Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016695

Physical Location & Seq

Genomic Coordinates Reverse (-)

25742637 .. 25747376

Gene Structure 4740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3072 bp

ATGCCATTAAATCCCACCACAAAGAGGGAAAGATCAAAACCCTCCAATTATGTTTCGATCCGTCCGATGTTGAGTTTCTTCTTGAGAAGCGAGGTTGATCCGACGGACACGATCATTGAGGTTGTGTTCAAGAACCGTGTCCATAATCGATGGGTCTCGGATTATGGGTGGAAGCACGATGAAGACGAAGATGAAGCTCGGATTCGGACCAAATATGGGATGATTGCGATCTGGGGAAGGATGAGGATCGCCGAGATATCAACGCCGGAGCTCCGGCAAAGCCACAATGAGTCCCCCTCCCAATCGCAACCGCATCAGCACCTGATCTCCCAGATCGAATCCTCAATCAAGCAAACCGAGAACCTCTCTCCTGAAAAACTCATACCGGACACAATTTCCGGCGATCTCCGGCGAGCCTTGACTCAATTGAGCCACCACGCTCCCTTCCCCAACTCTCTCAAGCTCGTTATCTGGAAACTCAGTTATCGCCTCTGGAACGCCTGCGTCGATCTCTCCAATACCACCTCCCTCCGCTCCCTCCCTTCCTCCAAAGCCGAAGAGCACGCCAAGCTCCGCCACATCGCCGCCGACCTACTCTGCGTCGCCGGTGAAGTGTCCGGCGTACCTTCCCCGGCGATCAAGTCCGCCTCCTTCTACCATAAGACCGGAGTCAAATGGCACGAACTCCGGAAATTCGACCTCGCTTCGTCGTGCTTCGAGAAAGCCACCGATCTCCTGTCGAAGATCGAAATCAGCACGGTCTCCGACTCCGGAGAGAAGAAGCTATTTCTGGAATTGAGTATCGCCAGGTCAAGAACCGCCTGGGAAGTATCGGACCGGAATCTCGCGGTGGCGCTGCTGAACCGGGCCAAGAGCTTGCTATTCGGGTCGCCGGATCACTACAAAACCCTAGCCAATCAGTATTCGATGTTCGGAAAGCGCGCGCTGTCCAATAGCGAGAGTAGTTCTCTGAACGAAGCGTTGAAGCTCATGAGCGAGGCTCTGGAGCTCTACGAGACGGGATTGCTTGCGGCGAGGACACGCGACGAGACGGTGGATCTCAAGGCGTCAAGGTCGAAGACGCTCCGGTTCATCTCTGCCGTTCATTTGCAGATGAACGAGTTCGAGAGCGTGATCAAATGCGTGAGGGTGTTGAGAGAAGGCGACGCAGGTGATCAGCACCCTAGCCTTCCGGTGATGGCAATGAAGGCGTGGTTGGGGCTGGGGAAGTACGGCGAGGCCGAGAAGGAGCTCAGGGGCATGGTGGTAAATGAAGGTATTCCTGAGGGCGTTTGGGTGTCGGCGGTGGAGGCCTACTTTGAGTCAGCCGGGACGGCTGGAGCAGAGACGGCGAAGGGAGTGTTTTTGGGGCTGCTTGGGAGGTGCCACGTCAGCGCCAGCGCGGCGGTTAGGGTTTCTCACAGGGTTCTTGGGGAGAGTTGCAGCGAGGGATCAAAAGTGAGGGCTAGGGTGGTGTCGGAGCTTGTGTCTGATGACAGAGTGGTGGCTCTCTTCTCCGGTGAGGCAGCTGCGAAGCAGAGGATTGCAATGCATTCTGTGCTTTGGAATTGTGCTGCTGATCATTTCCGGCTAAAAGATTATGTAACAAGTGCAGACCTGTTTGAGAAAGCAATGCTTTATATACCATTCGACATAGAGAATCGAATTCTCCGGGCCAAGGGCTTCAGAGTTTTGTGTCTCTGCCACCTAGGTCTTTCCCACCTTGATCAAGCTCAAGAATACATTAACGAGGCTGAAAAGCTTGAGCCTAACATAGCTTCAGCTTTCCTGAAGTACAAGATTTATCTTCAGAAGAAAGACCAGGATGGGGCTATTACTCAGATTCAGGCAATGACAACCTGCCTTGATTTTACGCCGGACTTTCTCTCCCTTGCAGCCCATGAAGCTGTTGCCTGCCGTGCTCTTTCTATTGCTGTTGCTGCTCTATCAAGTCTGCTGAACTTTTATGCCCCAGGAAAATCCATGCCAACAAGTGAAGTCGTAGTTCTGCGCACCTTGGTCACAATCCTTACTCAAGAACCTGGGAATGAGCTTGAAGCCCTCAAGTTTGTTAAGCGTGTTCATAACCGGGCATCTGAGCTTGGACCTAATTGCTTTTTTGGGACAGGGGAGGTTGGAAAACGGGAAAGGAATTGGTTTGCTGTGACTTCATGGAACCTTGGGACGAAAACTGGCACTGAGAAAAATTATGAATTATGTGCGGAATTCTATAGACTGGCATCAGAATTTTATTGTCTTCTGGTTGATGGGCAGGTAGGAGAAAACATGGTCTGCAAAGCACTGATACTGACTATATCTGCAATTATAGCTTCAGAAAATCAGAAGACAACATTGCCTGAAAGTGAAGTGAAACAAGCTGTACAGCTTCTAGATAGAGCAGGGAAGATACTGAAGTCAACCTTACCAGGGAATCAACTTAGCGGTGATCCAGTTACCACCATTGAACCTGATCTATACTTCATCTACACCTTTTGTGCCTATGACATATATGGAAGGCTCAATGATTCAGGATTACAGCTACAACTTGTGAAGACTTTTGCTAGTTCAAAGGCCTGCAATCCCAAGTTCCTCCTTCAGATTGGCCTCACTGCTTCACAAGGTCCACAGTCCAATCACAAAGTAGCGACCTTTGCTCTAAATGAATGCCTCTCGGTTTTCCTTTCTTCCTCCTCTCCAGACTACCAAAATGTGGCTCTGATTGTCCGCAAGCTCATTGCTGTGACCAGCATTCACAAAGGTGATACAGATGATGATGCTGTGTATAACATGTACAAGCAAGCTTACAGAATTATGGTGGGACTGAAGGACAGAGAGTATCCGACTGAAGAGGGAAAATGGCTAGCGATGACTGCATGGAATAGGGCATCAGTGCCTGTGAGGCTTGGCCAGATTGATGCGGCAAGGAAATGGATGGATGTCGGTATGCAGCTAGCTAAGCATGTTAATGGAATGGAGACTTACAGGGCATGCATGGAGGATTTCATTACCAGCTTTGAGAAGAAATTTGGTGCCCCAAATGATGGCGTAAACAGACCTCAGCTAGTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006310 GO:0006311 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007140 GO:0007143 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032504 GO:0034641 GO:0035822 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048232 GO:0048285 GO:0048609 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0051704 GO:0061982 GO:0070192 GO:0071139 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SPO22

Protein Analysis

1023

Amino Acids

113.88

Weight (kDa)

7.95

Isoelectric Point (pI)

43.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPO22	PF08631	273 - 545	2.6e-33	Meiosis protein SPO22/ZIP4 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016695)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48390
fragaria_vesca	FvH4_2g17460
malus_domestica	MD05G1153500.v1.1
prunus_persica	Prupe.8G186900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0282191
rosa_laevigata	RLG00000012903
rosa_multiflora	Rmu_sc0014549.1_g000008
rosa_roxburghii	Rroxscaffold_7G00186410
rosa_rugosa	Rorug06G0146100
rosa_samantha	Rh6AG259200 Rh6BG262500 Rh6CG261400 Rh6DG253500
rosa_wichuraiana	Rw6G022420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1160
Acc16I	TGCGCA	1 cut(s)	2012
Acc36I	ACCTGC	3 cut(s)	1160, 1868, 2263
AccB1I	GGYRCC	2 cut(s)	1383, 3029
AccB7I	CCANNNNNTGG	2 cut(s)	2710, 3041
AccBSI	CCGCTC	1 cut(s)	534
AccII	CGCG	5 cut(s)	848, 942, 944, 1044, 1403
AccIII	TCCGGA	2 cut(s)	687, 770
AclWI	GGATC	7 cut(s)	52, 92, 254, 903, 1065, 1459, 2441
AcoI	YGGCCR	1 cut(s)	2905
AcsI	RAATTY	5 cut(s)	692, 1665, 2225, 2246, 3023
AcuI	CTGAAG	9 cut(s)	1669, 1764, 1793, 1811, 2316, 2432, 2579, 2843, 2865
AcyI	GRCGYC	1 cut(s)	1067
AfaI	GTAC	5 cut(s)	624, 1232, 1796, 2382, 2792
AfiI	CCNNNNNNNGG	7 cut(s)	24, 216, 1678, 1828, 2427, 2710, 3041
AflIII	ACRYGT	1 cut(s)	2787
AgsI	TTSAA	5 cut(s)	130, 985, 2057, 2465, 2568
AjiI	CACGTC	1 cut(s)	1390
AjnI	CCWGG	6 cut(s)	806, 821, 1821, 1972, 2041, 2425
AjuI	GAANNNNNNNTTGG	2 cut(s)	1199, 1231
AleI	CACNNNNGTG	1 cut(s)	2757
Alw21I	GWGCWC	5 cut(s)	273, 564, 1011, 1254, 1924
Alw26I	GTCTC	7 cut(s)	160, 766, 1010, 1043, 1340, 1703, 2969
AlwI	GGATC	7 cut(s)	52, 92, 254, 903, 1065, 1459, 2441
AlwNI	CAGNNNCTG	2 cut(s)	322, 2894
Aor13HI	TCCGGA	2 cut(s)	687, 770
AoxI	GGCC	7 cut(s)	867, 1239, 1311, 1674, 2571, 2602, 2905
ApeKI	GCWGC	9 cut(s)	856, 1372, 1443, 1526, 1529, 1574, 1895, 1940, 2947
ApoI	RAATTY	5 cut(s)	692, 1665, 2225, 2246, 3023
Asp700I	GAANNNNTTC	2 cut(s)	1121, 1278
AspA2I	CCTAGG	1 cut(s)	1708
AspLEI	GCGC	7 cut(s)	856, 942, 944, 946, 1397, 1403, 2013
AspS9I	GGNCC	6 cut(s)	207, 835, 867, 1674, 2105, 2621
AsuC2I	CCSGG	5 cut(s)	632, 866, 1330, 1673, 2090
AsuHPI	GGTGA	6 cut(s)	620, 1184, 1207, 1532, 2456, 2771
AsuNHI	GCTAGC	2 cut(s)	2860, 2950
AvaII	GGWCC	4 cut(s)	207, 835, 2105, 2621
AvrII	CCTAGG	1 cut(s)	1708
AxyI	CCTNAGG	1 cut(s)	1284
BaeGI	GKGCMC	1 cut(s)	3034
BaeI	ACNNNNGTAYC	2 cut(s)	2399, 2432
BalI	TGGCCA	1 cut(s)	2907
BanI	GGYRCC	2 cut(s)	1383, 3029
BanII	GRGCYC	3 cut(s)	273, 1011, 1254
BbsI	GAAGAC	5 cut(s)	189, 1085, 2249, 2351, 2558
Bbv12I	GWGCWC	5 cut(s)	273, 564, 1011, 1254, 1924
BbvCI	CCTCAGC	1 cut(s)	3057
BbvI	GCAGC	9 cut(s)	843, 1359, 1455, 1516, 1538, 1561, 1907, 1927, 2959
BccI	CCATC	6 cut(s)	144, 1192, 1820, 2261, 2926, 3035
BceAI	ACGGC	5 cut(s)	1085, 1249, 1350, 1365, 1902
BciT130I	CCWGG	6 cut(s)	808, 823, 1823, 1974, 2043, 2427
BciVI	GTATCC	1 cut(s)	2847
BclI	TGATCA	4 cut(s)	1134, 1174, 1579, 1726
BcnI	CCSGG	5 cut(s)	632, 866, 1330, 1673, 2090
BcoDI	GTCTC	7 cut(s)	160, 766, 1010, 1043, 1340, 1703, 2969
BfmI	CTRYAG	1 cut(s)	2230
BfoI	RGCGCY	2 cut(s)	857, 1398
BfuAI	ACCTGC	3 cut(s)	1160, 1868, 2263
BfuI	GTATCC	1 cut(s)	2847
BglI	GCCNNNNNGGC	3 cut(s)	1334, 1403, 2899
BlnI	CCTAGG	1 cut(s)	1708
BlpI	GCTNAGC	1 cut(s)	2955
Bme18I	GGWCC	4 cut(s)	207, 835, 2105, 2621
BmgBI	CACGTC	1 cut(s)	1390
BmgT120I	GGNCC	6 cut(s)	207, 835, 867, 1674, 2105, 2621
BmiI	GGNNCC	3 cut(s)	1385, 2177, 3031
BmsI	GCATC	6 cut(s)	322, 2102, 2249, 2764, 2894, 2905
BmtI	GCTAGC	2 cut(s)	2864, 2954
BoxI	GACNNNNGTC	1 cut(s)	668
BpiI	GAAGAC	5 cut(s)	189, 1085, 2249, 2351, 2558
BplI	GAGNNNNNCTC	8 cut(s)	281, 313, 350, 382, 952, 984, 985, 1017
BpmI	CTGGAG	3 cut(s)	1025, 1359, 2679
Bpu10I	CCTNAGC	2 cut(s)	1253, 3057
Bpu1102I	GCTNAGC	1 cut(s)	2955
BpuEI	CTTGAG	7 cut(s)	103, 443, 1046, 1719, 1784, 2019, 2048
BpuMI	CCSGG	5 cut(s)	632, 866, 1330, 1673, 2090
Bsa29I	ATCGAT	1 cut(s)	148
BsaBI	GATNNNNATC	3 cut(s)	227, 245, 749
BsaHI	GRCGYC	1 cut(s)	1067
BsaI	GGTCTC	2 cut(s)	160, 766
BsaJI	CCNNGG	9 cut(s)	630, 822, 1677, 1708, 1972, 2016, 2042, 2179, 2426
BsaWI	WCCGGW	8 cut(s)	385, 665, 687, 770, 837, 1086, 1192, 1517
BsaXI	ACNNNNNCTCC	6 cut(s)	311, 341, 1472, 1502, 1871, 1901
Bsc4I	CCNNNNNNNGG	7 cut(s)	24, 216, 1678, 1828, 2427, 2710, 3041
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	3 cut(s)	2197, 2241, 2450
Bse21I	CCTNAGG	1 cut(s)	1284
Bse3DI	GCAATG	6 cut(s)	1209, 1554, 1638, 1857, 2351, 2733
Bse8I	GATNNNNATC	3 cut(s)	227, 245, 749
BseAI	TCCGGA	2 cut(s)	687, 770
BseBI	CCWGG	6 cut(s)	808, 823, 1823, 1974, 2043, 2427
BseCI	ATCGAT	1 cut(s)	148
BseDI	CCNNGG	9 cut(s)	630, 822, 1677, 1708, 1972, 2016, 2042, 2179, 2426
BseGI	GGATG	5 cut(s)	225, 246, 1831, 2937, 2941
BseJI	GATNNNNATC	3 cut(s)	227, 245, 749
BseLI	CCNNNNNNNGG	7 cut(s)	24, 216, 1678, 1828, 2427, 2710, 3041
BseMI	GCAATG	6 cut(s)	1209, 1554, 1638, 1857, 2351, 2733
BseMII	CTCAG	7 cut(s)	493, 1267, 1275, 1853, 2088, 2190, 3071
BseNI	ACTGG	3 cut(s)	2197, 2241, 2450
BsePI	GCGCGC	2 cut(s)	940, 942
BseRI	GAGGAG	1 cut(s)	2680
BseSI	GKGCMC	1 cut(s)	3034
BseXI	GCAGC	9 cut(s)	843, 1359, 1455, 1516, 1538, 1561, 1907, 1927, 2959
BseYI	CCCAGC	1 cut(s)	1222
BsgI	GTGCAG	1 cut(s)	1632
Bsh1236I	CGCG	5 cut(s)	848, 942, 944, 1044, 1403
BshFI	GGCC	7 cut(s)	869, 1241, 1313, 1676, 2573, 2604, 2907
BshNI	GGYRCC	2 cut(s)	1383, 3029
BshVI	ATCGAT	1 cut(s)	148
BsiHKAI	GWGCWC	5 cut(s)	273, 564, 1011, 1254, 1924
BslFI	GGGAC	5 cut(s)	277, 1345, 2137, 2197, 2832
BslI	CCNNNNNNNGG	7 cut(s)	24, 216, 1678, 1828, 2427, 2710, 3041
BsmAI	GTCTC	7 cut(s)	160, 766, 1010, 1043, 1340, 1703, 2969
BsmBI	CGTCTC	3 cut(s)	1010, 1043, 1340
BsmFI	GGGAC	5 cut(s)	277, 1345, 2137, 2197, 2832
BsmI	GAATGC	3 cut(s)	1552, 2669, 2748
BsnI	GGCC	7 cut(s)	869, 1241, 1313, 1676, 2573, 2604, 2907
Bso31I	GGTCTC	2 cut(s)	160, 766
Bsp1286I	GDGCHC	6 cut(s)	273, 564, 1011, 1254, 1924, 3034
Bsp13I	TCCGGA	2 cut(s)	687, 770
Bsp1407I	TGTACA	2 cut(s)	2380, 2790
Bsp1720I	GCTNAGC	1 cut(s)	2955
BspANI	GGCC	7 cut(s)	869, 1241, 1313, 1676, 2573, 2604, 2907
BspCNI	CTCAG	7 cut(s)	492, 1266, 1276, 1852, 2089, 2191, 3070
BspDI	ATCGAT	1 cut(s)	148
BspEI	TCCGGA	2 cut(s)	687, 770
BspFNI	CGCG	5 cut(s)	848, 942, 944, 1044, 1403
BspHI	TCATGA	1 cut(s)	990
BspLI	GGNNCC	3 cut(s)	1385, 2177, 3031
BspMI	ACCTGC	3 cut(s)	1160, 1868, 2263
BspOI	GCTAGC	2 cut(s)	2864, 2954
BspPI	GGATC	7 cut(s)	52, 92, 254, 903, 1065, 1459, 2441
BspQI	GCTCTTC	1 cut(s)	552
BspT107I	GGYRCC	2 cut(s)	1383, 3029
BspTNI	GGTCTC	2 cut(s)	160, 766
BsrBI	CCGCTC	1 cut(s)	534
BsrDI	GCAATG	6 cut(s)	1209, 1554, 1638, 1857, 2351, 2733
BsrFI	RCCGGY	1 cut(s)	605
BsrGI	TGTACA	2 cut(s)	2380, 2790
BsrI	ACTGG	3 cut(s)	2197, 2241, 2450
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	9 cut(s)	630, 822, 1677, 1708, 1972, 2016, 2042, 2179, 2426
BssHII	GCGCGC	2 cut(s)	940, 942
BssNI	GRCGYC	1 cut(s)	1067
BssT1I	CCWWGG	4 cut(s)	1677, 1708, 2016, 2179
Bst2UI	CCWGG	6 cut(s)	808, 823, 1823, 1974, 2043, 2427
Bst4CI	ACNGT	4 cut(s)	137, 760, 1054, 2628
Bst6I	CTCTTC	3 cut(s)	552, 1517, 2841
BstACI	GRCGYC	1 cut(s)	1067
BstAPI	GCANNNNNTGC	1 cut(s)	1558
BstAUI	TGTACA	2 cut(s)	2380, 2790
BstDEI	CTNAG	9 cut(s)	479, 1253, 1284, 1839, 2097, 2199, 2438, 2955, 3057
BstF5I	GGATG	5 cut(s)	225, 246, 1831, 2937, 2941
BstFNI	CGCG	5 cut(s)	848, 942, 944, 1044, 1403
BstH2I	RGCGCY	2 cut(s)	857, 1398
BstHHI	GCGC	7 cut(s)	856, 942, 944, 946, 1397, 1403, 2013
BstMAI	GTCTC	7 cut(s)	160, 766, 1010, 1043, 1340, 1703, 2969
BstNI	CCWGG	6 cut(s)	808, 823, 1823, 1974, 2043, 2427
BstNSI	RCATGY	3 cut(s)	2791, 2963, 2991
BstPAI	GACNNNNGTC	1 cut(s)	668
BstSFI	CTRYAG	1 cut(s)	2230
BstSLI	GKGCMC	1 cut(s)	3034
BstUI	CGCG	5 cut(s)	848, 942, 944, 1044, 1403
BstV1I	GCAGC	9 cut(s)	843, 1359, 1455, 1516, 1538, 1561, 1907, 1927, 2959
BstV2I	GAAGAC	5 cut(s)	189, 1085, 2249, 2351, 2558
BstX2I	RGATCY	1 cut(s)	1057
BstYI	RGATCY	1 cut(s)	1057
Bsu15I	ATCGAT	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	1284
BsuI	GTATCC	1 cut(s)	2847
BsuRI	GGCC	7 cut(s)	869, 1241, 1313, 1676, 2573, 2604, 2907
BsuTUI	ATCGAT	1 cut(s)	148
BtgZI	GCGATG	2 cut(s)	565, 2879
BtrI	CACGTC	1 cut(s)	1390
BtsCI	GGATG	5 cut(s)	225, 246, 1831, 2937, 2941
BtsI	GCAGTG	1 cut(s)	2607
BtsIMutI	CAGTG	4 cut(s)	2196, 2300, 2607, 2895
BveI	ACCTGC	3 cut(s)	1160, 1868, 2263
CaiI	CAGNNNCTG	2 cut(s)	322, 2894
CciI	TCATGA	1 cut(s)	990
CfoI	GCGC	7 cut(s)	856, 942, 944, 946, 1397, 1403, 2013
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	6 cut(s)	207, 835, 867, 1674, 2105, 2621
ClaI	ATCGAT	1 cut(s)	148
CpoI	CGGWCCG	1 cut(s)	835
CseI	GACGC	5 cut(s)	493, 589, 1056, 1090, 1175
Csp6I	GTAC	5 cut(s)	623, 1231, 1795, 2381, 2791
CspI	CGGWCCG	1 cut(s)	835
CviQI	GTAC	5 cut(s)	623, 1231, 1795, 2381, 2791
DdeI	CTNAG	9 cut(s)	479, 1253, 1284, 1839, 2097, 2199, 2438, 2955, 3057
EaeI	YGGCCR	1 cut(s)	2905
Eam1104I	CTCTTC	3 cut(s)	552, 1517, 2841
EarI	CTCTTC	3 cut(s)	552, 1517, 2841
EciI	GGCGGA	2 cut(s)	563, 634
Ecl136II	GAGCTC	3 cut(s)	271, 1009, 1252
Eco130I	CCWWGG	4 cut(s)	1677, 1708, 2016, 2179
Eco147I	AGGCCT	2 cut(s)	1313, 2573
Eco24I	GRGCYC	3 cut(s)	273, 1011, 1254
Eco31I	GGTCTC	2 cut(s)	160, 766
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	4 cut(s)	207, 835, 2105, 2621
Eco53kI	GAGCTC	3 cut(s)	271, 1009, 1252
Eco57I	CTGAAG	9 cut(s)	1669, 1764, 1793, 1811, 2316, 2432, 2579, 2843, 2865
Eco81I	CCTNAGG	1 cut(s)	1284
EcoICRI	GAGCTC	3 cut(s)	271, 1009, 1252
EcoRI	GAATTC	2 cut(s)	1665, 2225
EcoRII	CCWGG	6 cut(s)	806, 821, 1821, 1972, 2041, 2425
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	4 cut(s)	1677, 1708, 2016, 2179
EcoT22I	ATGCAT	2 cut(s)	1554, 2993
EcoT38I	GRGCYC	3 cut(s)	273, 1011, 1254
ErhI	CCWWGG	4 cut(s)	1677, 1708, 2016, 2179
Esp3I	CGTCTC	3 cut(s)	1010, 1043, 1340
FalI	AAGNNNNNCTT	4 cut(s)	1620, 1652, 2405, 2437
FaqI	GGGAC	5 cut(s)	277, 1345, 2137, 2197, 2832
FbaI	TGATCA	4 cut(s)	1134, 1174, 1579, 1726
FokI	GGATG	5 cut(s)	232, 253, 1838, 2944, 2948
FriOI	GRGCYC	3 cut(s)	273, 1011, 1254
FspI	TGCGCA	1 cut(s)	2012
GlaI	GCGC	7 cut(s)	855, 941, 943, 945, 1396, 1402, 2012
GsaI	CCCAGC	1 cut(s)	1226
GsuI	CTGGAG	3 cut(s)	1025, 1359, 2679
HaeII	RGCGCY	2 cut(s)	857, 1398
HaeIII	GGCC	7 cut(s)	869, 1241, 1313, 1676, 2573, 2604, 2907
HgaI	GACGC	5 cut(s)	493, 589, 1056, 1090, 1175
HhaI	GCGC	7 cut(s)	856, 942, 944, 946, 1397, 1403, 2013
Hin1I	GRCGYC	1 cut(s)	1067
Hin6I	GCGC	7 cut(s)	854, 940, 942, 944, 1395, 1401, 2011
HinP1I	GCGC	7 cut(s)	854, 940, 942, 944, 1395, 1401, 2011
HincII	GTYRAC	1 cut(s)	2418
HindII	GTYRAC	1 cut(s)	2418
HindIII	AAGCTT	2 cut(s)	1760, 2799
HphI	GGTGA	6 cut(s)	620, 1184, 1207, 1532, 2456, 2771
Hpy166II	GTNNAC	3 cut(s)	2418, 2624, 3049
Hpy8I	GTNNAC	3 cut(s)	2418, 2624, 3049
Hpy99I	CGWCG	6 cut(s)	106, 509, 605, 712, 1049, 1169
HpyCH4III	ACNGT	4 cut(s)	137, 760, 1054, 2628
HpyCH4IV	ACGT	1 cut(s)	1389
HpyF3I	CTNAG	9 cut(s)	479, 1253, 1284, 1839, 2097, 2199, 2438, 2955, 3057
HpySE526I	ACGT	1 cut(s)	1389
Hsp92I	GRCGYC	1 cut(s)	1067
HspAI	GCGC	7 cut(s)	854, 940, 942, 944, 1395, 1401, 2011
Kpn2I	TCCGGA	2 cut(s)	687, 770
Ksp22I	TGATCA	4 cut(s)	1134, 1174, 1579, 1726
LguI	GCTCTTC	1 cut(s)	552
Lsp1109I	GCAGC	9 cut(s)	843, 1359, 1455, 1516, 1538, 1561, 1907, 1927, 2959
LweI	GCATC	6 cut(s)	322, 2102, 2249, 2764, 2894, 2905
MaeII	ACGT	1 cut(s)	1389
MaeIII	GTNAC	5 cut(s)	1603, 2020, 2164, 2452, 2740
MbiI	CCGCTC	1 cut(s)	534
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	1057
MhlI	GDGCHC	6 cut(s)	273, 564, 1011, 1254, 1924, 3034
MlsI	TGGCCA	1 cut(s)	2907
MluNI	TGGCCA	1 cut(s)	2907
MlyI	GAGTC	5 cut(s)	299, 415, 678, 761, 1331
MmeI	TCCRAC	5 cut(s)	125, 789, 1458, 2116, 2864
Mox20I	TGGCCA	1 cut(s)	2907
Mph1103I	ATGCAT	2 cut(s)	1554, 2993
MroI	TCCGGA	2 cut(s)	687, 770
MroXI	GAANNNNTTC	2 cut(s)	1121, 1278
MscI	TGGCCA	1 cut(s)	2907
MseI	TTAA	4 cut(s)	8, 1746, 2073, 2964
MslI	CAYNNNNRTG	3 cut(s)	2738, 2757, 2964
Msp20I	TGGCCA	1 cut(s)	2907
MspA1I	CMGCKG	1 cut(s)	1529
MunI	CAATTG	1 cut(s)	425
Mva1269I	GAATGC	3 cut(s)	1552, 2669, 2748
MvaI	CCWGG	6 cut(s)	808, 823, 1823, 1974, 2043, 2427
MvnI	CGCG	5 cut(s)	848, 942, 944, 1044, 1403
NciI	CCSGG	5 cut(s)	632, 866, 1330, 1673, 2090
NheI	GCTAGC	2 cut(s)	2860, 2950
NlaIV	GGNNCC	3 cut(s)	1385, 2177, 3031
NmeAIII	GCCGAG	2 cut(s)	277, 1267
NmuCI	GTSAC	3 cut(s)	2020, 2164, 2740
NsbI	TGCGCA	1 cut(s)	2012
NsiI	ATGCAT	2 cut(s)	1554, 2993
NspI	RCATGY	3 cut(s)	2791, 2963, 2991
OliI	CACNNNNGTG	1 cut(s)	2757
PaeI	GCATGC	1 cut(s)	2991
PagI	TCATGA	1 cut(s)	990
PaqCI	CACCTGC	1 cut(s)	1160
PauI	GCGCGC	2 cut(s)	940, 942
PceI	AGGCCT	2 cut(s)	1313, 2573
PciI	ACATGT	1 cut(s)	2787
PciSI	GCTCTTC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	4 cut(s)	62, 183, 504, 1239
PctI	GAATGC	3 cut(s)	1552, 2669, 2748
PdmI	GAANNNNTTC	2 cut(s)	1121, 1278
PfeI	GAWTC	7 cut(s)	202, 338, 841, 1660, 1843, 2431, 2525
PflMI	CCANNNNNTGG	2 cut(s)	2710, 3041
PleI	GAGTC	5 cut(s)	298, 415, 677, 761, 1330
PpsI	GAGTC	5 cut(s)	298, 415, 677, 761, 1330
PscI	ACATGT	1 cut(s)	2787
PshAI	GACNNNNGTC	1 cut(s)	668
Psp124BI	GAGCTC	3 cut(s)	273, 1011, 1254
Psp6I	CCWGG	6 cut(s)	806, 821, 1821, 1972, 2041, 2425
PspFI	CCCAGC	1 cut(s)	1222
PspGI	CCWGG	6 cut(s)	806, 821, 1821, 1972, 2041, 2425
PspN4I	GGNNCC	3 cut(s)	1385, 2177, 3031
PspPI	GGNCC	6 cut(s)	207, 835, 867, 1674, 2105, 2621
PsrI	GAACNNNNNNTAC	2 cut(s)	914, 946
PstNI	CAGNNNCTG	2 cut(s)	322, 2894
PsuI	RGATCY	1 cut(s)	1057
PteI	GCGCGC	2 cut(s)	940, 942
PvuII	CAGCTG	1 cut(s)	1529
RsaI	GTAC	5 cut(s)	624, 1232, 1796, 2382, 2792
RsaNI	GTAC	5 cut(s)	623, 1231, 1795, 2381, 2791
RseI	CAYNNNNRTG	3 cut(s)	2738, 2757, 2964
Rsr2I	CGGWCCG	1 cut(s)	835
RsrII	CGGWCCG	1 cut(s)	835
SacI	GAGCTC	3 cut(s)	273, 1011, 1254
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	8, 1746, 2073, 2964
Sau96I	GGNCC	6 cut(s)	207, 835, 867, 1674, 2105, 2621
SchI	GAGTC	5 cut(s)	299, 415, 678, 761, 1331
SduI	GDGCHC	6 cut(s)	273, 564, 1011, 1254, 1924, 3034
SfaNI	GCATC	6 cut(s)	322, 2102, 2249, 2764, 2894, 2905
SfcI	CTRYAG	1 cut(s)	2230
SgrAI	CRCCGGYG	1 cut(s)	605
SinI	GGWCC	4 cut(s)	207, 835, 2105, 2621
SmiMI	CAYNNNNRTG	3 cut(s)	2738, 2757, 2964
SmlI	CTYRAG	7 cut(s)	82, 458, 1061, 1734, 1763, 2034, 2063
SmoI	CTYRAG	7 cut(s)	82, 458, 1061, 1734, 1763, 2034, 2063
SphI	GCATGC	1 cut(s)	2991
SseBI	AGGCCT	2 cut(s)	1313, 2573
SstI	GAGCTC	3 cut(s)	273, 1011, 1254
StuI	AGGCCT	2 cut(s)	1313, 2573
StyI	CCWWGG	4 cut(s)	1677, 1708, 2016, 2179
TaaI	ACNGT	4 cut(s)	137, 760, 1054, 2628
TaiI	ACGT	1 cut(s)	1392
TatI	WGTACW	3 cut(s)	1794, 2380, 2790
TauI	GCSGC	4 cut(s)	587, 1034, 1406, 2921
TfiI	GAWTC	7 cut(s)	202, 338, 841, 1660, 1843, 2431, 2525
Tru1I	TTAA	4 cut(s)	8, 1746, 2073, 2964
Tru9I	TTAA	4 cut(s)	8, 1746, 2073, 2964
TscAI	CASTG	4 cut(s)	2203, 2307, 2614, 2895
TseFI	GTSAC	3 cut(s)	2020, 2164, 2740
TseI	GCWGC	9 cut(s)	856, 1372, 1443, 1526, 1529, 1574, 1895, 1940, 2947
Tsp45I	GTSAC	3 cut(s)	2020, 2164, 2740
TspGWI	ACGGA	2 cut(s)	50, 119
TspRI	CASTG	4 cut(s)	2203, 2307, 2614, 2895
Van91I	CCANNNNNTGG	2 cut(s)	2710, 3041
VpaK11BI	GGWCC	4 cut(s)	207, 835, 2105, 2621
XapI	RAATTY	5 cut(s)	692, 1665, 2225, 2246, 3023
XbaI	TCTAGA	1 cut(s)	2389
XceI	RCATGY	3 cut(s)	2791, 2963, 2991
XmaJI	CCTAGG	1 cut(s)	1708
XmnI	GAANNNNTTC	2 cut(s)	1121, 1278
Zsp2I	ATGCAT	2 cut(s)	1554, 2993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.