Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0011099

Physical Location & Seq

Genomic Coordinates Reverse (-)

8490112 .. 8493564

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0109000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGGAAAATCAAACTCGGAATCAATGGATTTGGAAGAATTGGAAGATTGGTCACAAGAGTGGCTTTGCAAAGAGACGATATTGATCTTGTTTGCATTAACGACCCCTACATCACGGCCGACTACATTGTCTACATGTTCAAGCACGACACTGTTCACGGTGCATGGAAGAATTGCGATGTGAAACTTAAGAATGCAAACCACGTTTACTTTGGTAACAAGGAAGTCACCATTTTTGCAATCAGCCGAGAAGACGAAATCCCTTGGTCCGGCCCCGGAGCCGAATACATCGTGGATGCCTCTGGTACTGCCACCGAAATCGAATTTGCTCAGGGCCATTTGAAGGGCGGAGCAAAGAAGGTTATTGTCACTTGCCCGTGTGATGGTGCTCCTGCGTTTGTTGTGGGTGTCAATGAGAAGGAATACAAGCCGGAGCTTAATGTTATTTCCGGTGCTAGTTGCACCACCAACTGCCTTGCCCCCCTTGCAAAGGTCATTCATGATAAATTTGGTATCATCGAGGGTCTGATGAGCACTGTTCACTCAGTTACTGCTAGCCAAAGAGGTGTTGATGGAACATGTCCTAATGATTGGAGACCTGGAAAAGCTGCACCAACTATCAAAGATTGGAGAATTGGAAGAGCTGCTTATATCAACATCATTCCCACTACTACCGGAGCTGCTAAGGCTGTTGGTAAAGTTCTACCTGACCTGGATGGTAAATTGACCGGAATGTCATTCCGTGTTCCTAGTCTTGATGTTTCGGTGGTAGACCTAACAGTGAGGCTAGAAAAGCCGGCTACGTATGAGGAAATAAAAGCTGCCATCAAGGAAGAGTCTGAGGGAAACCTGAAGGGAATCTTGGGTTACACTGAAGATGATGTGGTCTCTACCGACTTTGAGCATGACAGCAGGTCAAGTATTTTTGATGCAAAGGCCGGAATTGCTTTGAACGATAACTTCCACAAGTTGGTCGCATGGTACGACAACGAGTGGGGATACAGCACTCGCATCGTTGACTTGATGACCTACATTGCGTCATTTGATTCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005623 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009653 GO:0009826 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010073 GO:0010074 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019827 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043167 GO:0043168 GO:0044464 GO:0048507 GO:0048532 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0080090 GO:0098727 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

351

Amino Acids

38.24

Weight (kDa)

5.55

Isoelectric Point (pI)

23.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gp_dh_N	PF00044	4 - 105	6.9e-26	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
Gp_dh_C	PF02800	159 - 204	1e-12	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
Gp_dh_C	PF02800	206 - 328	1.9e-49	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35350
fragaria_vesca	FvH4_5g21630 FvH4_5g21630
malus_domestica	MD06G1031300.v1.1 MD16G1277400.v1.1
prunus_persica	Prupe.5G040900_v2.0.a1
pyrus_communis	pycom06g02610 pycom16g24670
rosa_chinensis	RchiOBHm_Chr7g0209091
rosa_laevigata	RLG00000003168
rosa_multiflora	Rmu_co8472153.1_g000001 Rmu_sc0000821.1_g000009 Rmu_sc0012788.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249760
rosa_rugosa	Rorug07G0109000
rosa_samantha	Rh7AG243400 Rh7BG238500 Rh7CG258600 Rh7DG250400
rosa_wichuraiana	Rw7G020630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	128, 733
Acc36I	ACCTGC	1 cut(s)	903
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccI	GTMKAC	2 cut(s)	132, 771
AciI	CCGC	1 cut(s)	348
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	2 cut(s)	323, 506
AcuI	CTGAAG	2 cut(s)	872, 894
AfaI	GTAC	2 cut(s)	307, 983
AfiI	CCNNNNNNNGG	5 cut(s)	269, 343, 383, 490, 970
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	2 cut(s)	135, 578
AgsI	TTSAA	3 cut(s)	142, 343, 952
AhdI	GACNNNNNGTC	1 cut(s)	913
AjnI	CCWGG	2 cut(s)	598, 711
AjuI	GAANNNNNNNTTGG	2 cut(s)	845, 877
AleI	CACNNNNGTG	1 cut(s)	59
AluBI	AGCT	5 cut(s)	436, 608, 644, 680, 821
AluI	AGCT	5 cut(s)	436, 608, 644, 680, 821
Alw21I	GWGCWC	2 cut(s)	391, 536
Alw26I	GTCTC	3 cut(s)	69, 589, 892
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	4 cut(s)	117, 271, 334, 936
ApeKI	GCWGC	4 cut(s)	608, 644, 680, 821
ApoI	RAATTY	2 cut(s)	323, 506
AspS9I	GGNCC	3 cut(s)	267, 272, 334
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	220
AsuNHI	GCTAGC	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	2 cut(s)	391, 536
BbvI	GCAGC	4 cut(s)	595, 631, 667, 808
BccI	CCATC	4 cut(s)	377, 566, 710, 833
BceAI	ACGGC	1 cut(s)	132
BcgI	CGANNNNNNTGC	2 cut(s)	994, 1028
BciT130I	CCWGG	2 cut(s)	600, 713
BciVI	GTATCC	1 cut(s)	992
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	69, 589, 892
BfaI	CTAG	4 cut(s)	456, 555, 750, 788
BfrI	CTTAAG	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	903
BfuI	GTATCC	1 cut(s)	992
BisI	GCNGC	4 cut(s)	609, 645, 681, 822
BlsI	GCNGC	4 cut(s)	610, 646, 682, 823
Bme1390I	CCNGG	3 cut(s)	276, 600, 713
Bme18I	GGWCC	1 cut(s)	267
BmeRI	GACNNNNNGTC	1 cut(s)	913
BmgT120I	GGNCC	3 cut(s)	267, 272, 334
BmiI	GGNNCC	2 cut(s)	274, 280
BmrFI	CCNGG	3 cut(s)	276, 600, 713
BmsI	GCATC	3 cut(s)	286, 919, 1020
BmtI	GCTAGC	1 cut(s)	558
BpiI	GAAGAC	1 cut(s)	258
Bpu10I	CCTNAGC	2 cut(s)	330, 684
BpuMI	CCSGG	1 cut(s)	276
BsaAI	YACGTR	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	84
BsaI	GGTCTC	2 cut(s)	589, 892
BsaJI	CCNNGG	2 cut(s)	263, 274
BsaWI	WCCGGW	3 cut(s)	449, 674, 728
Bsc4I	CCNNNNNNNGG	5 cut(s)	269, 343, 383, 490, 970
Bse118I	RCCGGY	1 cut(s)	796
Bse3DI	GCAATG	1 cut(s)	1032
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	600, 713
BseDI	CCNNGG	2 cut(s)	263, 274
BseGI	GGATG	2 cut(s)	301, 721
BseJI	GATNNNNATC	1 cut(s)	84
BseLI	CCNNNNNNNGG	5 cut(s)	269, 343, 383, 490, 970
BseMI	GCAATG	1 cut(s)	1032
BseMII	CTCAG	3 cut(s)	344, 558, 831
BseX3I	CGGCCG	1 cut(s)	117
BseXI	GCAGC	4 cut(s)	595, 631, 667, 808
BsgI	GTGCAG	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	119, 273, 336, 938
BsiEI	CGRYCG	1 cut(s)	120
BsiHKAI	GWGCWC	2 cut(s)	391, 536
BsiSI	CCGG	8 cut(s)	270, 276, 431, 450, 675, 729, 797, 939
BslI	CCNNNNNNNGG	5 cut(s)	269, 343, 383, 490, 970
BsmAI	GTCTC	3 cut(s)	69, 589, 892
BsmBI	CGTCTC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	4 cut(s)	119, 273, 336, 938
Bso31I	GGTCTC	2 cut(s)	589, 892
Bsp1286I	GDGCHC	2 cut(s)	391, 536
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	4 cut(s)	119, 273, 336, 938
BspCNI	CTCAG	3 cut(s)	343, 557, 832
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	274, 280
BspMI	ACCTGC	1 cut(s)	903
BspOI	GCTAGC	1 cut(s)	558
BspQI	GCTCTTC	1 cut(s)	634
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	2 cut(s)	589, 892
BsrDI	GCAATG	1 cut(s)	1032
BsrFI	RCCGGY	1 cut(s)	796
BssAI	RCCGGY	1 cut(s)	796
BssECI	CCNNGG	2 cut(s)	263, 274
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	2 cut(s)	600, 713
Bst4CI	ACNGT	4 cut(s)	154, 161, 538, 781
Bst6I	CTCTTC	2 cut(s)	634, 828
BstAFI	CTTAAG	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	804
BstC8I	GCNNGC	2 cut(s)	556, 798
BstDEI	CTNAG	4 cut(s)	330, 544, 684, 840
BstENI	CCTNNNNNAGG	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	301, 721
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	3 cut(s)	69, 589, 892
BstMBI	GATC	1 cut(s)	85
BstMCI	CGRYCG	1 cut(s)	120
BstMWI	GCNNNNNNNGC	4 cut(s)	485, 686, 793, 944
BstNI	CCWGG	2 cut(s)	600, 713
BstNSI	RCATGY	2 cut(s)	139, 582
BstSCI	CCNGG	3 cut(s)	274, 598, 711
BstSNI	TACGTA	1 cut(s)	804
BstV1I	GCAGC	4 cut(s)	595, 631, 667, 808
BstV2I	GAAGAC	1 cut(s)	258
BstZI	CGGCCG	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	992
BsuRI	GGCC	4 cut(s)	119, 273, 336, 938
BtgZI	GCGATG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	301, 721
BtsIMutI	CAGTG	4 cut(s)	150, 534, 786, 870
BveI	ACCTGC	1 cut(s)	903
Cac8I	GCNNGC	2 cut(s)	556, 798
CaiI	CAGNNNCTG	1 cut(s)	551
CciI	TCATGA	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	796
Cfr13I	GGNCC	3 cut(s)	267, 272, 334
CseI	GACGC	1 cut(s)	1026
Csp6I	GTAC	2 cut(s)	306, 982
CviAII	CATG	6 cut(s)	136, 165, 500, 579, 905, 978
CviQI	GTAC	2 cut(s)	306, 982
DdeI	CTNAG	4 cut(s)	330, 544, 684, 840
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DrdI	GACNNNNNNGTC	2 cut(s)	128, 733
DriI	GACNNNNNGTC	1 cut(s)	913
DseDI	GACNNNNNNGTC	2 cut(s)	128, 733
EaeI	YGGCCR	1 cut(s)	117
EagI	CGGCCG	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	634, 828
Eam1105I	GACNNNNNGTC	1 cut(s)	913
EarI	CTCTTC	2 cut(s)	634, 828
EciI	GGCGGA	1 cut(s)	363
EclXI	CGGCCG	1 cut(s)	117
Eco105I	TACGTA	1 cut(s)	804
Eco130I	CCWWGG	1 cut(s)	263
Eco31I	GGTCTC	2 cut(s)	589, 892
Eco47I	GGWCC	1 cut(s)	267
Eco52I	CGGCCG	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	872, 894
EcoNI	CCTNNNNNAGG	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	598, 711
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
Esp3I	CGTCTC	1 cut(s)	69
FaeI	CATG	6 cut(s)	139, 168, 503, 582, 908, 981
FaiI	YATR	9 cut(s)	137, 166, 501, 580, 651, 807, 906, 979, 1054
FalI	AAGNNNNNCTT	6 cut(s)	49, 81, 631, 663, 845, 877
FatI	CATG	6 cut(s)	135, 164, 499, 578, 904, 977
FblI	GTMKAC	2 cut(s)	132, 771
Fnu4HI	GCNGC	4 cut(s)	609, 645, 681, 822
FokI	GGATG	2 cut(s)	308, 728
Fsp4HI	GCNGC	4 cut(s)	609, 645, 681, 822
FspBI	CTAG	4 cut(s)	456, 555, 750, 788
GluI	GCNGC	4 cut(s)	609, 645, 681, 822
HaeIII	GGCC	4 cut(s)	119, 273, 336, 938
HapII	CCGG	8 cut(s)	270, 276, 431, 450, 675, 729, 797, 939
HgaI	GACGC	1 cut(s)	1026
Hin1II	CATG	6 cut(s)	139, 168, 503, 582, 908, 981
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HinfI	GANTC	4 cut(s)	21, 836, 858, 1046
HpaII	CCGG	8 cut(s)	270, 276, 431, 450, 675, 729, 797, 939
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	6 cut(s)	133, 157, 208, 541, 772, 1018
Hpy188I	TCNGA	3 cut(s)	20, 528, 841
Hpy188III	TCNNGA	2 cut(s)	500, 755
Hpy8I	GTNNAC	6 cut(s)	133, 157, 208, 541, 772, 1018
HpyAV	CCTTC	4 cut(s)	337, 352, 412, 847
HpyCH4III	ACNGT	4 cut(s)	154, 161, 538, 781
HpyCH4IV	ACGT	2 cut(s)	204, 803
HpyCH4V	TGCA	9 cut(s)	70, 96, 164, 197, 239, 462, 488, 611, 932
HpyF10VI	GCNNNNNNNGC	4 cut(s)	485, 686, 793, 944
HpyF3I	CTNAG	4 cut(s)	330, 544, 684, 840
HpySE526I	ACGT	2 cut(s)	204, 803
Hsp92II	CATG	6 cut(s)	139, 168, 503, 582, 908, 981
KroI	GCCGGC	1 cut(s)	796
KroNI	GCCGGC	1 cut(s)	798
Kzo9I	GATC	1 cut(s)	85
LguI	GCTCTTC	1 cut(s)	634
LmnI	GCTCC	5 cut(s)	278, 350, 394, 433, 677
Lsp1109I	GCAGC	4 cut(s)	595, 631, 667, 808
LweI	GCATC	3 cut(s)	286, 919, 1020
MaeI	CTAG	4 cut(s)	456, 555, 750, 788
MaeII	ACGT	2 cut(s)	204, 803
MaeIII	GTNAC	6 cut(s)	52, 215, 226, 367, 547, 866
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	7 cut(s)	48, 57, 181, 263, 651, 845, 887
MhlI	GDGCHC	2 cut(s)	391, 536
MluCI	AATT	7 cut(s)	39, 172, 323, 506, 633, 722, 942
MlyI	GAGTC	1 cut(s)	845
MnlI	CCTC	6 cut(s)	310, 514, 557, 777, 802, 835
MroNI	GCCGGC	1 cut(s)	796
MseI	TTAA	3 cut(s)	99, 189, 438
MslI	CAYNNNNRTG	1 cut(s)	59
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	8 cut(s)	270, 276, 431, 450, 675, 729, 797, 939
MspR9I	CCNGG	3 cut(s)	276, 600, 713
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	2 cut(s)	600, 713
MwoI	GCNNNNNNNGC	4 cut(s)	485, 686, 793, 944
NaeI	GCCGGC	1 cut(s)	798
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	85
NgoMIV	GCCGGC	1 cut(s)	796
NheI	GCTAGC	1 cut(s)	554
NlaIII	CATG	6 cut(s)	139, 168, 503, 582, 908, 981
NlaIV	GGNNCC	2 cut(s)	274, 280
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	3 cut(s)	52, 226, 367
NspI	RCATGY	2 cut(s)	139, 582
OliI	CACNNNNGTG	1 cut(s)	59
PagI	TCATGA	1 cut(s)	499
PciI	ACATGT	2 cut(s)	135, 578
PciSI	GCTCTTC	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	981
PctI	GAATGC	1 cut(s)	199
PdiI	GCCGGC	1 cut(s)	798
PfeI	GAWTC	3 cut(s)	21, 858, 1046
PflMI	CCANNNNNTGG	1 cut(s)	970
PkrI	GCNGC	4 cut(s)	610, 646, 682, 823
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
Ppu21I	YACGTR	1 cut(s)	804
PscI	ACATGT	2 cut(s)	135, 578
Psp6I	CCWGG	2 cut(s)	598, 711
PspGI	CCWGG	2 cut(s)	598, 711
PspN4I	GGNNCC	2 cut(s)	274, 280
PspPI	GGNCC	3 cut(s)	267, 272, 334
PstNI	CAGNNNCTG	1 cut(s)	551
RsaI	GTAC	2 cut(s)	307, 983
RsaNI	GTAC	2 cut(s)	306, 982
RseI	CAYNNNNRTG	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	99, 189, 438
SatI	GCNGC	4 cut(s)	609, 645, 681, 822
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	3 cut(s)	267, 272, 334
SchI	GAGTC	1 cut(s)	845
ScrFI	CCNGG	3 cut(s)	276, 600, 713
SduI	GDGCHC	2 cut(s)	391, 536
SfaNI	GCATC	3 cut(s)	286, 919, 1020
SinI	GGWCC	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SnaBI	TACGTA	1 cut(s)	804
Sse9I	AATT	7 cut(s)	39, 172, 323, 506, 633, 722, 942
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	4 cut(s)	456, 555, 750, 788
StyD4I	CCNGG	3 cut(s)	274, 598, 711
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	4 cut(s)	154, 161, 538, 781
TaiI	ACGT	2 cut(s)	207, 806
TaqI	TCGA	2 cut(s)	321, 519
TasI	AATT	7 cut(s)	39, 172, 323, 506, 633, 722, 942
TfiI	GAWTC	3 cut(s)	21, 858, 1046
Tru1I	TTAA	3 cut(s)	99, 189, 438
Tru9I	TTAA	3 cut(s)	99, 189, 438
TscAI	CASTG	4 cut(s)	157, 541, 786, 877
TseFI	GTSAC	3 cut(s)	52, 226, 367
TseI	GCWGC	4 cut(s)	608, 644, 680, 821
Tsp45I	GTSAC	3 cut(s)	52, 226, 367
TspDTI	ATGAA	1 cut(s)	488
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	4 cut(s)	157, 541, 786, 877
Van91I	CCANNNNNTGG	1 cut(s)	970
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	267
XagI	CCTNNNNNAGG	1 cut(s)	488
XapI	RAATTY	2 cut(s)	323, 506
XceI	RCATGY	2 cut(s)	139, 582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	209
XmiI	GTMKAC	2 cut(s)	132, 771
XspI	CTAG	4 cut(s)	456, 555, 750, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.