Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014626.1

Orthogroup ID

OG0006820

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3689

Gene Structure 3689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014626.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1471 bp

agttaatggtgaacccaagttcagcatgatgccaaggagtccaggtccagggtctagggggccgactagcccaacttctcctcttcatgcacggttggggggcatgagtttggagtctccaacagggaagctagatgatgggaagagtatatgtcatccacttcctctccctccaggttctcctaccagcccttcttcattgtccagcaatagaactactggagtcactgaaagcatagcttctgccctatcaaagtggaagaagggaaggctccttggaagggggacttttggtcatgtttatgtcggatttaacagtgaaagtgggcaaatgtgtgcaataaaagaagtcaggcttgttgaagatcagtcattaaaagaatgtcttaagcaactgaaccaggaaataaatttgctaagtcagctctcacatccaaacattgttcgatatcacggaagtgaattgggtgacgaggcactttcagtttatttggagtatgtctctggtggctcaattcataaattgcttcaagaatatggtgcctttaaggaacctgtcattcaaaattacaccagacagatattatctggtcttgcctacttacatggcagaaatacagttcatagggacattaaaggtgcaaacatattagtggaccctaatggtgaaatcaagttggcagactttggcatggctaaacatattacaaatgttgcttcgatgctgtcattcaaaggaagtccttactggatggcccctgaggttgtcatgaatacaaatggctatagtctcgcagtggatatatggagcctgggatgtactattcttgaaatggcgacttcaaaacctccatggagccagtatgaaggggtggctgcaatatttaagattggaaacagcaaagatatgccagatattcctgattatctttcccatgatgcaaagaattttgtgaggctgtgcttgcaacgtaacccatctgagcgtcctactgcttctcaactgctagaccaccctttcattagagagcaaatgacaacaagaagttcgaacatcaagctaaccaaggatgccttcccatatgcctttgatggaagcaggactccgccaatactagaactgcattcaaacagaacgagcatcaccttgtgtgatgcagatcatataacaaaacctgcagtaacaagttcaagggctatatggagccccagagagaatgcgaggattacatctttgcccgtatctccttgttcaagccctttacgacaatatggaccagcacacaagagctgttttctttctcctcctcacccaacttatgccatgatgggacagagtaattacaatttgaatgagtattcatcatatacaacaagaccaaacacatcatacactctcgaaccttggcgggaatcacctatgcttagaccccaaacaccgagtggatcaccaagaacaagacccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

489

Amino Acids

53.83

Weight (kDa)

9.02

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570
fragaria_vesca	FvH4_1g24310 FvH4_1g24310
malus_domestica	MD03G1070200.v1.1 MD11G1074000.v1.1
prunus_persica	Prupe.4G270800_v2.0.a1 Prupe.4G270800_v2.0.a1
pyrus_communis	pycom03g05590 pycom11g06140
rosa_chinensis	RchiOBHm_Chr2g0120811
rosa_laevigata	RLG00000018589
rosa_multiflora	Rmu_sc0000621.1_g000004 Rmu_sc0014626.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122820
rosa_rugosa	Rorug02G0231400 Rorug02G0231500
rosa_samantha	Rh2BG299400 Rh2CG277400 Rh2DG313300
rosa_wichuraiana	Rw2G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1184
AccB1I	GGYRCC	1 cut(s)	540
AciI	CCGC	2 cut(s)	1107, 1409
AclWI	GGATC	1 cut(s)	1454
AcsI	RAATTY	2 cut(s)	410, 947
AdeI	CACNNNGTG	2 cut(s)	1150, 1443
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	2 cut(s)	48, 281
AflII	CTTAAG	1 cut(s)	387
AhdI	GACNNNNNGTC	1 cut(s)	292
AjnI	CCWGG	5 cut(s)	41, 47, 173, 400, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	1059, 1091
AleI	CACNNNNGTG	1 cut(s)	457
AluBI	AGCT	5 cut(s)	131, 240, 425, 1061, 1291
AluI	AGCT	5 cut(s)	131, 240, 425, 1061, 1291
Alw26I	GTCTC	3 cut(s)	121, 506, 795
AlwI	GGATC	1 cut(s)	1454
AoxI	GGCC	2 cut(s)	60, 754
ApeKI	GCWGC	1 cut(s)	876
ApoI	RAATTY	2 cut(s)	410, 947
AspS9I	GGNCC	5 cut(s)	45, 60, 656, 755, 1275
AsuHPI	GGTGA	7 cut(s)	21, 480, 678, 1136, 1302, 1408, 1441
AsuII	TTCGAA	1 cut(s)	1050
AvaII	GGWCC	3 cut(s)	45, 656, 1275
AxyI	CCTNAGG	1 cut(s)	760
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	1209
BbvI	GCAGC	1 cut(s)	863
BccI	CCATC	5 cut(s)	132, 746, 986, 1086, 1322
BciT130I	CCWGG	5 cut(s)	43, 49, 175, 402, 813
BcoDI	GTCTC	3 cut(s)	121, 506, 795
BfaI	CTAG	5 cut(s)	55, 67, 132, 1008, 1116
BfmI	CTRYAG	2 cut(s)	785, 1177
BfrI	CTTAAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	1184
BisI	GCNGC	1 cut(s)	877
BlsI	GCNGC	1 cut(s)	878
Bme1390I	CCNGG	5 cut(s)	43, 49, 175, 402, 813
Bme18I	GGWCC	3 cut(s)	45, 656, 1275
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgT120I	GGNCC	5 cut(s)	45, 60, 656, 755, 1275
BmiI	GGNNCC	9 cut(s)	61, 273, 542, 553, 658, 757, 810, 858, 1206
BmrFI	CCNGG	5 cut(s)	43, 49, 175, 402, 813
BmsI	GCATC	6 cut(s)	19, 712, 929, 1061, 1145, 1150
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
BpmI	CTGGAG	2 cut(s)	157, 241
Bpu14I	TTCGAA	1 cut(s)	1050
BsaBI	GATNNNNATC	1 cut(s)	1159
BsaJI	CCNNGG	7 cut(s)	33, 48, 275, 812, 852, 1066, 1404
BsaXI	ACNNNNNCTCC	4 cut(s)	29, 59, 151, 181
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 281
Bse1I	ACTGG	3 cut(s)	224, 753, 860
Bse21I	CCTNAGG	1 cut(s)	760
Bse8I	GATNNNNATC	1 cut(s)	1159
BseBI	CCWGG	5 cut(s)	43, 49, 175, 402, 813
BseDI	CCNNGG	7 cut(s)	33, 48, 275, 812, 852, 1066, 1404
BseGI	GGATG	5 cut(s)	155, 431, 757, 822, 1076
BseJI	GATNNNNATC	1 cut(s)	1159
BseLI	CCNNNNNNNGG	2 cut(s)	48, 281
BseMII	CTCAG	2 cut(s)	751, 973
BseNI	ACTGG	3 cut(s)	224, 753, 860
BseRI	GAGGAG	3 cut(s)	70, 1294, 1297
BseXI	GCAGC	1 cut(s)	863
BshFI	GGCC	2 cut(s)	62, 756
BshNI	GGYRCC	1 cut(s)	540
BslFI	GGGAC	3 cut(s)	299, 642, 1345
BslI	CCNNNNNNNGG	2 cut(s)	48, 281
BsmAI	GTCTC	3 cut(s)	121, 506, 795
BsmFI	GGGAC	3 cut(s)	299, 642, 1345
BsmI	GAATGC	2 cut(s)	1124, 1223
BsnI	GGCC	2 cut(s)	62, 756
Bsp119I	TTCGAA	1 cut(s)	1050
Bsp1286I	GDGCHC	1 cut(s)	1209
Bsp143I	GATC	3 cut(s)	365, 1160, 1446
Bsp19I	CCATGG	1 cut(s)	852
BspACI	CCGC	2 cut(s)	1107, 1409
BspANI	GGCC	2 cut(s)	62, 756
BspCNI	CTCAG	2 cut(s)	752, 974
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	9 cut(s)	61, 273, 542, 553, 658, 757, 810, 858, 1206
BspMAI	CTGCAG	1 cut(s)	1181
BspMI	ACCTGC	1 cut(s)	1184
BspPI	GGATC	1 cut(s)	1454
BspT104I	TTCGAA	1 cut(s)	1050
BspT107I	GGYRCC	1 cut(s)	540
BspTI	CTTAAG	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	224, 753, 860
BssECI	CCNNGG	7 cut(s)	33, 48, 275, 812, 852, 1066, 1404
BssMI	GATC	3 cut(s)	365, 1160, 1446
BssT1I	CCWWGG	5 cut(s)	33, 275, 852, 1066, 1404
Bst2UI	CCWGG	5 cut(s)	43, 49, 175, 402, 813
Bst4CI	ACNGT	3 cut(s)	94, 318, 620
Bst6I	CTCTTC	2 cut(s)	88, 138
BstAFI	CTTAAG	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	1050
BstC8I	GCNNGC	1 cut(s)	966
BstDEI	CTNAG	4 cut(s)	417, 760, 982, 1425
BstDSI	CCRYGG	1 cut(s)	852
BstF5I	GGATG	5 cut(s)	155, 431, 757, 822, 1076
BstKTI	GATC	3 cut(s)	368, 1163, 1449
BstMAI	GTCTC	3 cut(s)	121, 506, 795
BstMBI	GATC	3 cut(s)	365, 1160, 1446
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 965
BstNI	CCWGG	5 cut(s)	43, 49, 175, 402, 813
BstSCI	CCNGG	5 cut(s)	41, 47, 173, 400, 811
BstSFI	CTRYAG	2 cut(s)	785, 1177
BstV1I	GCAGC	1 cut(s)	863
Bsu36I	CCTNAGG	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	62, 756
BtgI	CCRYGG	1 cut(s)	852
BtsCI	GGATG	5 cut(s)	155, 431, 757, 822, 1076
BtsI	GCAGTG	1 cut(s)	802
BtsIMutI	CAGTG	3 cut(s)	226, 323, 802
BveI	ACCTGC	1 cut(s)	1184
Cac8I	GCNNGC	1 cut(s)	966
CciI	TCATGA	1 cut(s)	769
Cfr13I	GGNCC	5 cut(s)	45, 60, 656, 755, 1275
CseI	GACGC	1 cut(s)	975
Csp6I	GTAC	1 cut(s)	820
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	4 cut(s)	417, 760, 982, 1425
DpnI	GATC	3 cut(s)	367, 1162, 1448
DpnII	GATC	3 cut(s)	365, 1160, 1446
DraIII	CACNNNGTG	2 cut(s)	1150, 1443
DriI	GACNNNNNGTC	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	88, 138
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	2 cut(s)	88, 138
EciI	GGCGGA	1 cut(s)	1096
Eco130I	CCWWGG	5 cut(s)	33, 275, 852, 1066, 1404
Eco24I	GRGCYC	1 cut(s)	1209
Eco32I	GATATC	1 cut(s)	450
Eco47I	GGWCC	3 cut(s)	45, 656, 1275
Eco81I	CCTNAGG	1 cut(s)	760
EcoRII	CCWGG	5 cut(s)	41, 47, 173, 400, 811
EcoRV	GATATC	1 cut(s)	450
EcoT14I	CCWWGG	5 cut(s)	33, 275, 852, 1066, 1404
EcoT38I	GRGCYC	1 cut(s)	1209
ErhI	CCWWGG	5 cut(s)	33, 275, 852, 1066, 1404
FaqI	GGGAC	3 cut(s)	299, 642, 1345
FauI	CCCGC	1 cut(s)	1402
FauNDI	CATATG	1 cut(s)	1082
Fnu4HI	GCNGC	1 cut(s)	877
FokI	GGATG	5 cut(s)	142, 418, 764, 829, 1083
FriOI	GRGCYC	1 cut(s)	1209
Fsp4HI	GCNGC	1 cut(s)	877
FspBI	CTAG	5 cut(s)	55, 67, 132, 1008, 1116
GluI	GCNGC	1 cut(s)	877
GsuI	CTGGAG	2 cut(s)	157, 241
HaeIII	GGCC	2 cut(s)	62, 756
HgaI	GACGC	1 cut(s)	975
HinfI	GANTC	5 cut(s)	38, 114, 223, 1103, 1413
HphI	GGTGA	7 cut(s)	21, 480, 678, 1136, 1302, 1408, 1441
Hpy166II	GTNNAC	2 cut(s)	12, 656
Hpy188I	TCNGA	2 cut(s)	309, 983
Hpy188III	TCNNGA	5 cut(s)	531, 770, 828, 921, 1398
Hpy8I	GTNNAC	2 cut(s)	12, 656
HpyAV	CCTTC	6 cut(s)	202, 257, 262, 274, 861, 1085
HpyCH4III	ACNGT	3 cut(s)	94, 318, 620
HpyCH4IV	ACGT	1 cut(s)	971
HpyCH4V	TGCA	9 cut(s)	90, 339, 642, 879, 942, 968, 1124, 1158, 1179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 965
HpyF3I	CTNAG	4 cut(s)	417, 760, 982, 1425
HpySE526I	ACGT	1 cut(s)	971
Kzo9I	GATC	3 cut(s)	365, 1160, 1446
LmnI	GCTCC	4 cut(s)	277, 808, 856, 1204
Lsp1109I	GCAGC	1 cut(s)	863
LweI	GCATC	6 cut(s)	19, 712, 929, 1061, 1145, 1150
MaeI	CTAG	5 cut(s)	55, 67, 132, 1008, 1116
MaeII	ACGT	1 cut(s)	971
MaeIII	GTNAC	4 cut(s)	224, 468, 972, 1181
MalI	GATC	3 cut(s)	367, 1162, 1448
MboI	GATC	3 cut(s)	365, 1160, 1446
MboII	GAAGA	5 cut(s)	75, 155, 187, 272, 375
MhlI	GDGCHC	1 cut(s)	1209
MluCI	AATT	8 cut(s)	410, 462, 514, 522, 566, 947, 1340, 1346
MlyI	GAGTC	4 cut(s)	47, 123, 232, 1097
MmeI	TCCRAC	2 cut(s)	144, 287
MseI	TTAA	7 cut(s)	4, 313, 375, 388, 547, 634, 886
MslI	CAYNNNNRTG	3 cut(s)	301, 457, 651
MspCI	CTTAAG	1 cut(s)	387
MspR9I	CCNGG	5 cut(s)	43, 49, 175, 402, 813
Mva1269I	GAATGC	2 cut(s)	1124, 1223
MvaI	CCWGG	5 cut(s)	43, 49, 175, 402, 813
MwoI	GCNNNNNNNGC	2 cut(s)	422, 965
NcoI	CCATGG	1 cut(s)	852
NdeI	CATATG	1 cut(s)	1082
NdeII	GATC	3 cut(s)	365, 1160, 1446
NlaIV	GGNNCC	9 cut(s)	61, 273, 542, 553, 658, 757, 810, 858, 1206
NmuCI	GTSAC	2 cut(s)	224, 468
NspV	TTCGAA	1 cut(s)	1050
OliI	CACNNNNGTG	1 cut(s)	457
PagI	TCATGA	1 cut(s)	769
PctI	GAATGC	2 cut(s)	1124, 1223
PfeI	GAWTC	1 cut(s)	1413
PkrI	GCNGC	1 cut(s)	878
PleI	GAGTC	4 cut(s)	46, 122, 231, 1097
PpsI	GAGTC	4 cut(s)	46, 122, 231, 1097
Psp6I	CCWGG	5 cut(s)	41, 47, 173, 400, 811
PspGI	CCWGG	5 cut(s)	41, 47, 173, 400, 811
PspN4I	GGNNCC	9 cut(s)	61, 273, 542, 553, 658, 757, 810, 858, 1206
PspPI	GGNCC	5 cut(s)	45, 60, 656, 755, 1275
PstI	CTGCAG	1 cut(s)	1181
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	3 cut(s)	301, 457, 651
SaqAI	TTAA	7 cut(s)	4, 313, 375, 388, 547, 634, 886
SatI	GCNGC	1 cut(s)	877
Sau3AI	GATC	3 cut(s)	365, 1160, 1446
Sau96I	GGNCC	5 cut(s)	45, 60, 656, 755, 1275
SchI	GAGTC	4 cut(s)	47, 123, 232, 1097
ScrFI	CCNGG	5 cut(s)	43, 49, 175, 402, 813
SduI	GDGCHC	1 cut(s)	1209
SfaNI	GCATC	6 cut(s)	19, 712, 929, 1061, 1145, 1150
SfcI	CTRYAG	2 cut(s)	785, 1177
SfuI	TTCGAA	1 cut(s)	1050
SinI	GGWCC	3 cut(s)	45, 656, 1275
SmiMI	CAYNNNNRTG	3 cut(s)	301, 457, 651
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	8 cut(s)	410, 462, 514, 522, 566, 947, 1340, 1346
SsiI	CCGC	2 cut(s)	1107, 1409
SspI	AATATT	1 cut(s)	883
SspMI	CTAG	5 cut(s)	55, 67, 132, 1008, 1116
StyD4I	CCNGG	5 cut(s)	41, 47, 173, 400, 811
StyI	CCWWGG	5 cut(s)	33, 275, 852, 1066, 1404
TaaI	ACNGT	3 cut(s)	94, 318, 620
TaiI	ACGT	1 cut(s)	974
TaqI	TCGA	4 cut(s)	446, 720, 1050, 1399
TasI	AATT	8 cut(s)	410, 462, 514, 522, 566, 947, 1340, 1346
TatI	WGTACW	1 cut(s)	819
TfiI	GAWTC	1 cut(s)	1413
Tru1I	TTAA	7 cut(s)	4, 313, 375, 388, 547, 634, 886
Tru9I	TTAA	7 cut(s)	4, 313, 375, 388, 547, 634, 886
TscAI	CASTG	3 cut(s)	233, 323, 802
TseFI	GTSAC	2 cut(s)	224, 468
TseI	GCWGC	1 cut(s)	876
Tsp45I	GTSAC	2 cut(s)	224, 468
TspDTI	ATGAA	8 cut(s)	75, 187, 507, 612, 786, 880, 1010, 1351
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	3 cut(s)	233, 323, 802
Vha464I	CTTAAG	1 cut(s)	387
VpaK11BI	GGWCC	3 cut(s)	45, 656, 1275
XapI	RAATTY	2 cut(s)	410, 947
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1440
XspI	CTAG	5 cut(s)	55, 67, 132, 1008, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.