TTAA	9 cut(s)	137, 242, 1101, 1314, 1491, 1776, 1806, 1847, 2039
Tru9I	TTAA	9 cut(s)	137, 242, 1101, 1314, 1491, 1776, 1806, 1847, 2039
TscAI	CASTG	8 cut(s)	958, 1042, 1423, 1476, 1515, 1900, 2133, 2935
TseFI	GTSAC	4 cut(s)	1471, 1534, 2885, 2926
Tsp45I	GTSAC	4 cut(s)	1471, 1534, 2885, 2926
TspDTI	ATGAA	2 cut(s)	39, 2207
TspGWI	ACGGA	3 cut(s)	216, 824, 3010
TspRI	CASTG	8 cut(s)	958, 1042, 1423, 1476, 1515, 1900, 2133, 2935
Tth111I	GACNNNGTC	1 cut(s)	2167
Van91I	CCANNNNNTGG	1 cut(s)	1162
VpaK11BI	GGWCC	4 cut(s)	386, 497, 608, 719
XapI	RAATTY	4 cut(s)	148, 1118, 1785, 2062
XbaI	TCTAGA	2 cut(s)	298, 2143
XceI	RCATGY	2 cut(s)	1664, 3029
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1378, 2215
XmiI	GTMKAC	6 cut(s)	344, 455, 510, 566, 621, 677
XspI	CTAG	6 cut(s)	299, 1008, 2144, 2166, 2279, 2811
ZrmI	AGTACT	1 cut(s)	2350
Zsp2I	ATGCAT	1 cut(s)	2917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.