Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014039.1

Orthogroup ID

OG0005063

Physical Location & Seq

Genomic Coordinates Forward (+)

49569 .. 50941

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014039.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1036 bp

atggctcagtacagacagtcagggatggagactaggttgggattacgtggcggcaacggcggggatggaccagatcacgtcgctatcgggatccgaacgggtctacataaaccgggtcggactcgccgatcgggtcgatccccacctagaatctctacttgtgctttagttctcgttctctccttggttctcctttttactgttgccgcctacttttacctctccctcagcaccaccacacccacaggtgcggaaataaatagtaatcgttctcgggaagatgatttgaggaatgattctgactttctcacgaatgtgacacgcaccgagacttctaaagtgcttaagtttggcaagggttcagtgacgcatggcagggattctaggtattgggataaagatgataggagaagggatgaagactataatgaggatgtggtggagcatggtggcgcaggtgttgatgatgcatctactcgtgcgactcaagttaagaacagtaagaacaagtccgagaatgatgagtttcttaacagttccaataagaaagctggattgtacaatgaagctgggcgcaaggagttgaaaatttacgaagcagagtatgaggcatctttgaagaacaatcgacagtctaatgatggatatttggaaacgcgaaatgacgttattgatgctgatgatgagtatgatgatgggatcgattctcgtgaaactcatatggaagaatatgatgatactagacatcaaaatggtgaccattttagtgaagaaaaattacatgatgaaggtggtagagagtccattgatcttcctgatgctggaatcaattatgaaaatgtctccaagaaggttgataaagtctccaccaattcatttaatgagcactctgcccagtactctcggaatcttgatgaagttaacacaaattctaggcatgttggtgtaatttccggtcattcttcaagaaaatcgcactcagaatcaaaaaggaaagcaaagcgccacaaattttctggtaacatatcctttatcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

345

Amino Acids

38.75

Weight (kDa)

6.04

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34550 AT1G34550 AT4G09630 AT4G09630
fragaria_vesca	FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770
malus_domestica	MD05G1041100.v1.1 MD10G1047500.v1.1
prunus_persica	Prupe.8G056900_v2.0.a1 Prupe.8G056900_v2.0.a1 Prupe.8G056900_v2.0.a1
pyrus_communis	pycom05g03390 pycom10g03360
rosa_chinensis	RchiOBHm_Chr6g0272041
rosa_laevigata	RLG00000013705
rosa_multiflora	Rmu_sc0005786.1_g000005 Rmu_sc0013301.1_g000001 Rmu_sc0014039.1_g000012
rosa_rugosa	Rorug06G0065400
rosa_samantha	Rh6AG182600 Rh6BG184400 Rh6CG183700 Rh6DG175300
rosa_wichuraiana	Rw6G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	446
Acc36I	ACCTGC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	103
AccII	CGCG	1 cut(s)	658
AciI	CCGC	4 cut(s)	51, 60, 207, 251
AclWI	GGATC	4 cut(s)	85, 98, 132, 707
AcsI	RAATTY	3 cut(s)	588, 928, 1010
AfaI	GTAC	3 cut(s)	11, 560, 899
AfiI	CCNNNNNNNGG	1 cut(s)	821
AflII	CTTAAG	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	586, 619, 966
AjiI	CACGTC	1 cut(s)	79
AleI	CACNNNNGTG	1 cut(s)	314
AluBI	AGCT	2 cut(s)	551, 569
AluI	AGCT	2 cut(s)	551, 569
Alw21I	GWGCWC	1 cut(s)	888
Alw26I	GTCTC	4 cut(s)	23, 323, 847, 868
AlwI	GGATC	4 cut(s)	85, 98, 132, 707
Ama87I	CYCGRG	1 cut(s)	273
ApoI	RAATTY	3 cut(s)	588, 928, 1010
AspLEI	GCGC	3 cut(s)	455, 576, 1005
AspS9I	GGNCC	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	767
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	762, 794
BauI	CACGAG	2 cut(s)	477, 708
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	888
BbvCI	CCTCAGC	1 cut(s)	227
BccI	CCATC	4 cut(s)	19, 59, 635, 689
BceAI	ACGGC	1 cut(s)	73
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	4 cut(s)	23, 323, 847, 868
BfaI	CTAG	5 cut(s)	33, 147, 384, 741, 933
BfoI	RGCGCY	1 cut(s)	1006
BfrI	CTTAAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	446
BisI	GCNGC	2 cut(s)	52, 207
BlsI	GCNGC	2 cut(s)	53, 208
BmcAI	AGTACT	1 cut(s)	899
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	273
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	114
BmrI	ACTGGG	1 cut(s)	889
BmsI	GCATC	5 cut(s)	457, 479, 620, 664, 808
BmuI	ACTGGG	1 cut(s)	889
BpiI	GAAGAC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	114
Bsa29I	ATCGAT	1 cut(s)	702
BsaAI	YACGTR	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	953
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	1 cut(s)	895
BseCI	ATCGAT	1 cut(s)	702
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	4 cut(s)	30, 70, 421, 439
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMII	CTCAG	3 cut(s)	20, 241, 993
BseNI	ACTGG	1 cut(s)	895
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	658
Bsh1285I	CGRYCG	1 cut(s)	131
BshVI	ATCGAT	1 cut(s)	702
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	888
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	113, 954
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	4 cut(s)	23, 323, 847, 868
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	888
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	6 cut(s)	73, 90, 128, 137, 699, 808
BspACI	CCGC	4 cut(s)	51, 60, 207, 251
BspCNI	CTCAG	3 cut(s)	19, 240, 992
BspDI	ATCGAT	1 cut(s)	702
BspFNI	CGCG	1 cut(s)	658
BspLI	GGNNCC	1 cut(s)	92
BspMI	ACCTGC	1 cut(s)	446
BspPI	GGATC	4 cut(s)	85, 98, 132, 707
BspTI	CTTAAG	1 cut(s)	344
BsrGI	TGTACA	1 cut(s)	558
BsrI	ACTGG	1 cut(s)	895
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	6 cut(s)	73, 90, 128, 137, 699, 808
BssSI	CACGAG	2 cut(s)	477, 708
BssT1I	CCWWGG	1 cut(s)	183
Bst2BI	CACGAG	2 cut(s)	477, 708
Bst4CI	ACNGT	5 cut(s)	18, 202, 500, 536, 633
BstAFI	CTTAAG	1 cut(s)	344
BstAUI	TGTACA	1 cut(s)	558
BstBAI	YACGTR	1 cut(s)	47
BstDEI	CTNAG	3 cut(s)	6, 227, 979
BstEII	GGTNACC	1 cut(s)	755
BstF5I	GGATG	4 cut(s)	30, 70, 421, 439
BstFNI	CGCG	1 cut(s)	658
BstH2I	RGCGCY	1 cut(s)	1006
BstHHI	GCGC	3 cut(s)	455, 576, 1005
BstKTI	GATC	6 cut(s)	76, 93, 131, 140, 702, 811
BstMAI	GTCTC	4 cut(s)	23, 323, 847, 868
BstMBI	GATC	6 cut(s)	73, 90, 128, 137, 699, 808
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	941
BstPI	GGTNACC	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	702
BsuTUI	ATCGAT	1 cut(s)	702
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	30, 70, 421, 439
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	446
CfoI	GCGC	3 cut(s)	455, 576, 1005
Cfr13I	GGNCC	1 cut(s)	68
ClaI	ATCGAT	1 cut(s)	702
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	10, 559, 898
CviAII	CATG	4 cut(s)	371, 446, 782, 938
CviJI	RGCY	3 cut(s)	5, 551, 569
CviKI_1	RGCY	3 cut(s)	5, 551, 569
CviQI	GTAC	3 cut(s)	10, 559, 898
DdeI	CTNAG	3 cut(s)	6, 227, 979
DpnI	GATC	6 cut(s)	75, 92, 130, 139, 701, 810
DpnII	GATC	6 cut(s)	73, 90, 128, 137, 699, 808
Eco130I	CCWWGG	1 cut(s)	183
Eco47I	GGWCC	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	273
Eco91I	GGTNACC	1 cut(s)	755
EcoO65I	GGTNACC	1 cut(s)	755
EcoT14I	CCWWGG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	4 cut(s)	374, 449, 785, 941
FatI	CATG	4 cut(s)	370, 445, 781, 937
FauI	CCCGC	1 cut(s)	53
FauNDI	CATATG	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	103
Fnu4HI	GCNGC	2 cut(s)	52, 207
FokI	GGATG	4 cut(s)	37, 77, 428, 446
Fsp4HI	GCNGC	2 cut(s)	52, 207
FspBI	CTAG	5 cut(s)	33, 147, 384, 741, 933
GlaI	GCGC	3 cut(s)	454, 575, 1004
GluI	GCNGC	2 cut(s)	52, 207
GsaI	CCCAGC	1 cut(s)	573
HaeII	RGCGCY	1 cut(s)	1006
HapII	CCGG	2 cut(s)	113, 954
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	3 cut(s)	455, 576, 1005
Hin1II	CATG	4 cut(s)	374, 449, 785, 941
Hin6I	GCGC	3 cut(s)	453, 574, 1003
HinP1I	GCGC	3 cut(s)	453, 574, 1003
HincII	GTYRAC	1 cut(s)	922
HindII	GTYRAC	1 cut(s)	922
HpaI	GTTAAC	1 cut(s)	922
HpaII	CCGG	2 cut(s)	113, 954
HphI	GGTGA	1 cut(s)	767
Hpy166II	GTNNAC	2 cut(s)	104, 922
Hpy188I	TCNGA	6 cut(s)	95, 120, 301, 514, 906, 982
Hpy188III	TCNNGA	7 cut(s)	88, 275, 310, 710, 815, 911, 966
Hpy8I	GTNNAC	2 cut(s)	104, 922
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	3 cut(s)	405, 782, 844
HpyCH4III	ACNGT	5 cut(s)	18, 202, 500, 536, 633
HpyCH4IV	ACGT	3 cut(s)	46, 78, 666
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	3 cut(s)	6, 227, 979
HpySE526I	ACGT	3 cut(s)	46, 78, 666
Hsp92II	CATG	4 cut(s)	374, 449, 785, 941
HspAI	GCGC	3 cut(s)	453, 574, 1003
KspAI	GTTAAC	1 cut(s)	922
Kzo9I	GATC	6 cut(s)	73, 90, 128, 137, 699, 808
LmnI	GCTCC	1 cut(s)	442
LweI	GCATC	5 cut(s)	457, 479, 620, 664, 808
MaeI	CTAG	5 cut(s)	33, 147, 384, 741, 933
MaeII	ACGT	3 cut(s)	46, 78, 666
MaeIII	GTNAC	4 cut(s)	316, 364, 755, 1019
MalI	GATC	6 cut(s)	75, 92, 130, 139, 701, 810
MboI	GATC	6 cut(s)	73, 90, 128, 137, 699, 808
MboII	GAAGA	7 cut(s)	290, 431, 631, 737, 782, 803, 954
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	888
MluCI	AATT	7 cut(s)	588, 776, 829, 871, 928, 948, 1010
MlyI	GAGTC	3 cut(s)	115, 478, 809
MmeI	TCCRAC	1 cut(s)	98
MnlI	CCTC	5 cut(s)	230, 236, 282, 424, 601
Mph1103I	ATGCAT	1 cut(s)	472
MseI	TTAA	5 cut(s)	345, 492, 531, 879, 921
MslI	CAYNNNNRTG	4 cut(s)	314, 750, 765, 942
MspCI	CTTAAG	1 cut(s)	344
MspI	CCGG	2 cut(s)	113, 954
MspR9I	CCNGG	1 cut(s)	114
MvnI	CGCG	1 cut(s)	658
MwoI	GCNNNNNNNGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	114
NdeI	CATATG	1 cut(s)	720
NdeII	GATC	6 cut(s)	73, 90, 128, 137, 699, 808
NlaIII	CATG	4 cut(s)	374, 449, 785, 941
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	3 cut(s)	316, 364, 755
NsiI	ATGCAT	1 cut(s)	472
NspI	RCATGY	1 cut(s)	941
OliI	CACNNNNGTG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	7 cut(s)	150, 296, 380, 704, 825, 907, 983
PkrI	GCNGC	2 cut(s)	53, 208
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	3 cut(s)	115, 478, 808
PpsI	GAGTC	3 cut(s)	115, 478, 808
Ppu21I	YACGTR	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	755
PspFI	CCCAGC	1 cut(s)	569
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	90
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	3 cut(s)	11, 560, 899
RsaNI	GTAC	3 cut(s)	10, 559, 898
RseI	CAYNNNNRTG	4 cut(s)	314, 750, 765, 942
SaqAI	TTAA	5 cut(s)	345, 492, 531, 879, 921
SatI	GCNGC	2 cut(s)	52, 207
Sau3AI	GATC	6 cut(s)	73, 90, 128, 137, 699, 808
Sau96I	GGNCC	1 cut(s)	68
ScaI	AGTACT	1 cut(s)	899
SchI	GAGTC	3 cut(s)	115, 478, 809
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	888
SfaNI	GCATC	5 cut(s)	457, 479, 620, 664, 808
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	4 cut(s)	314, 750, 765, 942
SmlI	CTYRAG	2 cut(s)	344, 486
SmoI	CTYRAG	2 cut(s)	344, 486
Sse9I	AATT	7 cut(s)	588, 776, 829, 871, 928, 948, 1010
SsiI	CCGC	4 cut(s)	51, 60, 207, 251
SspMI	CTAG	5 cut(s)	33, 147, 384, 741, 933
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	5 cut(s)	18, 202, 500, 536, 633
TaiI	ACGT	3 cut(s)	49, 81, 669
TaqI	TCGA	3 cut(s)	136, 628, 702
TasI	AATT	7 cut(s)	588, 776, 829, 871, 928, 948, 1010
TatI	WGTACW	3 cut(s)	9, 558, 897
TauI	GCSGC	2 cut(s)	54, 209
TfiI	GAWTC	7 cut(s)	150, 296, 380, 704, 825, 907, 983
Tru1I	TTAA	5 cut(s)	345, 492, 531, 879, 921
Tru9I	TTAA	5 cut(s)	345, 492, 531, 879, 921
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	3 cut(s)	316, 364, 755
Tsp45I	GTSAC	3 cut(s)	316, 364, 755
TspDTI	ATGAA	6 cut(s)	432, 579, 801, 849, 864, 930
TspRI	CASTG	1 cut(s)	369
Vha464I	CTTAAG	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	3 cut(s)	588, 928, 1010
XceI	RCATGY	1 cut(s)	941
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	103
XspI	CTAG	5 cut(s)	33, 147, 384, 741, 933
ZrmI	AGTACT	1 cut(s)	899
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.