Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012788.1

Orthogroup ID

OG0011099

Physical Location & Seq

Genomic Coordinates Reverse (-)

1851 .. 2180

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012788.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgggaagtggagtctccaccctctcctcttgcttcagatcggctcacccaacccccgaccacaacgacgtcgtcttctccgcctccgagcccttggacgaaaccctaggccattctttctgctatgtaaggtcctccgctcgcttcctctcccccactcagtcggatcgctttctttccccttccaactccctccggttctcgccgccgcacgaggcccgcgcccggcccggcctccccgagaccgggttcaaggccatctccggcgcctccgtcagagaaagtgaggaaagagaaaaccaaattccttatatttacagcaatctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043168 GO:0044464 GO:0048507 GO:0048532 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0080090 GO:0098727 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

109

Amino Acids

11.96

Weight (kDa)

6.04

Isoelectric Point (pI)

56.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35350
fragaria_vesca	FvH4_5g21630 FvH4_5g21630
malus_domestica	MD06G1031300.v1.1 MD16G1277400.v1.1
prunus_persica	Prupe.5G040900_v2.0.a1
pyrus_communis	pycom06g02610 pycom16g24670
rosa_chinensis	RchiOBHm_Chr7g0209091
rosa_laevigata	RLG00000003168
rosa_multiflora	Rmu_co8472153.1_g000001 Rmu_sc0000821.1_g000009 Rmu_sc0012788.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249760
rosa_rugosa	Rorug07G0109000
rosa_samantha	Rh7AG243400 Rh7BG238500 Rh7CG258600 Rh7DG250400
rosa_wichuraiana	Rw7G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	140
AccII	CGCG	1 cut(s)	222
AciI	CCGC	5 cut(s)	81, 138, 206, 209, 220
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	19
AcyI	GRCGYC	2 cut(s)	69, 267
AfiI	CCNNNNNNNGG	3 cut(s)	225, 245, 246
AgsI	TTSAA	1 cut(s)	253
Alw26I	GTCTC	2 cut(s)	19, 236
AlwI	GGATC	1 cut(s)	174
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	5 cut(s)	109, 216, 227, 232, 255
ApoI	RAATTY	1 cut(s)	303
AspA2I	CCTAGG	1 cut(s)	106
AspLEI	GCGC	2 cut(s)	224, 269
AspS9I	GGNCC	3 cut(s)	132, 217, 228
AsuC2I	CCSGG	3 cut(s)	226, 231, 247
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	132
AvrII	CCTAGG	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	93
BauI	CACGAG	1 cut(s)	212
BbsI	GAAGAC	1 cut(s)	67
BccI	CCATC	1 cut(s)	266
BcnI	CCSGG	3 cut(s)	226, 231, 247
BcoDI	GTCTC	2 cut(s)	19, 236
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	2 cut(s)	206, 209
BlnI	CCTAGG	1 cut(s)	106
BlsI	GCNGC	2 cut(s)	207, 210
Bme1390I	CCNGG	3 cut(s)	226, 231, 247
Bme18I	GGWCC	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	3 cut(s)	132, 217, 228
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	3 cut(s)	226, 231, 247
BpiI	GAAGAC	1 cut(s)	67
BpuMI	CCSGG	3 cut(s)	226, 231, 247
BsaHI	GRCGYC	2 cut(s)	69, 267
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	93, 106
BsaWI	WCCGGW	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 245, 246
BseDI	CCNNGG	2 cut(s)	93, 106
BseLI	CCNNNNNNNGG	3 cut(s)	225, 245, 246
BseMII	CTCAG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	5 cut(s)	111, 218, 229, 234, 257
BshNI	GGYRCC	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	5 cut(s)	196, 226, 231, 246, 264
BslI	CCNNNNNNNGG	3 cut(s)	225, 245, 246
BsmAI	GTCTC	2 cut(s)	19, 236
BsnI	GGCC	5 cut(s)	111, 218, 229, 234, 257
Bso31I	GGTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	38, 166
BspACI	CCGC	5 cut(s)	81, 138, 206, 209, 220
BspANI	GGCC	5 cut(s)	111, 218, 229, 234, 257
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	268
BspPI	GGATC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	93, 106
BssMI	GATC	2 cut(s)	38, 166
BssNI	GRCGYC	2 cut(s)	69, 267
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	2 cut(s)	93, 106
Bst2BI	CACGAG	1 cut(s)	212
BstACI	GRCGYC	2 cut(s)	69, 267
BstC8I	GCNNGC	2 cut(s)	142, 220
BstDEI	CTNAG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	2 cut(s)	224, 269
BstKTI	GATC	2 cut(s)	41, 169
BstMAI	GTCTC	2 cut(s)	19, 236
BstMBI	GATC	2 cut(s)	38, 166
BstSCI	CCNGG	3 cut(s)	224, 229, 245
BstUI	CGCG	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	67
BsuRI	GGCC	5 cut(s)	111, 218, 229, 234, 257
Cac8I	GCNNGC	2 cut(s)	142, 220
CfoI	GCGC	2 cut(s)	224, 269
Cfr13I	GGNCC	3 cut(s)	132, 217, 228
CviJI	RGCY	7 cut(s)	44, 91, 111, 218, 229, 234, 257
CviKI_1	RGCY	7 cut(s)	44, 91, 111, 218, 229, 234, 257
DdeI	CTNAG	1 cut(s)	159
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	2 cut(s)	40, 168
DpnII	GATC	2 cut(s)	38, 166
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	93, 106
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	132
Eco57I	CTGAAG	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	93, 106
EcoT38I	GRGCYC	1 cut(s)	93
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
ErhI	CCWWGG	2 cut(s)	93, 106
FaiI	YATR	2 cut(s)	126, 312
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	206, 209
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	206, 209
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	2 cut(s)	223, 268
GluI	GCNGC	2 cut(s)	206, 209
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	5 cut(s)	111, 218, 229, 234, 257
HapII	CCGG	5 cut(s)	196, 226, 231, 246, 264
HhaI	GCGC	2 cut(s)	224, 269
Hin1I	GRCGYC	2 cut(s)	69, 267
Hin6I	GCGC	2 cut(s)	222, 267
HinP1I	GCGC	2 cut(s)	222, 267
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	5 cut(s)	196, 226, 231, 246, 264
HphI	GGTGA	1 cut(s)	38
Hpy188I	TCNGA	4 cut(s)	38, 88, 166, 278
Hpy99I	CGWCG	2 cut(s)	71, 74
HpyAV	CCTTC	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	69
Hsp92I	GRCGYC	2 cut(s)	69, 267
HspAI	GCGC	2 cut(s)	222, 267
KasI	GGCGCC	1 cut(s)	266
Kzo9I	GATC	2 cut(s)	38, 166
LpnPI	CCDG	5 cut(s)	209, 239, 244, 259, 277
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	69
MalI	GATC	2 cut(s)	40, 168
MbiI	CCGCTC	1 cut(s)	140
MboI	GATC	2 cut(s)	38, 166
MboII	GAAGA	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	303
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	2 cut(s)	144, 210
MspI	CCGG	5 cut(s)	196, 226, 231, 246, 264
MspR9I	CCNGG	3 cut(s)	226, 231, 247
MvnI	CGCG	1 cut(s)	222
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	3 cut(s)	226, 231, 247
NdeII	GATC	2 cut(s)	38, 166
NlaIV	GGNNCC	1 cut(s)	268
PflFI	GACNNNGTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	207, 210
PleI	GAGTC	1 cut(s)	20
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	20
PpuMI	RGGWCCY	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	3 cut(s)	132, 217, 228
PspPPI	RGGWCCY	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	71
SatI	GCNGC	2 cut(s)	206, 209
Sau3AI	GATC	2 cut(s)	38, 166
Sau96I	GGNCC	3 cut(s)	132, 217, 228
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	3 cut(s)	226, 231, 247
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	2 cut(s)	72, 134
SfoI	GGCGCC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	132
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	5 cut(s)	81, 138, 206, 209, 220
SspDI	GGCGCC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	224, 229, 245
StyI	CCWWGG	2 cut(s)	93, 106
TaiI	ACGT	1 cut(s)	72
TasI	AATT	1 cut(s)	303
TauI	GCSGC	2 cut(s)	208, 211
TspGWI	ACGGA	1 cut(s)	262
Tth111I	GACNNNGTC	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	303
XmaJI	CCTAGG	1 cut(s)	106
XspI	CTAG	1 cut(s)	107
ZraI	GACGTC	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.