Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006820

Physical Location & Seq

Genomic Coordinates Forward (+)

23063528 .. 23064548

Gene Structure 1021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0231400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCATTTCTCATCAGTGAATTCTTTTTTCACCATCCCCATGAATTCTTCAATAAATCTTCGGTTTTTCACCGCAACCAGAGCCATTATTGTTCTTCTTCTTCTTCTTCTTGTTCTCTCTCCAGCCTCTTGTTTTACTTCTCTTCGGGGACTATTGTTTGCTGAGAAAGCCAGATTGGGCTCAACACCACCGAGCTGCCACAACAAGTGCAACCAGTGCCACCCTTGCATGGCGGTCCAAGTCCCCACCATGCCCAGCCGCGGCCGGGTCCGACCCGTGGGAAAGACCCGACCCGCTAAGCCCATGATGCTCTTTGACCCGTCTCATCTGGATAACAGGTACTCCAATTACAAGCCACTGGGTTGGAAATGCCACTGTGGTGACCACTTCTTCAATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

133

Amino Acids

14.94

Weight (kDa)

9.93

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	58 - 133	1.5e-21	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570
fragaria_vesca	FvH4_1g24310 FvH4_1g24310
malus_domestica	MD03G1070200.v1.1 MD11G1074000.v1.1
prunus_persica	Prupe.4G270800_v2.0.a1 Prupe.4G270800_v2.0.a1
pyrus_communis	pycom03g05590 pycom11g06140
rosa_chinensis	RchiOBHm_Chr2g0120811
rosa_laevigata	RLG00000018589
rosa_multiflora	Rmu_sc0000621.1_g000004 Rmu_sc0014626.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122820
rosa_rugosa	Rorug02G0231400 Rorug02G0231500
rosa_samantha	Rh2BG299400 Rh2CG277400 Rh2DG313300
rosa_wichuraiana	Rw2G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	5 cut(s)	72, 233, 259, 261, 294
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	2 cut(s)	19, 43
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	4 cut(s)	229, 260, 265, 277
AgsI	TTSAA	2 cut(s)	51, 394
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AleI	CACNNNNGTG	1 cut(s)	378
AluBI	AGCT	1 cut(s)	195
AluI	AGCT	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	19, 43
AspS9I	GGNCC	2 cut(s)	235, 268
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	3 cut(s)	22, 61, 392
AvaII	GGWCC	2 cut(s)	235, 268
BanII	GRGCYC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	41
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	400
BisI	GCNGC	3 cut(s)	196, 259, 262
BlpI	GCTNAGC	1 cut(s)	297
BlsI	GCNGC	3 cut(s)	197, 260, 263
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	2 cut(s)	235, 268
BmgT120I	GGNCC	2 cut(s)	235, 268
BmiI	GGNNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	266
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	297
BmuI	ACTGGG	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	297
BpuMI	CCSGG	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	259, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	4 cut(s)	229, 260, 265, 277
Bse1I	ACTGG	2 cut(s)	214, 363
BseDI	CCNNGG	2 cut(s)	259, 276
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	4 cut(s)	229, 260, 265, 277
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	214, 363
BseX3I	CGGCCG	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	182
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	261
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	265
BslFI	GGGAC	2 cut(s)	162, 227
BslI	CCNNNNNNNGG	4 cut(s)	229, 260, 265, 277
BsmAI	GTCTC	1 cut(s)	327
BsmBI	CGTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	162, 227
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp1720I	GCTNAGC	1 cut(s)	297
BspACI	CCGC	5 cut(s)	72, 233, 259, 261, 294
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	214, 363
BssECI	CCNNGG	2 cut(s)	259, 276
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	162, 297
BstDSI	CCRYGG	2 cut(s)	259, 276
BstEII	GGTNACC	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	33
BstFNI	CGCG	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	327
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 167, 216, 225, 307
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	363
BstZI	CGGCCG	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	264
BtgI	CCRYGG	2 cut(s)	259, 276
BtsCI	GGATG	1 cut(s)	33
BtsIMutI	CAGTG	4 cut(s)	21, 221, 356, 373
Cfr13I	GGNCC	2 cut(s)	235, 268
Cfr42I	CCGCGG	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	4 cut(s)	40, 229, 250, 304
CviJI	RGCY	9 cut(s)	83, 125, 170, 180, 195, 258, 264, 301, 355
CviKI_1	RGCY	9 cut(s)	83, 125, 170, 180, 195, 258, 264, 301, 355
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	162, 297
EaeI	YGGCCR	1 cut(s)	262
EagI	CGGCCG	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
EclXI	CGGCCG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	235, 268
Eco52I	CGGCCG	1 cut(s)	262
Eco91I	GGTNACC	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	380
EcoRI	GAATTC	2 cut(s)	19, 43
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	182
Esp3I	CGTCTC	1 cut(s)	327
FaeI	CATG	4 cut(s)	43, 232, 253, 307
FaiI	YATR	4 cut(s)	41, 230, 251, 305
FaqI	GGGAC	2 cut(s)	162, 227
FatI	CATG	4 cut(s)	39, 228, 249, 303
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	196, 259, 262
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	196, 259, 262
FspBI	CTAG	1 cut(s)	400
GluI	GCNGC	3 cut(s)	196, 259, 262
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	264
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	4 cut(s)	43, 232, 253, 307
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	3 cut(s)	22, 61, 392
Hpy188I	TCNGA	1 cut(s)	272
Hpy188III	TCNNGA	1 cut(s)	329
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	3 cut(s)	4, 210, 228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 167, 216, 225, 307
HpyF3I	CTNAG	2 cut(s)	162, 297
Hsp92II	CATG	4 cut(s)	43, 232, 253, 307
KspI	CCGCGG	1 cut(s)	262
LpnPI	CCDG	9 cut(s)	91, 135, 184, 227, 268, 278, 314, 322, 344
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	380
MboII	GAAGA	9 cut(s)	39, 50, 86, 89, 92, 95, 98, 134, 382
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	3 cut(s)	19, 43, 346
MmeI	TCCRAC	2 cut(s)	295, 344
MnlI	CCTC	1 cut(s)	136
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	2 cut(s)	38, 378
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	1 cut(s)	265
MspR9I	CCNGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	5 cut(s)	80, 167, 216, 225, 307
NciI	CCSGG	1 cut(s)	266
NlaIII	CATG	4 cut(s)	43, 232, 253, 307
NlaIV	GGNNCC	1 cut(s)	269
NmuCI	GTSAC	1 cut(s)	380
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	378
PkrI	GCNGC	3 cut(s)	197, 260, 263
PspEI	GGTNACC	1 cut(s)	380
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	269
PspPI	GGNCC	2 cut(s)	235, 268
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	38, 378
SacII	CCGCGG	1 cut(s)	262
SatI	GCNGC	3 cut(s)	196, 259, 262
Sau96I	GGNCC	2 cut(s)	235, 268
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	2 cut(s)	197, 341
SfaNI	GCATC	1 cut(s)	297
Sfr303I	CCGCGG	1 cut(s)	262
SgrBI	CCGCGG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	235, 268
SmiMI	CAYNNNNRTG	2 cut(s)	38, 378
Sse9I	AATT	3 cut(s)	19, 43, 346
SsiI	CCGC	5 cut(s)	72, 233, 259, 261, 294
SspMI	CTAG	1 cut(s)	400
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	377
TasI	AATT	3 cut(s)	19, 43, 346
TauI	GCSGC	2 cut(s)	261, 264
TscAI	CASTG	4 cut(s)	21, 221, 363, 380
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	195
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	4 cut(s)	21, 221, 363, 380
VpaK11BI	GGWCC	2 cut(s)	235, 268
XapI	RAATTY	2 cut(s)	19, 43
XspI	CTAG	1 cut(s)	400
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.