Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005063

Physical Location & Seq

Genomic Coordinates Reverse (-)

8658758 .. 8663788

Gene Structure 5031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0065400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCTAGTCAATAACCTTGAACATGTGGATTACTCTGAACATATGGCTAATTGTGACAAATTTCATGTCTGGAAGCTTTATATTCTTCATTTATCTTGCTGTTTTAATATTGGGTATGTGCTACTGAATGATTTTTCTCAACTTCTAAGATGTTTACAGCTACCTTATCATGACATCACACTAGAGGCTGCATGGCCTGAGCTGTTCATTGACCATAAAGGACAATATTGGGATGTACCGGAGTCAATTTCCTTAGATCTGTCATCACTTGTTTCTGAATCTGGATTGCGGTACTGGGTTGGTATACATAAAAATAGTGGCCATCCCCAGGCAGTTAATGCCGTAAATGATGAGGCACCTACTTCTCTGATGCCTGGATTGTGTGCAAAGGCTGCCTTTTCTTATGAAAAGAGCAGAGACCTTTGGAGGCAGAAGGAGACACAGAATGATCTCATGGTAAAGAAAGACAGGGGTTGGTTTTGGCGGCCATCATATGATGTGCGTCTCAAAGAACCTCATGCTGCAGTATCTGGAATTTTTGGTGGGAGCTTTGCAGCCTGGTTTCAGGATGGGCACAGCCCAGTGGCTGTTGAACTTAGAGGAGATGGGAACACTTCTTCAAGTACTAAGAAGAGAAGTCCTGTCAGTGCTGATTTTTTTGGTTCAATTTGCTATCGCTTCCAGCATGGGAAATTTCGAGAGCTTTATGGGGATCTTTCAACAGCAGGGGAAATTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF616

Protein Analysis

246

Amino Acids

27.98

Weight (kDa)

6.11

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34550 AT1G34550 AT4G09630 AT4G09630
fragaria_vesca	FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770 FvH4_2g11770
malus_domestica	MD05G1041100.v1.1 MD10G1047500.v1.1
prunus_persica	Prupe.8G056900_v2.0.a1 Prupe.8G056900_v2.0.a1 Prupe.8G056900_v2.0.a1
pyrus_communis	pycom05g03390 pycom10g03360
rosa_chinensis	RchiOBHm_Chr6g0272041
rosa_laevigata	RLG00000013705
rosa_multiflora	Rmu_sc0005786.1_g000005 Rmu_sc0013301.1_g000001 Rmu_sc0014039.1_g000012
rosa_rugosa	Rorug06G0065400
rosa_samantha	Rh6AG182600 Rh6BG184400 Rh6CG183700 Rh6DG175300
rosa_wichuraiana	Rw6G015710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AccI	GTMKAC	1 cut(s)	304
AciI	CCGC	2 cut(s)	289, 484
AclWI	GGATC	1 cut(s)	720
AcoI	YGGCCR	2 cut(s)	319, 485
AcsI	RAATTY	4 cut(s)	59, 534, 692, 732
AfaI	GTAC	3 cut(s)	237, 293, 625
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	5 cut(s)	20, 593, 621, 666, 720
AjnI	CCWGG	3 cut(s)	327, 373, 557
AluBI	AGCT	5 cut(s)	76, 160, 202, 549, 703
AluI	AGCT	5 cut(s)	76, 160, 202, 549, 703
Alw26I	GTCTC	3 cut(s)	411, 431, 509
AlwI	GGATC	1 cut(s)	720
AlwNI	CAGNNNCTG	2 cut(s)	530, 587
AoxI	GGCC	3 cut(s)	194, 319, 485
ApeKI	GCWGC	4 cut(s)	188, 392, 521, 554
ApoI	RAATTY	4 cut(s)	59, 534, 692, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
BaeGI	GKGCMC	1 cut(s)	576
BalI	TGGCCA	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	355
BbvI	GCAGC	4 cut(s)	175, 379, 508, 566
BccI	CCATC	4 cut(s)	330, 496, 563, 599
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	3 cut(s)	329, 375, 559
BcoDI	GTCTC	3 cut(s)	411, 431, 509
BfaI	CTAG	2 cut(s)	5, 182
BfmI	CTRYAG	1 cut(s)	522
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	5 cut(s)	189, 393, 485, 522, 555
BlsI	GCNGC	5 cut(s)	190, 394, 486, 523, 556
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	3 cut(s)	329, 375, 559
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	3 cut(s)	329, 375, 559
BmrI	ACTGGG	2 cut(s)	304, 575
BmsI	GCATC	1 cut(s)	360
BmuI	ACTGGG	2 cut(s)	304, 575
Bpu10I	CCTNAGC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	2 cut(s)	299, 581
BseBI	CCWGG	3 cut(s)	329, 375, 559
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	3 cut(s)	238, 322, 574
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	299, 581
BseRI	GAGGAG	1 cut(s)	615
BseSI	GKGCMC	1 cut(s)	576
BseXI	GCAGC	4 cut(s)	175, 379, 508, 566
BshFI	GGCC	3 cut(s)	196, 321, 487
BshNI	GGYRCC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	3 cut(s)	411, 431, 509
BsmBI	CGTCTC	1 cut(s)	509
BsnI	GGCC	3 cut(s)	196, 321, 487
Bso31I	GGTCTC	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	3 cut(s)	256, 448, 712
BspACI	CCGC	2 cut(s)	289, 484
BspANI	GGCC	3 cut(s)	196, 321, 487
BspCNI	CTCAG	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	720
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	299, 581
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	3 cut(s)	256, 448, 712
BssNAI	GTATAC	1 cut(s)	305
Bst1107I	GTATAC	1 cut(s)	305
Bst2UI	CCWGG	3 cut(s)	329, 375, 559
Bst6I	CTCTTC	1 cut(s)	626
BstAPI	GCANNNNNTGC	2 cut(s)	338, 392
BstDEI	CTNAG	5 cut(s)	146, 198, 253, 596, 627
BstF5I	GGATG	3 cut(s)	238, 322, 574
BstKTI	GATC	3 cut(s)	259, 451, 715
BstMAI	GTCTC	3 cut(s)	411, 431, 509
BstMBI	GATC	3 cut(s)	256, 448, 712
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 392
BstNI	CCWGG	3 cut(s)	329, 375, 559
BstNSI	RCATGY	1 cut(s)	26
BstSCI	CCNGG	3 cut(s)	327, 373, 557
BstSFI	CTRYAG	1 cut(s)	522
BstSLI	GKGCMC	1 cut(s)	576
BstV1I	GCAGC	4 cut(s)	175, 379, 508, 566
BstX2I	RGATCY	2 cut(s)	256, 712
BstYI	RGATCY	2 cut(s)	256, 712
BstZ17I	GTATAC	1 cut(s)	305
BsuRI	GGCC	3 cut(s)	196, 321, 487
BtsCI	GGATG	3 cut(s)	238, 322, 574
BtsIMutI	CAGTG	2 cut(s)	588, 652
CaiI	CAGNNNCTG	2 cut(s)	530, 587
CciI	TCATGA	1 cut(s)	169
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	3 cut(s)	236, 292, 624
CviAII	CATG	7 cut(s)	23, 65, 170, 192, 454, 518, 686
CviQI	GTAC	3 cut(s)	236, 292, 624
DdeI	CTNAG	5 cut(s)	146, 198, 253, 596, 627
DpnI	GATC	3 cut(s)	258, 450, 714
DpnII	GATC	3 cut(s)	256, 448, 712
EaeI	YGGCCR	2 cut(s)	319, 485
Eam1104I	CTCTTC	1 cut(s)	626
EarI	CTCTTC	1 cut(s)	626
Eco31I	GGTCTC	1 cut(s)	411
EcoRII	CCWGG	3 cut(s)	327, 373, 557
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	7 cut(s)	26, 68, 173, 195, 457, 521, 689
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	7 cut(s)	22, 64, 169, 191, 453, 517, 685
FauNDI	CATATG	2 cut(s)	42, 493
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	5 cut(s)	189, 393, 485, 522, 555
FokI	GGATG	3 cut(s)	245, 309, 581
Fsp4HI	GCNGC	5 cut(s)	189, 393, 485, 522, 555
FspBI	CTAG	2 cut(s)	5, 182
GluI	GCNGC	5 cut(s)	189, 393, 485, 522, 555
HaeIII	GGCC	3 cut(s)	196, 321, 487
HapII	CCGG	1 cut(s)	239
HgaI	GACGC	1 cut(s)	491
Hin1II	CATG	7 cut(s)	26, 68, 173, 195, 457, 521, 689
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	242, 278
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	155, 305
Hpy188I	TCNGA	3 cut(s)	37, 277, 369
Hpy188III	TCNNGA	6 cut(s)	70, 170, 282, 531, 566, 698
Hpy8I	GTNNAC	2 cut(s)	155, 305
HpyAV	CCTTC	1 cut(s)	427
HpyCH4V	TGCA	4 cut(s)	191, 386, 524, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 392
HpyF3I	CTNAG	5 cut(s)	146, 198, 253, 596, 627
Hsp92II	CATG	7 cut(s)	26, 68, 173, 195, 457, 521, 689
Kzo9I	GATC	3 cut(s)	256, 448, 712
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	4 cut(s)	175, 379, 508, 566
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	2 cut(s)	5, 182
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	3 cut(s)	258, 450, 714
MboI	GATC	3 cut(s)	256, 448, 712
MboII	GAAGA	3 cut(s)	77, 609, 643
MflI	RGATCY	2 cut(s)	256, 712
MhlI	GDGCHC	1 cut(s)	576
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	7 cut(s)	49, 59, 246, 534, 666, 692, 732
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	5 cut(s)	178, 346, 420, 525, 593
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	2 cut(s)	105, 336
Msp20I	TGGCCA	1 cut(s)	321
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	3 cut(s)	329, 375, 559
MvaI	CCWGG	3 cut(s)	329, 375, 559
MwoI	GCNNNNNNNGC	2 cut(s)	338, 392
NdeI	CATATG	2 cut(s)	42, 493
NdeII	GATC	3 cut(s)	256, 448, 712
NlaIII	CATG	7 cut(s)	26, 68, 173, 195, 457, 521, 689
NlaIV	GGNNCC	1 cut(s)	357
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	26
PagI	TCATGA	1 cut(s)	169
PciI	ACATGT	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	190, 394, 486, 523, 556
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PscI	ACATGT	1 cut(s)	22
Psp6I	CCWGG	3 cut(s)	327, 373, 557
PspGI	CCWGG	3 cut(s)	327, 373, 557
PspN4I	GGNNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	2 cut(s)	530, 587
PsuI	RGATCY	2 cut(s)	256, 712
RsaI	GTAC	3 cut(s)	237, 293, 625
RsaNI	GTAC	3 cut(s)	236, 292, 624
SaqAI	TTAA	2 cut(s)	105, 336
SatI	GCNGC	5 cut(s)	189, 393, 485, 522, 555
Sau3AI	GATC	3 cut(s)	256, 448, 712
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	329, 375, 559
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	522
Sse9I	AATT	7 cut(s)	49, 59, 246, 534, 666, 692, 732
SsiI	CCGC	2 cut(s)	289, 484
SspI	AATATT	2 cut(s)	109, 227
SspMI	CTAG	2 cut(s)	5, 182
StyD4I	CCNGG	3 cut(s)	327, 373, 557
TaqI	TCGA	1 cut(s)	697
TasI	AATT	7 cut(s)	49, 59, 246, 534, 666, 692, 732
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	105, 336
Tru9I	TTAA	2 cut(s)	105, 336
TscAI	CASTG	2 cut(s)	588, 652
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	4 cut(s)	188, 392, 521, 554
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	4 cut(s)	53, 77, 196, 420
TspRI	CASTG	2 cut(s)	588, 652
XapI	RAATTY	4 cut(s)	59, 534, 692, 732
XceI	RCATGY	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	304
XspI	CTAG	2 cut(s)	5, 182
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.