Rorug06G0296200

Leishmanolysin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010930
Physical Location & Seq
Reverse (-)
44881167 .. 44881569
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0296200.1

Sequence Viewer

Length: 318 bp
ATGGCACAAAATACTTGCAAGCCCAGTGTGGCTTTTGTCGTCACTGCTCTAGCTTTGGTCTTCAGTCTGACGTCATCATATACACCCTACCAATACCTGTTGTTTGTTCAACGGTGGCCAAAGCCTGTTTGTTATGATATCAACTGCCCTAACACTCCCCCTCCAATCATCACAGTACACGGTCTATGGCCATCGAACTATAATGGACCTCGCTTGAAGTGCTCAGGCGTTGTGACATTTAGTGAAACACTGATGAGTCACCAAATAGTACTAAAAGCAAACTTGGAACAACGGATGTGGAAAAGGGAAACCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000070 GO:0000226 GO:0000278 GO:0000280 GO:0000819 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006323 GO:0006325 GO:0006338 GO:0006508 GO:0006807 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0007076 GO:0007088 GO:0007098 GO:0007100 GO:0007275 GO:0007276 GO:0007346 GO:0007399 GO:0007417 GO:0007420 GO:0007444 GO:0007548 GO:0008150 GO:0008152 GO:0008233 GO:0008354 GO:0008406 GO:0009888 GO:0009896 GO:0009987 GO:0010564 GO:0010638 GO:0010965 GO:0016043 GO:0016477 GO:0016787 GO:0019538 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030071 GO:0030261 GO:0031023 GO:0031331 GO:0032270 GO:0032436 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0035295 GO:0040011 GO:0043170 GO:0044238 GO:0044424 GO:0044464 GO:0044703 GO:0045137 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0048285 GO:0048513 GO:0048518 GO:0048522 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048870 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051179 GO:0051247 GO:0051276 GO:0051298 GO:0051299 GO:0051674 GO:0051704 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0060322 GO:0060429 GO:0061458 GO:0062033 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0090068 GO:0098813 GO:0140014 GO:0140096 GO:1901564 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902850 GO:1903047 GO:1903052 GO:1903364 GO:1905818 GO:1905820 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko05140 ko05143 map05140 map05143
Pfam Domains
Protein Families
EGF_2 Peptidase_M8

Protein Analysis

105

Amino Acids

11.95

Weight (kDa)

9.24

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribonuclease_T2 PF00445 30 - 97 1.1e-07 Ribonuclease T2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G42620 AT5G42620
fragaria_vesca FvH4_2g40290 FvH4_2g40290 FvH4_2g40290
malus_domestica MD08G1036300.v1.1
prunus_persica Prupe.1G383600_v2.0.a1
pyrus_communis pycom08g02900 pycom15g02830
rosa_chinensis RchiOBHm_Chr6g0300451
rosa_laevigata RLG00000011336
rosa_multiflora Rmu_sc0001670.1_g000004 Rmu_sc0014364.1_g000001
rosa_roxburghii Rroxscaffold_7G00167770
rosa_rugosa Rorug06G0296200
rosa_samantha Rh6AG408800 Rh6BG416000 Rh6CG423500 Rh6DG409200
rosa_wichuraiana Rw6G035770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AcoI YGGCCR 2 cut(s) 116, 188
AcuI CTGAAG 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 2 cut(s) 177, 270
AgsI TTSAA 2 cut(s) 110, 217
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 2 cut(s) 116, 188
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 2 cut(s) 118, 190
BbsI GAAGAC 1 cut(s) 52
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 1 cut(s) 199
BfaI CTAG 1 cut(s) 50
BmcAI AGTACT 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 52
Bpu10I CCTNAGC 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse1I ACTGG 1 cut(s) 24
BseGI GGATG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 24
BshFI GGCC 2 cut(s) 118, 190
BsiHKAI GWGCWC 1 cut(s) 224
BsnI GGCC 2 cut(s) 118, 190
Bsp1286I GDGCHC 1 cut(s) 224
BspANI GGCC 2 cut(s) 118, 190
BspCNI CTCAG 1 cut(s) 236
BsrI ACTGG 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 114, 175, 182
BstACI GRCGYC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 300
BstMWI GCNNNNNNNGC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 52
BsuRI GGCC 2 cut(s) 118, 190
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 3 cut(s) 31, 42, 248
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 176, 269
CspCI CAANNNNNGTGG 2 cut(s) 278, 313
CviJI RGCY 6 cut(s) 22, 32, 53, 118, 124, 190
CviKI_1 RGCY 6 cut(s) 22, 32, 53, 118, 124, 190
CviQI GTAC 2 cut(s) 176, 269
DdeI CTNAG 1 cut(s) 223
EaeI YGGCCR 2 cut(s) 116, 188
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 46
EcoRV GATATC 1 cut(s) 139
FaiI YATR 7 cut(s) 79, 81, 135, 187, 201, 314, 316
FokI GGATG 1 cut(s) 307
FspBI CTAG 1 cut(s) 50
HaeIII GGCC 2 cut(s) 118, 190
Hin1I GRCGYC 1 cut(s) 71
HinfI GANTC 1 cut(s) 256
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 69
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 114, 175, 182
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 1 cut(s) 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 219
HpyF3I CTNAG 1 cut(s) 223
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 71
LpnPI CCDG 4 cut(s) 37, 110, 138, 210
MaeI CTAG 1 cut(s) 50
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 3 cut(s) 40, 232, 257
MboII GAAGA 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 224
MlsI TGGCCA 2 cut(s) 118, 190
MluNI TGGCCA 2 cut(s) 118, 190
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 2 cut(s) 171, 219
Mox20I TGGCCA 2 cut(s) 118, 190
MscI TGGCCA 2 cut(s) 118, 190
Msp20I TGGCCA 2 cut(s) 118, 190
MwoI GCNNNNNNNGC 1 cut(s) 219
NmuCI GTSAC 3 cut(s) 40, 232, 257
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PspPI GGNCC 1 cut(s) 206
RsaI GTAC 2 cut(s) 177, 270
RsaNI GTAC 2 cut(s) 176, 269
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 270
SchI GAGTC 1 cut(s) 265
SduI GDGCHC 1 cut(s) 224
SetI ASST 4 cut(s) 55, 74, 99, 211
SinI GGWCC 1 cut(s) 206
SspMI CTAG 1 cut(s) 50
TaaI ACNGT 3 cut(s) 114, 175, 182
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 194
TatI WGTACW 2 cut(s) 175, 268
TscAI CASTG 3 cut(s) 31, 49, 255
TseFI GTSAC 3 cut(s) 40, 232, 257
Tsp45I GTSAC 3 cut(s) 40, 232, 257
TspGWI ACGGA 1 cut(s) 307
TspRI CASTG 3 cut(s) 31, 49, 255
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 1 cut(s) 50
ZraI GACGTC 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.