Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009573.1

Orthogroup ID

OG0015943

Physical Location & Seq

Genomic Coordinates Forward (+)

19246 .. 19572

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009573.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggtgtctctgcgatcttgcttcgttctactacttctttgcctttcctatctcagcgcatctgcctcaccaccatcatcatcaacatgcaatggttccatagcagagtgtgaaacagaaagcgagatgctgatggattccgaaataagcagaaggtttctcgcacagaagtacatctcacctggagctttgaagaaagaccaaccagtctgcaacggcggtgctaaaggcgaagcttatagtaaaacaggaggttgtcttcctcctccggctaacccttatagcagaggctgctctaaatactatcggtgtagatccgactcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

108

Amino Acids

11.58

Weight (kDa)

8.44

Isoelectric Point (pI)

71.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14010
fragaria_vesca	FvH4_4g13190
malus_domestica	MD04G1018100.v1.1
prunus_persica	Prupe.1G167100_v2.0.a1
pyrus_communis	pycom13g29140
rosa_chinensis	RchiOBHm_Chr4g0413341
rosa_multiflora	Rmu_sc0007671.1_g000002 Rmu_sc0009573.1_g000009
rosa_roxburghii	Rroxscaffold_5G00357260
rosa_rugosa	Rorug04G0120000
rosa_samantha	Rh4AG179400 Rh4BG178500 Rh4CG190000 Rh4DG174500
rosa_wichuraiana	Rw4G014910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	1 cut(s)	309
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	1 cut(s)	181
AluBI	AGCT	2 cut(s)	188, 236
AluI	AGCT	2 cut(s)	188, 236
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	60, 171
BauI	CACGAG	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	2 cut(s)	82, 127
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	12
BisI	GCNGC	1 cut(s)	292
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	1 cut(s)	183
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	68, 117
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	183
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	14, 314
BspACI	CCGC	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	14, 314
BssSI	CACGAG	1 cut(s)	322
Bst2BI	CACGAG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	17, 317
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	2 cut(s)	14, 314
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	183
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
CaiI	CAGNNNCTG	1 cut(s)	291
CfoI	GCGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	4 cut(s)	188, 236, 272, 291
CviKI_1	RGCY	4 cut(s)	188, 236, 272, 291
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	16, 316
DpnII	GATC	2 cut(s)	14, 314
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	90
FaiI	YATR	4 cut(s)	88, 101, 240, 282
FatI	CATG	1 cut(s)	86
Fnu4HI	GCNGC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	292
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	204
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	2 cut(s)	137, 320
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	2 cut(s)	60, 171
Hpy188I	TCNGA	2 cut(s)	142, 319
Hpy188III	TCNNGA	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	90, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	1 cut(s)	90
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	14, 314
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	5 cut(s)	168, 195, 219, 234, 282
Lsp1109I	GCAGC	1 cut(s)	278
LweI	GCATC	2 cut(s)	68, 117
MalI	GATC	2 cut(s)	16, 316
MboI	GATC	2 cut(s)	14, 314
MboII	GAAGA	2 cut(s)	205, 251
MflI	RGATCY	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	76, 245, 273, 276, 281
MslI	CAYNNNNRTG	1 cut(s)	85
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	291
NdeII	GATC	2 cut(s)	14, 314
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	97
NspI	RCATGY	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	293
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	85
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	2 cut(s)	14, 314
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	5 cut(s)	158, 184, 190, 238, 256
SfaNI	GCATC	2 cut(s)	68, 117
SgeI	CNNG	9 cut(s)	30, 99, 136, 173, 194, 195, 218, 261, 281
SmiMI	CAYNNNNRTG	1 cut(s)	85
SsiI	CCGC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	181
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	291
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.