Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014549.1

Orthogroup ID

OG0016695

Physical Location & Seq

Genomic Coordinates Reverse (-)

15985 .. 19832

Gene Structure 3848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014549.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3321 bp

atgcagatgaggattgctgagatatcaacgccggagctccggcaaagccacaacgactccccctcccaatcgcatccgcatcagcatcagcatctgatctcccagatcgaatcctcaatcaagcaaaccgagaacctctcccctgaaaacctcttacctgacacaatttccggcgatctccggccagccttgactcaattgagccaccacgctccgttcccaaactctctgaagctcgtgatctggaaactcagctatcgcctctggaacgcctgcgtcgatctctccaacaccacctccctccgctccctcccttcctccaaagccgaagagcacgccaagctccgccacatcgccgccgacctactctgcgtcgctggtgaagtttccggagttccttccccggcaatcaagtctgcctccttctaccacaagaccggagtcaaatggcacgagctccggaaattcgatcctcatttaccccaaaccaattcaaattcccgcgaaatgcagatgaggattgctgagatatcaacgccggagctccggcaaagccacaacgactccccctcccaatcgcatccgcatcagcatcagcatctgatctcccagatcgaatcctcaatcaagcaaaccgagaacctctcccctgaaaacctcttacctgacacaatttccggcgatctccggcgagccttgactcaattgagccaccacgctccgttccccaactctctgaagctcgtgatctggaaactcagctatcgcctctggaacgcctgcgtcgatctctccaacaccacctccctccgctccctcccttcctccaaagccgaagagcacgccaagctccgccacatcgccgccgacctactctgcgtcgctggtgaagtgtccggagttccttccccggcaatcaagtctgcctccttctaccacaagaccggagtcaaatggcacgagctccggaaattcgacctcgcttcgtcgtgcttcgagaaagcgaccgatctcctctcgaagatcgaaatcagcacggtctccgactccgaagagaagaagctatttctggatttgagtatcgccaggtcaagaaccgcctgggaagtatcggaccggaatcttgctgtggcgctgctgaaccgggccaagaacttgctattcgggtcgccggatcactacaaaaccctagccaatcagtactcgatgttcggaaagagcgcgctgtccaatagcgtgagtatttctctgaacgaagcattgaagctcatgaacgaggctctggagctatacgagaacggattgcgcgcggcgaggacacgcgacgagacggtggatctcaaggcgttaaggtcgaagacgctccggttcatcacggccgttcatttgcagatgaacgagttcgagagcgtgatcaaatgcgtgagggtgttgagagagggcgacgcaggtgatcagcaccctagccttccggtgatggcgatgaaggcctggttggggctggggaaggacggcgaggccgagaaggagctcaggggcatggttgtaaatgaaggcattcctgagggcgcttgggtgtcggcggtggaggcctactttgagtcagccgggacggctggagcagagacggcgaagggagtgtttttggggctgcttgggcggtgccacgtcagcgccagcgcggcagttagggtttctcacagggttcttggggagagttgcagcgagggatcaaaagtaagggctaaagtggtgtctgagcttgtatctgatgacagagtggtggctctcttctccggtgaggcagctgcgaagcagaggactgcaatgcattctgtgctttggaattgtgctgctgatcatttccggctaaaggattatgtaacaagtgcagacctgtttgagaaagcaatgctttatattccattcgacatagagaatcgaattctccgagccaagggcttcagagttttgtgtctctgccacctaggtctttcccaccttgatcaagctcaagaatacattaacgaggctgaaaagtacaagatttatcttcagaagaaagaccaggatggggctatttctcagattcaggcaatgacaacctgccttgattttacgccagactttctctcccttgcagcccatgaagctgttgcctgccgtactctttctattgctgttgctgctctatcaagtctgctgaacttttatgccccaggaaaatccatgccaacaagtgaagtcgtagttctgcgcaccttggtcacaatccttactcaagaacctgggaatgagcttgaagccctcaagtttgttcagcgtgttcatagccgggcatctgagcttggacctaattgctttttggggacaggggaggttggaaaacgggaaaggaattggtttgctgtgacttcatggaaccttgggacgaaaactggcactgagaaaaattatgaattatgtgccgaattctatagactggcatcagaattttattgtcttctggttgatgggcaggtaggagagaacatggtctgcaaagcactgatactgactatatctgcaattatagcttcagaaaatcagaagaagacaacattgcctgaaagtgaagtgaaacaagctgtacagcttctagatagagcagggaagatactgaagtcaaccttaccagggaatcaacttagcggtgatccagttaccaccattgaacctgacctatacttcatctacaccttttgtgcctatgacatatatggaaggctcaatgattcagaattacagctacaacttgtgaagacttttgctagttcaaaggcctgcaatcccaagttcctccttcagattggcctcactgcttcacaaggtccacaatccaatcatgaagtagcgacctttgctctaaatgaatgcctctcagttttcctctcttcctcctctccggactaccaaaatgtggctctgattgtccggaagctcattgctgtgaccagcattcacaaaggtgatacagatgatgatgctgtgtataacatgtacaagcaagcttacagaattatggtaggactgaaggacagtgagtatccgactgaagaaggaaaatggctagcgatgactgcatggaatagggcatcagtgcctgtgaggcttggccagattgatgcggcaaggaaatggatggatgtcggtatgcagctagctaagcatgttaatggaatggagacttatagggcgtgcatggaggatttcatttccagctttgagaagaaatttggggccccaaatgatggcgtaaacagacctcagctagtagtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007143 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032504 GO:0034641 GO:0035822 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048232 GO:0048285 GO:0048609 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071139 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPO22

Protein Analysis

1106

Amino Acids

122.67

Weight (kDa)

6.86

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48390
fragaria_vesca	FvH4_2g17460
malus_domestica	MD05G1153500.v1.1
prunus_persica	Prupe.8G186900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0282191
rosa_laevigata	RLG00000012903
rosa_multiflora	Rmu_sc0014549.1_g000008
rosa_roxburghii	Rroxscaffold_7G00186410
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259200 Rh6BG262500 Rh6CG261400 Rh6DG253500
rosa_wichuraiana	Rw6G022420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1439
Acc16I	TGCGCA	1 cut(s)	2258
Acc36I	ACCTGC	3 cut(s)	1439, 2114, 2509
AccB1I	GGYRCC	1 cut(s)	1662
AccB7I	CCANNNNNTGG	2 cut(s)	2959, 3290
AccBSI	CCGCTC	2 cut(s)	306, 813
AccII	CGCG	6 cut(s)	504, 1223, 1308, 1310, 1323, 1682
AccIII	TCCGGA	6 cut(s)	389, 459, 896, 966, 2944, 2973
AclWI	GGATC	5 cut(s)	464, 1182, 1344, 1738, 2690
AcoI	YGGCCR	3 cut(s)	182, 1377, 3154
AcsI	RAATTY	7 cut(s)	464, 496, 971, 1944, 2471, 2492, 3272
AcuI	CTGAAG	9 cut(s)	251, 758, 1948, 2039, 2562, 2681, 2828, 3092, 3114
AfaI	GTAC	5 cut(s)	1202, 2042, 2167, 2631, 3041
AfiI	CCNNNNNNNGG	7 cut(s)	1497, 1873, 1957, 2074, 2676, 2959, 3290
AflIII	ACRYGT	1 cut(s)	3036
AgsI	TTSAA	5 cut(s)	495, 1264, 2303, 2714, 2817
AjiI	CACGTC	1 cut(s)	1669
AjnI	CCWGG	7 cut(s)	1085, 1100, 1490, 2067, 2218, 2287, 2674
AjuI	GAANNNNNNNTTGG	2 cut(s)	1478, 1510
AleI	CACNNNNGTG	1 cut(s)	3006
Alw21I	GWGCWC	7 cut(s)	39, 336, 459, 546, 843, 966, 1533
Alw26I	GTCTC	5 cut(s)	1045, 1322, 1619, 1982, 3218
AlwI	GGATC	5 cut(s)	464, 1182, 1344, 1738, 2690
AlwNI	CAGNNNCTG	3 cut(s)	94, 601, 3143
Aor13HI	TCCGGA	6 cut(s)	389, 459, 896, 966, 2944, 2973
ApaI	GGGCCC	1 cut(s)	3283
ApeKI	GCWGC	9 cut(s)	1135, 1651, 1722, 1805, 1808, 1853, 2141, 2186, 3196
ApoI	RAATTY	7 cut(s)	464, 496, 971, 1944, 2471, 2492, 3272
Asp700I	GAANNNNTTC	2 cut(s)	1400, 1557
AspA2I	CCTAGG	1 cut(s)	1987
AspLEI	GCGC	9 cut(s)	1135, 1223, 1225, 1308, 1310, 1571, 1676, 1682, 2259
AspS9I	GGNCC	6 cut(s)	1114, 1146, 2351, 2870, 3279, 3280
AsuC2I	CCSGG	5 cut(s)	404, 911, 1145, 1609, 2336
AsuHPI	GGTGA	7 cut(s)	392, 899, 1463, 1486, 1811, 2705, 3020
AsuNHI	GCTAGC	2 cut(s)	3109, 3199
AvaII	GGWCC	3 cut(s)	1114, 2351, 2870
AvrII	CCTAGG	1 cut(s)	1987
AxyI	CCTNAGG	1 cut(s)	1563
BaeGI	GKGCMC	1 cut(s)	3283
BaeI	ACNNNNGTAYC	2 cut(s)	2648, 2681
BalI	TGGCCA	1 cut(s)	3156
BanI	GGYRCC	1 cut(s)	1662
BanII	GRGCYC	6 cut(s)	39, 459, 546, 966, 1533, 3283
BauI	CACGAG	4 cut(s)	236, 452, 743, 959
BbsI	GAAGAC	4 cut(s)	1364, 2495, 2600, 2807
Bbv12I	GWGCWC	7 cut(s)	39, 336, 459, 546, 843, 966, 1533
BbvCI	CCTCAGC	1 cut(s)	3306
BbvI	GCAGC	9 cut(s)	1122, 1638, 1734, 1795, 1817, 1840, 2153, 2173, 3208
BccI	CCATC	5 cut(s)	1471, 2066, 2507, 3175, 3284
BceAI	ACGGC	6 cut(s)	1364, 1392, 1528, 1629, 1644, 2148
BciT130I	CCWGG	7 cut(s)	1087, 1102, 1492, 2069, 2220, 2289, 2676
BciVI	GTATCC	1 cut(s)	3096
BclI	TGATCA	4 cut(s)	1413, 1453, 1858, 2005
BcnI	CCSGG	5 cut(s)	404, 911, 1145, 1609, 2336
BcoDI	GTCTC	5 cut(s)	1045, 1322, 1619, 1982, 3218
BfaI	CTAG	9 cut(s)	1190, 1464, 1988, 2639, 2811, 3110, 3200, 3311, 3319
BfmI	CTRYAG	1 cut(s)	2476
BfoI	RGCGCY	3 cut(s)	1136, 1572, 1677
BfuAI	ACCTGC	3 cut(s)	1439, 2114, 2509
BfuI	GTATCC	1 cut(s)	3096
BglI	GCCNNNNNGGC	3 cut(s)	1613, 1682, 3148
BlnI	CCTAGG	1 cut(s)	1987
BlpI	GCTNAGC	1 cut(s)	3204
BmcAI	AGTACT	1 cut(s)	1202
Bme18I	GGWCC	3 cut(s)	1114, 2351, 2870
BmgBI	CACGTC	1 cut(s)	1669
BmgT120I	GGNCC	6 cut(s)	1114, 1146, 2351, 2870, 3279, 3280
BmiI	GGNNCC	5 cut(s)	1664, 2423, 3280, 3281, 3282
BmtI	GCTAGC	2 cut(s)	3113, 3203
BoxI	GACNNNNGTC	2 cut(s)	440, 947
BpiI	GAAGAC	4 cut(s)	1364, 2495, 2600, 2807
BplI	GAGNNNNNCTC	6 cut(s)	122, 154, 629, 661, 1231, 1263
BpmI	CTGGAG	2 cut(s)	1304, 1638
Bpu10I	CCTNAGC	2 cut(s)	1532, 3306
Bpu1102I	GCTNAGC	1 cut(s)	3204
BpuEI	CTTGAG	4 cut(s)	1325, 1998, 2265, 2294
BpuMI	CCSGG	5 cut(s)	404, 911, 1145, 1609, 2336
BsaBI	GATNNNNATC	1 cut(s)	1028
BsaI	GGTCTC	1 cut(s)	1045
Bsc4I	CCNNNNNNNGG	7 cut(s)	1497, 1873, 1957, 2074, 2676, 2959, 3290
Bse1I	ACTGG	3 cut(s)	2443, 2487, 2699
Bse21I	CCTNAGG	1 cut(s)	1563
Bse3DI	GCAATG	5 cut(s)	1833, 1917, 2103, 2600, 2982
Bse8I	GATNNNNATC	1 cut(s)	1028
BseAI	TCCGGA	6 cut(s)	389, 459, 896, 966, 2944, 2973
BseBI	CCWGG	7 cut(s)	1087, 1102, 1492, 2069, 2220, 2289, 2676
BseGI	GGATG	5 cut(s)	73, 580, 2077, 3186, 3190
BseJI	GATNNNNATC	1 cut(s)	1028
BseLI	CCNNNNNNNGG	7 cut(s)	1497, 1873, 1957, 2074, 2676, 2959, 3290
BseMI	GCAATG	5 cut(s)	1833, 1917, 2103, 2600, 2982
BseNI	ACTGG	3 cut(s)	2443, 2487, 2699
BsePI	GCGCGC	2 cut(s)	1221, 1306
BseRI	GAGGAG	2 cut(s)	1004, 2929
BseSI	GKGCMC	1 cut(s)	3283
BseX3I	CGGCCG	1 cut(s)	1377
BseXI	GCAGC	9 cut(s)	1122, 1638, 1734, 1795, 1817, 1840, 2153, 2173, 3208
BseYI	CCCAGC	1 cut(s)	1501
BsgI	GTGCAG	1 cut(s)	1911
Bsh1236I	CGCG	6 cut(s)	504, 1223, 1308, 1310, 1323, 1682
Bsh1285I	CGRYCG	2 cut(s)	1008, 1380
BshNI	GGYRCC	1 cut(s)	1662
BsiEI	CGRYCG	2 cut(s)	1008, 1380
BsiHKAI	GWGCWC	7 cut(s)	39, 336, 459, 546, 843, 966, 1533
BslFI	GGGAC	3 cut(s)	1624, 2383, 2443
BslI	CCNNNNNNNGG	7 cut(s)	1497, 1873, 1957, 2074, 2676, 2959, 3290
BsmAI	GTCTC	5 cut(s)	1045, 1322, 1619, 1982, 3218
BsmBI	CGTCTC	2 cut(s)	1322, 1619
BsmFI	GGGAC	3 cut(s)	1624, 2383, 2443
BsmI	GAATGC	4 cut(s)	1557, 1831, 2918, 2997
Bso31I	GGTCTC	1 cut(s)	1045
Bsp120I	GGGCCC	1 cut(s)	3279
Bsp1286I	GDGCHC	8 cut(s)	39, 336, 459, 546, 843, 966, 1533, 3283
Bsp13I	TCCGGA	6 cut(s)	389, 459, 896, 966, 2944, 2973
Bsp1407I	TGTACA	2 cut(s)	2629, 3039
Bsp1720I	GCTNAGC	1 cut(s)	3204
BspEI	TCCGGA	6 cut(s)	389, 459, 896, 966, 2944, 2973
BspFNI	CGCG	6 cut(s)	504, 1223, 1308, 1310, 1323, 1682
BspHI	TCATGA	2 cut(s)	1269, 2884
BspLI	GGNNCC	5 cut(s)	1664, 2423, 3280, 3281, 3282
BspMI	ACCTGC	3 cut(s)	1439, 2114, 2509
BspOI	GCTAGC	2 cut(s)	3113, 3203
BspPI	GGATC	5 cut(s)	464, 1182, 1344, 1738, 2690
BspQI	GCTCTTC	2 cut(s)	324, 831
BspT107I	GGYRCC	1 cut(s)	1662
BspTNI	GGTCTC	1 cut(s)	1045
BsrBI	CCGCTC	2 cut(s)	306, 813
BsrDI	GCAATG	5 cut(s)	1833, 1917, 2103, 2600, 2982
BsrGI	TGTACA	2 cut(s)	2629, 3039
BsrI	ACTGG	3 cut(s)	2443, 2487, 2699
BssHII	GCGCGC	2 cut(s)	1221, 1306
BssSI	CACGAG	4 cut(s)	236, 452, 743, 959
BssT1I	CCWWGG	4 cut(s)	1956, 1987, 2262, 2425
Bst2BI	CACGAG	4 cut(s)	236, 452, 743, 959
Bst2UI	CCWGG	7 cut(s)	1087, 1102, 1492, 2069, 2220, 2289, 2676
Bst4CI	ACNGT	3 cut(s)	1039, 1333, 3080
Bst6I	CTCTTC	5 cut(s)	324, 831, 1047, 1796, 2938
BstAPI	GCANNNNNTGC	1 cut(s)	1837
BstAUI	TGTACA	2 cut(s)	2629, 3039
BstF5I	GGATG	5 cut(s)	73, 580, 2077, 3186, 3190
BstFNI	CGCG	6 cut(s)	504, 1223, 1308, 1310, 1323, 1682
BstH2I	RGCGCY	3 cut(s)	1136, 1572, 1677
BstHHI	GCGC	9 cut(s)	1135, 1223, 1225, 1308, 1310, 1571, 1676, 1682, 2259
BstMAI	GTCTC	5 cut(s)	1045, 1322, 1619, 1982, 3218
BstMCI	CGRYCG	2 cut(s)	1008, 1380
BstNI	CCWGG	7 cut(s)	1087, 1102, 1492, 2069, 2220, 2289, 2676
BstNSI	RCATGY	2 cut(s)	3040, 3212
BstPAI	GACNNNNGTC	2 cut(s)	440, 947
BstSFI	CTRYAG	1 cut(s)	2476
BstSLI	GKGCMC	1 cut(s)	3283
BstUI	CGCG	6 cut(s)	504, 1223, 1308, 1310, 1323, 1682
BstV1I	GCAGC	9 cut(s)	1122, 1638, 1734, 1795, 1817, 1840, 2153, 2173, 3208
BstV2I	GAAGAC	4 cut(s)	1364, 2495, 2600, 2807
BstX2I	RGATCY	1 cut(s)	1336
BstYI	RGATCY	1 cut(s)	1336
BstZI	CGGCCG	1 cut(s)	1377
Bsu36I	CCTNAGG	1 cut(s)	1563
BsuI	GTATCC	1 cut(s)	3096
BtgZI	GCGATG	4 cut(s)	337, 844, 1496, 3128
BtrI	CACGTC	1 cut(s)	1669
BtsCI	GGATG	5 cut(s)	73, 580, 2077, 3186, 3190
BtsI	GCAGTG	1 cut(s)	2856
BtsIMutI	CAGTG	5 cut(s)	2442, 2546, 2856, 3085, 3144
BveI	ACCTGC	3 cut(s)	1439, 2114, 2509
CaiI	CAGNNNCTG	3 cut(s)	94, 601, 3143
CciI	TCATGA	2 cut(s)	1269, 2884
CfoI	GCGC	9 cut(s)	1135, 1223, 1225, 1308, 1310, 1571, 1676, 1682, 2259
Cfr13I	GGNCC	6 cut(s)	1114, 1146, 2351, 2870, 3279, 3280
CpoI	CGGWCCG	1 cut(s)	1114
CseI	GACGC	6 cut(s)	265, 361, 772, 868, 1369, 1454
Csp6I	GTAC	5 cut(s)	1201, 2041, 2166, 2630, 3040
CspI	CGGWCCG	1 cut(s)	1114
CviQI	GTAC	5 cut(s)	1201, 2041, 2166, 2630, 3040
EaeI	YGGCCR	3 cut(s)	182, 1377, 3154
EagI	CGGCCG	1 cut(s)	1377
Eam1104I	CTCTTC	5 cut(s)	324, 831, 1047, 1796, 2938
EarI	CTCTTC	5 cut(s)	324, 831, 1047, 1796, 2938
EciI	GGCGGA	2 cut(s)	335, 842
Ecl136II	GAGCTC	5 cut(s)	37, 457, 544, 964, 1531
EclXI	CGGCCG	1 cut(s)	1377
Eco130I	CCWWGG	4 cut(s)	1956, 1987, 2262, 2425
Eco147I	AGGCCT	3 cut(s)	1490, 1592, 2822
Eco24I	GRGCYC	6 cut(s)	39, 459, 546, 966, 1533, 3283
Eco31I	GGTCTC	1 cut(s)	1045
Eco32I	GATATC	2 cut(s)	24, 531
Eco47I	GGWCC	3 cut(s)	1114, 2351, 2870
Eco52I	CGGCCG	1 cut(s)	1377
Eco53kI	GAGCTC	5 cut(s)	37, 457, 544, 964, 1531
Eco57I	CTGAAG	9 cut(s)	251, 758, 1948, 2039, 2562, 2681, 2828, 3092, 3114
Eco81I	CCTNAGG	1 cut(s)	1563
EcoICRI	GAGCTC	5 cut(s)	37, 457, 544, 964, 1531
EcoO109I	RGGNCCY	2 cut(s)	3279, 3280
EcoRI	GAATTC	2 cut(s)	1944, 2471
EcoRII	CCWGG	7 cut(s)	1085, 1100, 1490, 2067, 2218, 2287, 2674
EcoRV	GATATC	2 cut(s)	24, 531
EcoT14I	CCWWGG	4 cut(s)	1956, 1987, 2262, 2425
EcoT22I	ATGCAT	1 cut(s)	1833
EcoT38I	GRGCYC	6 cut(s)	39, 459, 546, 966, 1533, 3283
ErhI	CCWWGG	4 cut(s)	1956, 1987, 2262, 2425
Esp3I	CGTCTC	2 cut(s)	1322, 1619
FalI	AAGNNNNNCTT	4 cut(s)	1899, 1931, 2654, 2686
FaqI	GGGAC	3 cut(s)	1624, 2383, 2443
FauI	CCCGC	1 cut(s)	509
FbaI	TGATCA	4 cut(s)	1413, 1453, 1858, 2005
FokI	GGATG	5 cut(s)	60, 567, 2084, 3193, 3197
FriOI	GRGCYC	6 cut(s)	39, 459, 546, 966, 1533, 3283
FspBI	CTAG	9 cut(s)	1190, 1464, 1988, 2639, 2811, 3110, 3200, 3311, 3319
FspI	TGCGCA	1 cut(s)	2258
GlaI	GCGC	9 cut(s)	1134, 1222, 1224, 1307, 1309, 1570, 1675, 1681, 2258
GsaI	CCCAGC	1 cut(s)	1505
GsuI	CTGGAG	2 cut(s)	1304, 1638
HaeII	RGCGCY	3 cut(s)	1136, 1572, 1677
HgaI	GACGC	6 cut(s)	265, 361, 772, 868, 1369, 1454
HhaI	GCGC	9 cut(s)	1135, 1223, 1225, 1308, 1310, 1571, 1676, 1682, 2259
Hin6I	GCGC	9 cut(s)	1133, 1221, 1223, 1306, 1308, 1569, 1674, 1680, 2257
HinP1I	GCGC	9 cut(s)	1133, 1221, 1223, 1306, 1308, 1569, 1674, 1680, 2257
HincII	GTYRAC	1 cut(s)	2667
HindII	GTYRAC	1 cut(s)	2667
HindIII	AAGCTT	1 cut(s)	3048
HphI	GGTGA	7 cut(s)	392, 899, 1463, 1486, 1811, 2705, 3020
Hpy166II	GTNNAC	3 cut(s)	2667, 2873, 3298
Hpy8I	GTNNAC	3 cut(s)	2667, 2873, 3298
Hpy99I	CGWCG	7 cut(s)	281, 377, 788, 884, 991, 1328, 1448
HpyCH4III	ACNGT	3 cut(s)	1039, 1333, 3080
HpyCH4IV	ACGT	1 cut(s)	1668
HpySE526I	ACGT	1 cut(s)	1668
HspAI	GCGC	9 cut(s)	1133, 1221, 1223, 1306, 1308, 1569, 1674, 1680, 2257
Kpn2I	TCCGGA	6 cut(s)	389, 459, 896, 966, 2944, 2973
Ksp22I	TGATCA	4 cut(s)	1413, 1453, 1858, 2005
LguI	GCTCTTC	2 cut(s)	324, 831
Lsp1109I	GCAGC	9 cut(s)	1122, 1638, 1734, 1795, 1817, 1840, 2153, 2173, 3208
MaeI	CTAG	9 cut(s)	1190, 1464, 1988, 2639, 2811, 3110, 3200, 3311, 3319
MaeII	ACGT	1 cut(s)	1668
MaeIII	GTNAC	5 cut(s)	1882, 2266, 2410, 2701, 2989
MbiI	CCGCTC	2 cut(s)	306, 813
MfeI	CAATTG	2 cut(s)	197, 704
MflI	RGATCY	1 cut(s)	1336
MhlI	GDGCHC	8 cut(s)	39, 336, 459, 546, 843, 966, 1533, 3283
MlsI	TGGCCA	1 cut(s)	3156
MluNI	TGGCCA	1 cut(s)	3156
MlyI	GAGTC	8 cut(s)	50, 187, 450, 557, 694, 957, 1040, 1610
MmeI	TCCRAC	5 cut(s)	312, 819, 1068, 2362, 3113
Mox20I	TGGCCA	1 cut(s)	3156
Mph1103I	ATGCAT	1 cut(s)	1833
MroI	TCCGGA	6 cut(s)	389, 459, 896, 966, 2944, 2973
MroXI	GAANNNNTTC	2 cut(s)	1400, 1557
MscI	TGGCCA	1 cut(s)	3156
MseI	TTAA	3 cut(s)	1349, 2025, 3213
MslI	CAYNNNNRTG	3 cut(s)	2987, 3006, 3213
Msp20I	TGGCCA	1 cut(s)	3156
MspA1I	CMGCKG	1 cut(s)	1808
MunI	CAATTG	2 cut(s)	197, 704
Mva1269I	GAATGC	4 cut(s)	1557, 1831, 2918, 2997
MvaI	CCWGG	7 cut(s)	1087, 1102, 1492, 2069, 2220, 2289, 2676
MvnI	CGCG	6 cut(s)	504, 1223, 1308, 1310, 1323, 1682
NciI	CCSGG	5 cut(s)	404, 911, 1145, 1609, 2336
NheI	GCTAGC	2 cut(s)	3109, 3199
NlaIV	GGNNCC	5 cut(s)	1664, 2423, 3280, 3281, 3282
NmeAIII	GCCGAG	1 cut(s)	1546
NmuCI	GTSAC	3 cut(s)	2266, 2410, 2989
NsbI	TGCGCA	1 cut(s)	2258
NsiI	ATGCAT	1 cut(s)	1833
NspI	RCATGY	2 cut(s)	3040, 3212
OliI	CACNNNNGTG	1 cut(s)	3006
PagI	TCATGA	2 cut(s)	1269, 2884
PaqCI	CACCTGC	1 cut(s)	1439
PauI	GCGCGC	2 cut(s)	1221, 1306
PceI	AGGCCT	3 cut(s)	1490, 1592, 2822
PciI	ACATGT	1 cut(s)	3036
PciSI	GCTCTTC	2 cut(s)	324, 831
PcsI	WCGNNNNNNNCGW	4 cut(s)	276, 783, 1518, 1948
PctI	GAATGC	4 cut(s)	1557, 1831, 2918, 2997
PdmI	GAANNNNTTC	2 cut(s)	1400, 1557
PfeI	GAWTC	7 cut(s)	110, 617, 1120, 1939, 2089, 2680, 2774
PflMI	CCANNNNNTGG	2 cut(s)	2959, 3290
PleI	GAGTC	8 cut(s)	50, 187, 449, 557, 694, 956, 1040, 1609
PpsI	GAGTC	8 cut(s)	50, 187, 449, 557, 694, 956, 1040, 1609
PscI	ACATGT	1 cut(s)	3036
PshAI	GACNNNNGTC	2 cut(s)	440, 947
Psp124BI	GAGCTC	5 cut(s)	39, 459, 546, 966, 1533
Psp6I	CCWGG	7 cut(s)	1085, 1100, 1490, 2067, 2218, 2287, 2674
PspFI	CCCAGC	1 cut(s)	1501
PspGI	CCWGG	7 cut(s)	1085, 1100, 1490, 2067, 2218, 2287, 2674
PspN4I	GGNNCC	5 cut(s)	1664, 2423, 3280, 3281, 3282
PspOMI	GGGCCC	1 cut(s)	3279
PspPI	GGNCC	6 cut(s)	1114, 1146, 2351, 2870, 3279, 3280
PsrI	GAACNNNNNNTAC	2 cut(s)	1193, 1225
PstNI	CAGNNNCTG	3 cut(s)	94, 601, 3143
PsuI	RGATCY	1 cut(s)	1336
PteI	GCGCGC	2 cut(s)	1221, 1306
PvuII	CAGCTG	1 cut(s)	1808
RsaI	GTAC	5 cut(s)	1202, 2042, 2167, 2631, 3041
RsaNI	GTAC	5 cut(s)	1201, 2041, 2166, 2630, 3040
RseI	CAYNNNNRTG	3 cut(s)	2987, 3006, 3213
Rsr2I	CGGWCCG	1 cut(s)	1114
RsrII	CGGWCCG	1 cut(s)	1114
SacI	GAGCTC	5 cut(s)	39, 459, 546, 966, 1533
SapI	GCTCTTC	2 cut(s)	324, 831
SaqAI	TTAA	3 cut(s)	1349, 2025, 3213
Sau96I	GGNCC	6 cut(s)	1114, 1146, 2351, 2870, 3279, 3280
ScaI	AGTACT	1 cut(s)	1202
SchI	GAGTC	8 cut(s)	50, 187, 450, 557, 694, 957, 1040, 1610
SduI	GDGCHC	8 cut(s)	39, 336, 459, 546, 843, 966, 1533, 3283
SfcI	CTRYAG	1 cut(s)	2476
SinI	GGWCC	3 cut(s)	1114, 2351, 2870
SmiMI	CAYNNNNRTG	3 cut(s)	2987, 3006, 3213
SmlI	CTYRAG	4 cut(s)	1340, 2013, 2280, 2309
SmoI	CTYRAG	4 cut(s)	1340, 2013, 2280, 2309
SseBI	AGGCCT	3 cut(s)	1490, 1592, 2822
SspMI	CTAG	9 cut(s)	1190, 1464, 1988, 2639, 2811, 3110, 3200, 3311, 3319
SstI	GAGCTC	5 cut(s)	39, 459, 546, 966, 1533
StuI	AGGCCT	3 cut(s)	1490, 1592, 2822
StyI	CCWWGG	4 cut(s)	1956, 1987, 2262, 2425
TaaI	ACNGT	3 cut(s)	1039, 1333, 3080
TaiI	ACGT	1 cut(s)	1671
TaqII	GACCGA	1 cut(s)	1022
TatI	WGTACW	4 cut(s)	1200, 2040, 2629, 3039
TauI	GCSGC	5 cut(s)	359, 866, 1313, 1685, 3170
TfiI	GAWTC	7 cut(s)	110, 617, 1120, 1939, 2089, 2680, 2774
Tru1I	TTAA	3 cut(s)	1349, 2025, 3213
Tru9I	TTAA	3 cut(s)	1349, 2025, 3213
TscAI	CASTG	5 cut(s)	2449, 2553, 2863, 3085, 3144
TseFI	GTSAC	3 cut(s)	2266, 2410, 2989
TseI	GCWGC	9 cut(s)	1135, 1651, 1722, 1805, 1808, 1853, 2141, 2186, 3196
Tsp45I	GTSAC	3 cut(s)	2266, 2410, 2989
TspGWI	ACGGA	3 cut(s)	204, 711, 1314
TspRI	CASTG	5 cut(s)	2449, 2553, 2863, 3085, 3144
Van91I	CCANNNNNTGG	2 cut(s)	2959, 3290
VpaK11BI	GGWCC	3 cut(s)	1114, 2351, 2870
XapI	RAATTY	7 cut(s)	464, 496, 971, 1944, 2471, 2492, 3272
XbaI	TCTAGA	1 cut(s)	2638
XceI	RCATGY	2 cut(s)	3040, 3212
XmaJI	CCTAGG	1 cut(s)	1987
XmnI	GAANNNNTTC	2 cut(s)	1400, 1557
XspI	CTAG	9 cut(s)	1190, 1464, 1988, 2639, 2811, 3110, 3200, 3311, 3319
ZrmI	AGTACT	1 cut(s)	1202
Zsp2I	ATGCAT	1 cut(s)	1833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.