Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006820

Physical Location & Seq

Genomic Coordinates Forward (+)

23067950 .. 23070980

Gene Structure 3031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0231500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGCACACCATGGCTCTCTCATCTCCTTCCTCCTCTTTTCTACTCTCCCACACCACCCGCCTTCACTTCCGAAGCCCCAGAAATCTCTCCACCCCCACACGACGACCTCTCTCACTCTCAGTCTCAGCTTCTTCCTCTGCCTCTCTCCAAGCCTTGATTTTCGACTGCGACGGCGTCATCCTCGAGTCGGAGCACTTGCACCGCCAAGCTTACAACGACGCCTTCGCTCACTTCAACGTCCGCTGCTCCTCTCAGACCCTCAATTGGGACCCCGACTTCTACGACCAGCTCCAGAACCAAATCGGCGGCGGCAAGCCCAAAATGCGATGGTACTTTAAGGAGAACGGGTGGCCGTCGTCCACCATTTTCGAGAAGCCTCCAGAAGACGATGAGGGCCGAGCCAAGCTCATCGACACTCTTCAGGATTGGAAAACTGAGAGGTACAAAGAAATTATCAAGTCCGGAACTGTGGAACCAAGACCAGGAGTTTTGAGATTAATGGATGAGGCCAAGGCCGCTGGGAAAAAGCTCGCTGTTTGCTCTGCAGCTACTAAGAGTTCAGTTATATTATGTCTTGAAAGCCTCATAGGAAATGAGCGGTTTCAAGGTCTTGATTGCTTTCTTGCTGGTGATGATGTGAAGGAAAAAAAGCCTGACCCTTCCATTTATCTTACAGCTACCAAGAGACTCGGTATCTCAGTAAGAGATTGTTTGGTTGTAGAGGACAGTGTTATTGGGCTACAGGCAGCAACAAAAGCTGGGATGTCATGTGTGATTAGCTATACATCTTCTACAGCTGACCAGGATTTTAAAGATGCAATAGCAATATATCCTGACTTGAGTAACATAAGACTGAAAGACTTGGAATTGTTACTTGAAAATGCTGTCATTGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04010 ko04540 ko04912 map04010 map04540 map04912

Pfam Domains

Protein Families

Pkinase

Protein Analysis

300

Amino Acids

33.21

Weight (kDa)

6.1

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	51 - 255	5.6e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	145 - 259	9.6e-18	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006820)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570 AT1G53570
fragaria_vesca	FvH4_1g24310 FvH4_1g24310
malus_domestica	MD03G1070200.v1.1 MD11G1074000.v1.1
prunus_persica	Prupe.4G270800_v2.0.a1 Prupe.4G270800_v2.0.a1
pyrus_communis	pycom03g05590 pycom11g06140
rosa_chinensis	RchiOBHm_Chr2g0120811
rosa_laevigata	RLG00000018589
rosa_multiflora	Rmu_sc0000621.1_g000004 Rmu_sc0014626.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122820
rosa_rugosa	Rorug02G0231400 Rorug02G0231500
rosa_samantha	Rh2BG299400 Rh2CG277400 Rh2DG313300
rosa_wichuraiana	Rw2G023090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	601
AccIII	TCCGGA	1 cut(s)	464
AciI	CCGC	7 cut(s)	61, 205, 244, 309, 312, 519, 601
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	2 cut(s)	177, 222
AfaI	GTAC	2 cut(s)	335, 446
AfiI	CCNNNNNNNGG	4 cut(s)	190, 267, 268, 485
AgsI	TTSAA	4 cut(s)	238, 581, 608, 881
AjnI	CCWGG	2 cut(s)	484, 804
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	130, 682
Ama87I	CYCGRG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	464
AoxI	GGCC	4 cut(s)	353, 397, 510, 516
ApeKI	GCWGC	3 cut(s)	246, 548, 749
AseI	ATTAAT	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	271, 397
AsuHPI	GGTGA	1 cut(s)	644
AvaI	CYCGRG	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	3 cut(s)	233, 560, 761
BccI	CCATC	1 cut(s)	324
BceAI	ACGGC	2 cut(s)	190, 340
BciT130I	CCWGG	2 cut(s)	486, 806
BcoDI	GTCTC	2 cut(s)	130, 682
BfmI	CTRYAG	3 cut(s)	546, 743, 795
BisI	GCNGC	6 cut(s)	247, 310, 313, 519, 549, 750
BlsI	GCNGC	6 cut(s)	248, 311, 314, 520, 550, 751
Bme1390I	CCNGG	2 cut(s)	486, 806
Bme18I	GGWCC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	2 cut(s)	271, 397
BmiI	GGNNCC	3 cut(s)	272, 273, 477
BmrFI	CCNGG	2 cut(s)	486, 806
BmsI	GCATC	1 cut(s)	808
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	393, 425
BpmI	CTGGAG	2 cut(s)	278, 366
BpuEI	CTTGAG	1 cut(s)	862
BsaHI	GRCGYC	2 cut(s)	177, 222
BsaJI	CCNNGG	2 cut(s)	12, 513
BsaWI	WCCGGW	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 267, 268, 485
Bse3DI	GCAATG	1 cut(s)	891
BseAI	TCCGGA	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	486, 806
BseDI	CCNNGG	2 cut(s)	12, 513
BseGI	GGATG	3 cut(s)	180, 511, 771
BseLI	CCNNNNNNNGG	4 cut(s)	190, 267, 268, 485
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	5 cut(s)	135, 141, 269, 429, 714
BseRI	GAGGAG	2 cut(s)	25, 241
BseXI	GCAGC	3 cut(s)	233, 560, 761
BseYI	CCCAGC	2 cut(s)	521, 761
BshFI	GGCC	4 cut(s)	355, 399, 512, 518
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	4 cut(s)	190, 267, 268, 485
BsmAI	GTCTC	2 cut(s)	130, 682
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	4 cut(s)	355, 399, 512, 518
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	464
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	7 cut(s)	61, 205, 244, 309, 312, 519, 601
BspANI	GGCC	4 cut(s)	355, 399, 512, 518
BspCNI	CTCAG	5 cut(s)	134, 140, 268, 430, 713
BspEI	TCCGGA	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	272, 273, 477
BspMAI	CTGCAG	1 cut(s)	550
BsrBI	CCGCTC	1 cut(s)	601
BsrDI	GCAATG	1 cut(s)	891
BssECI	CCNNGG	2 cut(s)	12, 513
BssNI	GRCGYC	2 cut(s)	177, 222
BssT1I	CCWWGG	2 cut(s)	12, 513
Bst2UI	CCWGG	2 cut(s)	486, 806
Bst4CI	ACNGT	2 cut(s)	472, 731
Bst6I	CTCTTC	1 cut(s)	426
BstACI	GRCGYC	2 cut(s)	177, 222
BstC8I	GCNNGC	2 cut(s)	317, 534
BstDEI	CTNAG	6 cut(s)	121, 127, 255, 438, 555, 700
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	3 cut(s)	180, 511, 771
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	2 cut(s)	130, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	325, 518, 758, 893
BstNI	CCWGG	2 cut(s)	486, 806
BstSCI	CCNGG	2 cut(s)	484, 804
BstSFI	CTRYAG	3 cut(s)	546, 743, 795
BstV1I	GCAGC	3 cut(s)	233, 560, 761
BstV2I	GAAGAC	1 cut(s)	393
BsuRI	GGCC	4 cut(s)	355, 399, 512, 518
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	180, 511, 771
BtsIMutI	CAGTG	1 cut(s)	736
Cac8I	GCNNGC	2 cut(s)	317, 534
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	271, 397
CseI	GACGC	2 cut(s)	166, 230
Csp6I	GTAC	2 cut(s)	334, 445
CviAII	CATG	2 cut(s)	13, 771
CviQI	GTAC	2 cut(s)	334, 445
DdeI	CTNAG	6 cut(s)	121, 127, 255, 438, 555, 700
DraI	TTTAAA	1 cut(s)	814
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	12, 513
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	407
Eco88I	CYCGRG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	484, 804
EcoT14I	CCWWGG	2 cut(s)	12, 513
ErhI	CCWWGG	2 cut(s)	12, 513
FaeI	CATG	2 cut(s)	16, 774
FaiI	YATR	8 cut(s)	14, 569, 574, 590, 772, 786, 832, 851
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	12, 770
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	6 cut(s)	247, 310, 313, 519, 549, 750
FokI	GGATG	3 cut(s)	167, 518, 778
Fsp4HI	GCNGC	6 cut(s)	247, 310, 313, 519, 549, 750
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	6 cut(s)	247, 310, 313, 519, 549, 750
GsaI	CCCAGC	2 cut(s)	525, 765
GsuI	CTGGAG	2 cut(s)	278, 366
HaeIII	GGCC	4 cut(s)	355, 399, 512, 518
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	2 cut(s)	166, 230
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	2 cut(s)	177, 222
Hin1II	CATG	2 cut(s)	16, 774
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	2 cut(s)	188, 690
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	3 cut(s)	74, 193, 258
Hpy188III	TCNNGA	8 cut(s)	295, 373, 383, 425, 465, 578, 614, 836
Hpy8I	GTNNAC	1 cut(s)	363
Hpy99I	CGWCG	4 cut(s)	108, 176, 224, 361
HpyAV	CCTTC	5 cut(s)	39, 74, 235, 637, 672
HpyCH4III	ACNGT	2 cut(s)	472, 731
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	202, 548, 821
HpyF10VI	GCNNNNNNNGC	4 cut(s)	325, 518, 758, 893
HpyF3I	CTNAG	6 cut(s)	121, 127, 255, 438, 555, 700
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	2 cut(s)	177, 222
Hsp92II	CATG	2 cut(s)	16, 774
HspAI	GCGC	1 cut(s)	5
KflI	GGGWCCC	1 cut(s)	271
Kpn2I	TCCGGA	1 cut(s)	464
LmnI	GCTCC	3 cut(s)	193, 254, 297
Lsp1109I	GCAGC	3 cut(s)	233, 560, 761
LweI	GCATC	1 cut(s)	808
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	2 cut(s)	845, 873
MbiI	CCGCTC	1 cut(s)	601
MboII	GAAGA	4 cut(s)	126, 398, 413, 783
MfeI	CAATTG	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	4 cut(s)	265, 453, 869, 898
MlyI	GAGTC	2 cut(s)	197, 684
MmeI	TCCRAC	1 cut(s)	171
MroI	TCCGGA	1 cut(s)	464
MseI	TTAA	3 cut(s)	339, 500, 813
MspA1I	CMGCKG	3 cut(s)	246, 521, 800
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	486, 806
MunI	CAATTG	1 cut(s)	265
MvaI	CCWGG	2 cut(s)	486, 806
MwoI	GCNNNNNNNGC	4 cut(s)	325, 518, 758, 893
NcoI	CCATGG	1 cut(s)	12
NlaIII	CATG	2 cut(s)	16, 774
NlaIV	GGNNCC	3 cut(s)	272, 273, 477
NmeAIII	GCCGAG	1 cut(s)	425
PaeR7I	CTCGAG	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	176
PkrI	GCNGC	6 cut(s)	248, 311, 314, 520, 550, 751
PleI	GAGTC	2 cut(s)	196, 684
PpsI	GAGTC	2 cut(s)	196, 684
PpuMI	RGGWCCY	1 cut(s)	271
PshBI	ATTAAT	1 cut(s)	500
Psp5II	RGGWCCY	1 cut(s)	271
Psp6I	CCWGG	2 cut(s)	484, 804
PspFI	CCCAGC	2 cut(s)	521, 761
PspGI	CCWGG	2 cut(s)	484, 804
PspN4I	GGNNCC	3 cut(s)	272, 273, 477
PspPI	GGNCC	2 cut(s)	271, 397
PspPPI	RGGWCCY	1 cut(s)	271
PspXI	VCTCGAGB	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	550
PsyI	GACNNNGTC	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	2 cut(s)	335, 446
RsaNI	GTAC	2 cut(s)	334, 445
SaqAI	TTAA	3 cut(s)	339, 500, 813
SatI	GCNGC	6 cut(s)	247, 310, 313, 519, 549, 750
Sau96I	GGNCC	2 cut(s)	271, 397
SchI	GAGTC	2 cut(s)	197, 684
ScrFI	CCNGG	2 cut(s)	486, 806
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	1 cut(s)	808
SfcI	CTRYAG	3 cut(s)	546, 743, 795
Sfr274I	CTCGAG	1 cut(s)	185
SinI	GGWCC	1 cut(s)	271
SlaI	CTCGAG	1 cut(s)	185
SmlI	CTYRAG	2 cut(s)	185, 841
SmoI	CTYRAG	2 cut(s)	185, 841
Sse9I	AATT	4 cut(s)	265, 453, 869, 898
SsiI	CCGC	7 cut(s)	61, 205, 244, 309, 312, 519, 601
StyD4I	CCNGG	2 cut(s)	484, 804
StyI	CCWWGG	2 cut(s)	12, 513
TaaI	ACNGT	2 cut(s)	472, 731
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	4 cut(s)	165, 186, 372, 414
TasI	AATT	4 cut(s)	265, 453, 869, 898
TauI	GCSGC	3 cut(s)	312, 315, 521
Tru1I	TTAA	3 cut(s)	339, 500, 813
Tru9I	TTAA	3 cut(s)	339, 500, 813
TscAI	CASTG	1 cut(s)	736
TseI	GCWGC	3 cut(s)	246, 548, 749
TspRI	CASTG	1 cut(s)	736
Tth111I	GACNNNGTC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	500
XhoI	CTCGAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.