Rmu_sc0014364.1_g000001

Leishmanolysin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014364.1
OG0010930
Physical Location & Seq
Forward (+)
358 .. 2521
2164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014364.1_g000001.1.cds

Sequence Viewer

Length: 1050 bp
atggatgaaaagcttgggcggatggtaacccgtgtggtgcttccacgggttgtcatgcattcgcgatatcattatgcggcattctctgagaattttactggtttagagctagaagatgggggagggcgcggcacatcagggtcgcactgggaaaaaagacttctaatgaatgaaattatgacgggttcagtggatacaagatccgtggtttcaaaaatgacattggccttattagaagatagtggatggtaccatgctaattatagtatggcagacaatcttgattggggtcgcaaccaaggaactgagtttgttacttccccttgcaacgtctggaaaggggcatatcattgcaacacaacacaattgtcaggatgtacgtacaacagagaagcagaggggtactgtccaattgtaagttacagtggggacctgccccagtgggctcgctattttccacaggctaacaaaggtggacagtcttcgctggctgattattgcacctatttcgtagcttactctgatggatcatgtacagacactaacagtgcacgaccacctgacagaatgttgggtgaagtacgagggagcaactctaggtgtatggcctcatcattagtgcgttctgggtttgtgaggggttctatgacccaaggaaatggatgttatcagcacagatgtgtcaacaactcgttagaggttgctgtggatgggatgtggaaagtatgtcctgaagctggtggacaaattcagttcccaggatttaatggtgaattgatatgcccggcgtaccatgaactctgtggtactgggattgttcccgcgacagggcaatgtccaaattcttgtaatttgaatggcgactgtgttgaaggaagatgccactgttttctagggttccatggttctgattgtagcaaacgtaagcttctagctcctgtcccagcaactgtagtggacgtggaaactgcctatctaacgggatatgtgaatgtagaaatgggtacactggcattgattgctccactgattgattttcacatcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006323 GO:0006325 GO:0006338 GO:0006508 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007076 GO:0007088 GO:0007098 GO:0007100 GO:0007275 GO:0007276 GO:0007346 GO:0007399 GO:0007417 GO:0007420 GO:0007444 GO:0007548 GO:0008150 GO:0008152 GO:0008233 GO:0008354 GO:0008406 GO:0009888 GO:0009896 GO:0009987 GO:0010564 GO:0010638 GO:0010965 GO:0016043 GO:0016477 GO:0016787 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030071 GO:0030261 GO:0031023 GO:0031331 GO:0032270 GO:0032436 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0035295 GO:0040011 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0044703 GO:0045137 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0048285 GO:0048513 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048870 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051247 GO:0051276 GO:0051298 GO:0051299 GO:0051674 GO:0051704 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0060322 GO:0060429 GO:0061458 GO:0062033 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0090068 GO:0098813 GO:0140014 GO:0140096 GO:1901564 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902850 GO:1903047 GO:1903052 GO:1903364 GO:1905818 GO:1905820 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko05140 ko05143 map05140 map05143
Pfam Domains
Protein Families
EGF_2 Peptidase_M8

Protein Analysis

349

Amino Acids

38.18

Weight (kDa)

5.93

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42620 AT5G42620
fragaria_vesca FvH4_2g40290 FvH4_2g40290 FvH4_2g40290
malus_domestica MD08G1036300.v1.1
prunus_persica Prupe.1G383600_v2.0.a1
pyrus_communis pycom08g02900 pycom15g02830
rosa_chinensis RchiOBHm_Chr6g0300451
rosa_laevigata RLG00000011336
rosa_multiflora Rmu_sc0001670.1_g000004 Rmu_sc0014364.1_g000001
rosa_roxburghii Rroxscaffold_7G00167770
rosa_rugosa Rorug06G0296200
rosa_samantha Rh6AG408800 Rh6BG416000 Rh6CG423500 Rh6DG409200
rosa_wichuraiana Rw6G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 441
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 1 cut(s) 249
AccII CGCG 3 cut(s) 64, 129, 824
AciI CCGC 4 cut(s) 19, 77, 129, 822
AclWI GGATC 2 cut(s) 195, 535
AcsI RAATTY 3 cut(s) 91, 747, 841
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 9 cut(s) 251, 379, 383, 404, 535, 582, 791, 808, 1006
AfiI CCNNNNNNNGG 3 cut(s) 737, 827, 828
AgsI TTSAA 3 cut(s) 213, 856, 872
AjiI CACGTC 1 cut(s) 961
AjnI CCWGG 1 cut(s) 757
AleI CACNNNNGTG 1 cut(s) 678
AluBI AGCT 6 cut(s) 13, 109, 515, 737, 928, 935
AluI AGCT 6 cut(s) 13, 109, 515, 737, 928, 935
Alw21I GWGCWC 1 cut(s) 553
Alw44I GTGCAC 1 cut(s) 549
AlwI GGATC 2 cut(s) 195, 535
AlwNI CAGNNNCTG 1 cut(s) 950
AoxI GGCC 2 cut(s) 225, 606
ApaLI GTGCAC 1 cut(s) 549
ApoI RAATTY 3 cut(s) 91, 747, 841
Asp718I GGTACC 1 cut(s) 249
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 430
AsuC2I CCSGG 1 cut(s) 785
AsuHPI GGTGA 2 cut(s) 587, 782
AvaII GGWCC 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 249
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 553
BccI CCATC 5 cut(s) 16, 110, 240, 518, 704
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 785
BfaI CTAG 4 cut(s) 110, 597, 893, 932
BfmI CTRYAG 1 cut(s) 951
BfuAI ACCTGC 1 cut(s) 441
BfuI GTATCC 1 cut(s) 187
BisI GCNGC 2 cut(s) 78, 130
BlsI GCNGC 2 cut(s) 79, 131
Bme1390I CCNGG 2 cut(s) 759, 785
Bme18I GGWCC 1 cut(s) 430
BmgBI CACGTC 1 cut(s) 961
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 3 cut(s) 251, 431, 899
BmrFI CCNGG 2 cut(s) 759, 785
BmrI ACTGGG 3 cut(s) 157, 433, 819
BmsI GCATC 1 cut(s) 869
BmuI ACTGGG 3 cut(s) 157, 433, 819
BpiI GAAGAC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 785
BsaAI YACGTR 1 cut(s) 381
BsaJI CCNNGG 6 cut(s) 44, 204, 298, 652, 757, 901
Bsc4I CCNNNNNNNGG 3 cut(s) 737, 827, 828
Bse1I ACTGG 5 cut(s) 103, 152, 439, 814, 1014
Bse3DI GCAATG 2 cut(s) 349, 839
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 6 cut(s) 44, 204, 298, 652, 757, 901
BseGI GGATG 7 cut(s) 10, 27, 251, 380, 668, 715, 720
BseLI CCNNNNNNNGG 3 cut(s) 737, 827, 828
BseMI GCAATG 2 cut(s) 349, 839
BseMII CTCAG 2 cut(s) 78, 297
BseNI ACTGG 5 cut(s) 103, 152, 439, 814, 1014
BseSI GKGCMC 1 cut(s) 553
BseYI CCCAGC 1 cut(s) 943
Bsh1236I CGCG 3 cut(s) 64, 129, 824
BshFI GGCC 2 cut(s) 227, 608
BshNI GGYRCC 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 1 cut(s) 785
BslFI GGGAC 2 cut(s) 443, 926
BslI CCNNNNNNNGG 3 cut(s) 737, 827, 828
BsmFI GGGAC 2 cut(s) 443, 926
BsmI GAATGC 2 cut(s) 58, 80
BsnI GGCC 2 cut(s) 227, 608
Bsp1286I GDGCHC 2 cut(s) 448, 553
Bsp1407I TGTACA 1 cut(s) 533
Bsp143I GATC 2 cut(s) 200, 527
Bsp19I CCATGG 1 cut(s) 901
Bsp68I TCGCGA 1 cut(s) 64
BspACI CCGC 4 cut(s) 19, 77, 129, 822
BspANI GGCC 2 cut(s) 227, 608
BspCNI CTCAG 2 cut(s) 79, 298
BspFNI CGCG 3 cut(s) 64, 129, 824
BspLI GGNNCC 3 cut(s) 251, 431, 899
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 2 cut(s) 195, 535
BspT107I GGYRCC 1 cut(s) 249
BsrDI GCAATG 2 cut(s) 349, 839
BsrGI TGTACA 1 cut(s) 533
BsrI ACTGG 5 cut(s) 103, 152, 439, 814, 1014
BssECI CCNNGG 6 cut(s) 44, 204, 298, 652, 757, 901
BssMI GATC 2 cut(s) 200, 527
BssT1I CCWWGG 3 cut(s) 298, 652, 901
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 7 cut(s) 407, 425, 480, 548, 866, 887, 952
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstAUI TGTACA 1 cut(s) 533
BstBAI YACGTR 1 cut(s) 381
BstC8I GCNNGC 2 cut(s) 448, 489
BstDEI CTNAG 2 cut(s) 87, 306
BstDSI CCRYGG 3 cut(s) 44, 204, 901
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 7 cut(s) 10, 27, 251, 380, 668, 715, 720
BstFNI CGCG 3 cut(s) 64, 129, 824
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 2 cut(s) 203, 530
BstMBI GATC 2 cut(s) 200, 527
BstMWI GCNNNNNNNGC 1 cut(s) 1019
BstNI CCWGG 1 cut(s) 759
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 757, 783
BstSFI CTRYAG 1 cut(s) 951
BstSLI GKGCMC 1 cut(s) 553
BstSNI TACGTA 1 cut(s) 381
BstUI CGCG 3 cut(s) 64, 129, 824
BstV2I GAAGAC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 659
BstYI RGATCY 1 cut(s) 200
BsuI GTATCC 1 cut(s) 187
BsuRI GGCC 2 cut(s) 227, 608
BtgI CCRYGG 3 cut(s) 44, 204, 901
BtrI CACGTC 1 cut(s) 961
BtsCI GGATG 7 cut(s) 10, 27, 251, 380, 668, 715, 720
BtsIMutI CAGTG 8 cut(s) 145, 195, 430, 446, 553, 883, 1007, 1025
BtuMI TCGCGA 1 cut(s) 64
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 448, 489
CaiI CAGNNNCTG 1 cut(s) 950
CfoI GCGC 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 9 cut(s) 250, 378, 382, 403, 534, 581, 790, 807, 1005
CspCI CAANNNNNGTGG 4 cut(s) 186, 221, 936, 971
CviAII CATG 5 cut(s) 55, 254, 531, 794, 902
CviQI GTAC 9 cut(s) 250, 378, 382, 403, 534, 581, 790, 807, 1005
DdeI CTNAG 2 cut(s) 87, 306
DpnI GATC 2 cut(s) 202, 529
DpnII GATC 2 cut(s) 200, 527
EciI GGCGGA 1 cut(s) 34
Eco105I TACGTA 1 cut(s) 381
Eco130I CCWWGG 3 cut(s) 298, 652, 901
Eco24I GRGCYC 1 cut(s) 448
Eco32I GATATC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 757
EcoRV GATATC 1 cut(s) 68
EcoT14I CCWWGG 3 cut(s) 298, 652, 901
EcoT22I ATGCAT 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 3 cut(s) 298, 652, 901
FaeI CATG 5 cut(s) 58, 257, 534, 797, 905
FaqI GGGAC 2 cut(s) 443, 926
FatI CATG 5 cut(s) 54, 253, 530, 793, 901
FauI CCCGC 1 cut(s) 829
Fnu4HI GCNGC 2 cut(s) 78, 130
FokI GGATG 7 cut(s) 17, 34, 258, 387, 675, 722, 727
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 78, 130
FspBI CTAG 4 cut(s) 110, 597, 893, 932
GlaI GCGC 1 cut(s) 128
GluI GCNGC 2 cut(s) 78, 130
GsaI CCCAGC 1 cut(s) 947
HaeIII GGCC 2 cut(s) 227, 608
HapII CCGG 1 cut(s) 785
HhaI GCGC 1 cut(s) 129
Hin1II CATG 5 cut(s) 58, 257, 534, 797, 905
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 2 cut(s) 11, 926
HpaII CCGG 1 cut(s) 785
HphI GGTGA 2 cut(s) 587, 782
Hpy166II GTNNAC 6 cut(s) 476, 551, 685, 743, 958, 1007
Hpy188I TCNGA 3 cut(s) 88, 523, 910
Hpy188III TCNNGA 5 cut(s) 63, 281, 334, 372, 731
Hpy8I GTNNAC 6 cut(s) 476, 551, 685, 743, 958, 1007
HpyAV CCTTC 1 cut(s) 866
HpyCH4III ACNGT 7 cut(s) 407, 425, 480, 548, 866, 887, 952
HpyCH4IV ACGT 4 cut(s) 330, 380, 922, 960
HpyCH4V TGCA 5 cut(s) 58, 327, 354, 501, 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 1019
HpyF3I CTNAG 2 cut(s) 87, 306
HpySE526I ACGT 4 cut(s) 330, 380, 922, 960
Hsp92II CATG 5 cut(s) 58, 257, 534, 797, 905
HspAI GCGC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 200, 527
LmnI GCTCC 3 cut(s) 588, 940, 1027
LweI GCATC 1 cut(s) 869
MaeI CTAG 4 cut(s) 110, 597, 893, 932
MaeII ACGT 4 cut(s) 330, 380, 922, 960
MaeIII GTNAC 3 cut(s) 25, 313, 419
MalI GATC 2 cut(s) 202, 529
MboI GATC 2 cut(s) 200, 527
MboII GAAGA 4 cut(s) 125, 248, 474, 888
MfeI CAATTG 2 cut(s) 365, 411
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 2 cut(s) 448, 553
MluCI AATT 9 cut(s) 91, 174, 259, 365, 411, 747, 773, 841, 850
MnlI CCTC 6 cut(s) 116, 391, 578, 619, 630, 691
Mph1103I ATGCAT 1 cut(s) 60
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 1 cut(s) 678
MspI CCGG 1 cut(s) 785
MspR9I CCNGG 2 cut(s) 759, 785
MunI CAATTG 2 cut(s) 365, 411
Mva1269I GAATGC 2 cut(s) 58, 80
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 3 cut(s) 64, 129, 824
MwoI GCNNNNNNNGC 1 cut(s) 1019
NciI CCSGG 1 cut(s) 785
NcoI CCATGG 1 cut(s) 901
NdeII GATC 2 cut(s) 200, 527
NlaIII CATG 5 cut(s) 58, 257, 534, 797, 905
NlaIV GGNNCC 3 cut(s) 251, 431, 899
NruI TCGCGA 1 cut(s) 64
NsiI ATGCAT 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 678
PctI GAATGC 2 cut(s) 58, 80
PkrI GCNGC 2 cut(s) 79, 131
Ppu21I YACGTR 1 cut(s) 381
PpuMI RGGWCCY 1 cut(s) 430
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 757
PspEI GGTNACC 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 943
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 3 cut(s) 251, 431, 899
PspPI GGNCC 1 cut(s) 430
PspPPI RGGWCCY 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 950
PsuI RGATCY 1 cut(s) 200
RruI TCGCGA 1 cut(s) 64
RsaI GTAC 9 cut(s) 251, 379, 383, 404, 535, 582, 791, 808, 1006
RsaNI GTAC 9 cut(s) 250, 378, 382, 403, 534, 581, 790, 807, 1005
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 2 cut(s) 78, 130
Sau3AI GATC 2 cut(s) 200, 527
Sau96I GGNCC 1 cut(s) 430
ScrFI CCNGG 2 cut(s) 759, 785
SduI GDGCHC 2 cut(s) 448, 553
SfaNI GCATC 1 cut(s) 869
SfcI CTRYAG 1 cut(s) 951
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 678
SnaBI TACGTA 1 cut(s) 381
Sse9I AATT 9 cut(s) 91, 174, 259, 365, 411, 747, 773, 841, 850
SsiI CCGC 4 cut(s) 19, 77, 129, 822
SspMI CTAG 4 cut(s) 110, 597, 893, 932
StyD4I CCNGG 2 cut(s) 757, 783
StyI CCWWGG 3 cut(s) 298, 652, 901
TaaI ACNGT 7 cut(s) 407, 425, 480, 548, 866, 887, 952
TaiI ACGT 4 cut(s) 333, 383, 925, 963
TasI AATT 9 cut(s) 91, 174, 259, 365, 411, 747, 773, 841, 850
TatI WGTACW 1 cut(s) 533
TauI GCSGC 2 cut(s) 80, 132
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 8 cut(s) 152, 195, 430, 446, 553, 890, 1014, 1032
TspDTI ATGAA 4 cut(s) 21, 182, 186, 810
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 8 cut(s) 152, 195, 430, 446, 553, 890, 1014, 1032
VneI GTGCAC 1 cut(s) 549
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 3 cut(s) 91, 747, 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 800
XspI CTAG 4 cut(s) 110, 597, 893, 932
Zsp2I ATGCAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.