Rmu_sc0021298.1_g000001

Mediator-associated protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021298.1
Physical Location & Seq
Reverse (-)
1 .. 1260
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021298.1_g000001.1.cds

Sequence Viewer

Length: 1253 bp
atggcccccgaccaagacgacgccgttctccccgagggcgacctctcctcctcctcccaagacgacgaggaagaagacgtcgacgttgacgaggacgaggacgacgacgtcgacgacgacgatgacgtcatcaactccgcctctccttcctccacctccaattccctccccgtcgccatagccaccgctgctcccaccgtcaccgtcgcgctcccggctccgcacgccaccaccgcgccggcgacgaccacgacgacggccgtgatttccgagggtctggatccgaagaggccgcggacaattcagtacgacccggtcttgctgccgctggcggcgcccgaggagaagaagccggcggcggcgctggacgactcgaggaggctgttccagcggctgtggacggacgaggacgagatcgagctgctgcaagggtttctggactacacgacgcagagagggaacaaaggcgggtcgcaccaaaacgacaccgctttgttctacgatcagatcaagtcgaagctccagctggaattcaacaagaaccagctggtggagaagctccggcgcctgaagaagaagtaccggaatgttctcaacaaaatcgccagcggcaaagaggtcagcttcaagagccctcacgatcaggccaccttcgagatctccaggaagatatggagcaacatcggccgtatcggagttgctggcgccgacgacaacgacgacgaagaccctaaccctaaccctaacaatcccaatttcaaccatttcgagatcaagacggaagaggccgccggatttcagaagtccacaccgaaatcgcggaagcggcagcggacgccggcgcagccgaaaacgccgagtttcgtcgagccggcggtgccggtgatcaaagagaatcatcacaatgtgaacaatggcggtggcgttggtggtggtggtggtggtgggagtaattgtggaaattgtaatgttcaggggatgattgaggagacggtgaagagttgtttgtctcctgtgttgagggagttgatgagcagttcaatgggtggaggagggccgtctagagggtttggagggctgtcgttgaatccgattccgctgagctttggcggtccttcgatgagtttgaattttgggggtggggaagcggcggatgagcagtggaggaagcagcagattttggagttggaggtgtattcgaagcgattggagttggtgcagaatcagataaaagtggcattggatgagttgcg

Protein Analysis

418

Amino Acids

45.3

Weight (kDa)

4.75

Isoelectric Point (pI)

57.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017098)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 107, 125
AatII GACGTC 3 cut(s) 81, 111, 129
AccB1I GGYRCC 4 cut(s) 334, 564, 704, 877
AccB7I CCANNNNNTGG 1 cut(s) 550
AccI GTMKAC 2 cut(s) 81, 111
AccII CGCG 4 cut(s) 209, 236, 295, 820
AclWI GGATC 2 cut(s) 275, 288
AcoI YGGCCR 2 cut(s) 258, 685
AcsI RAATTY 2 cut(s) 530, 1129
AcuI CTGAAG 1 cut(s) 590
AcyI GRCGYC 8 cut(s) 21, 78, 108, 126, 335, 565, 705, 836
AdeI CACNNNGTG 1 cut(s) 907
AfaI GTAC 2 cut(s) 308, 581
AfiI CCNNNNNNNGG 2 cut(s) 550, 1064
AgsI TTSAA 6 cut(s) 535, 628, 760, 1041, 1087, 1129
AjnI CCWGG 1 cut(s) 662
AluBI AGCT 7 cut(s) 421, 520, 526, 547, 559, 624, 1104
AluI AGCT 7 cut(s) 421, 520, 526, 547, 559, 624, 1104
Alw26I GTCTC 2 cut(s) 983, 1014
AlwI GGATC 2 cut(s) 275, 288
AlwNI CAGNNNCTG 1 cut(s) 394
Ama87I CYCGRG 3 cut(s) 32, 338, 373
AoxI GGCC 7 cut(s) 3, 258, 290, 645, 685, 786, 1055
ApeKI GCWGC 7 cut(s) 188, 322, 421, 424, 829, 844, 1171
ApoI RAATTY 2 cut(s) 530, 1129
AspLEI GCGC 7 cut(s) 211, 238, 337, 364, 567, 707, 844
AspS9I GGNCC 3 cut(s) 4, 1055, 1112
AsuC2I CCSGG 2 cut(s) 215, 314
AsuHPI GGTGA 3 cut(s) 193, 895, 1006
AsuII TTCGAA 1 cut(s) 1199
AvaI CYCGRG 3 cut(s) 32, 338, 373
AvaII GGWCC 1 cut(s) 1112
BamHI GGATCC 1 cut(s) 280
BanI GGYRCC 4 cut(s) 334, 564, 704, 877
BanII GRGCYC 1 cut(s) 635
BarI GAAGNNNNNNTAC 2 cut(s) 563, 595
BbsI GAAGAC 2 cut(s) 81, 732
BbvI GCAGC 7 cut(s) 175, 309, 408, 411, 841, 856, 1183
BceAI ACGGC 5 cut(s) 8, 245, 273, 672, 1042
BciT130I CCWGG 1 cut(s) 664
BclI TGATCA 1 cut(s) 885
BcnI CCSGG 2 cut(s) 215, 314
BcoDI GTCTC 2 cut(s) 983, 1014
BfaI CTAG 1 cut(s) 1062
BfoI RGCGCY 4 cut(s) 338, 365, 568, 708
BglII AGATCT 1 cut(s) 657
BlpI GCTNAGC 1 cut(s) 1100
Bme1390I CCNGG 3 cut(s) 215, 314, 664
Bme18I GGWCC 1 cut(s) 1112
BmeT110I CYCGRG 3 cut(s) 32, 338, 373
BmgT120I GGNCC 3 cut(s) 4, 1055, 1112
BmiI GGNNCC 7 cut(s) 6, 219, 282, 336, 566, 706, 879
BmrFI CCNGG 3 cut(s) 215, 314, 664
BpiI GAAGAC 2 cut(s) 81, 732
BpmI CTGGAG 2 cut(s) 506, 646
Bpu1102I GCTNAGC 1 cut(s) 1100
Bpu14I TTCGAA 1 cut(s) 1199
BpuMI CCSGG 2 cut(s) 215, 314
BsaHI GRCGYC 8 cut(s) 21, 78, 108, 126, 335, 565, 705, 836
BsaJI CCNNGG 4 cut(s) 33, 270, 293, 339
BsaWI WCCGGW 1 cut(s) 582
BsaXI ACNNNNNCTCC 6 cut(s) 32, 62, 175, 205, 940, 970
Bsc4I CCNNNNNNNGG 2 cut(s) 550, 1064
Bse118I RCCGGY 5 cut(s) 238, 352, 838, 871, 880
BseBI CCWGG 1 cut(s) 664
BseDI CCNNGG 4 cut(s) 33, 270, 293, 339
BseGI GGATG 3 cut(s) 984, 1159, 1249
BseLI CCNNNNNNNGG 2 cut(s) 550, 1064
BseMII CTCAG 1 cut(s) 1091
BseRI GAGGAG 7 cut(s) 37, 40, 43, 356, 391, 1001, 1065
BseX3I CGGCCG 2 cut(s) 258, 685
BseXI GCAGC 7 cut(s) 175, 309, 408, 411, 841, 856, 1183
BsgI GTGCAG 1 cut(s) 1238
Bsh1236I CGCG 4 cut(s) 209, 236, 295, 820
Bsh1285I CGRYCG 2 cut(s) 261, 688
BshFI GGCC 7 cut(s) 5, 260, 292, 647, 687, 788, 1057
BshNI GGYRCC 4 cut(s) 334, 564, 704, 877
BsiEI CGRYCG 2 cut(s) 261, 688
BsiHKCI CYCGRG 3 cut(s) 32, 338, 373
BslI CCNNNNNNNGG 2 cut(s) 550, 1064
BsmAI GTCTC 2 cut(s) 983, 1014
BsmBI CGTCTC 1 cut(s) 983
BsnI GGCC 7 cut(s) 5, 260, 292, 647, 687, 788, 1057
BsoBI CYCGRG 3 cut(s) 32, 338, 373
Bsp119I TTCGAA 1 cut(s) 1199
Bsp1286I GDGCHC 1 cut(s) 635
Bsp143I GATC 8 cut(s) 280, 414, 502, 507, 640, 657, 771, 885
Bsp1720I GCTNAGC 1 cut(s) 1100
BspANI GGCC 7 cut(s) 5, 260, 292, 647, 687, 788, 1057
BspCNI CTCAG 1 cut(s) 1092
BspFNI CGCG 4 cut(s) 209, 236, 295, 820
BspLI GGNNCC 7 cut(s) 6, 219, 282, 336, 566, 706, 879
BspPI GGATC 2 cut(s) 275, 288
BspT104I TTCGAA 1 cut(s) 1199
BspT107I GGYRCC 4 cut(s) 334, 564, 704, 877
BsrFI RCCGGY 5 cut(s) 238, 352, 838, 871, 880
BssAI RCCGGY 5 cut(s) 238, 352, 838, 871, 880
BssECI CCNNGG 4 cut(s) 33, 270, 293, 339
BssMI GATC 8 cut(s) 280, 414, 502, 507, 640, 657, 771, 885
BssNI GRCGYC 8 cut(s) 21, 78, 108, 126, 335, 565, 705, 836
Bst2UI CCWGG 1 cut(s) 664
Bst4CI ACNGT 3 cut(s) 199, 205, 994
Bst6I CTCTTC 3 cut(s) 281, 777, 992
BstACI GRCGYC 8 cut(s) 21, 78, 108, 126, 335, 565, 705, 836
BstBI TTCGAA 1 cut(s) 1199
BstC8I GCNNGC 8 cut(s) 225, 240, 330, 354, 607, 703, 840, 873
BstDEI CTNAG 1 cut(s) 1100
BstDSI CCRYGG 1 cut(s) 293
BstF5I GGATG 3 cut(s) 984, 1159, 1249
BstFNI CGCG 4 cut(s) 209, 236, 295, 820
BstH2I RGCGCY 4 cut(s) 338, 365, 568, 708
BstHHI GCGC 7 cut(s) 211, 238, 337, 364, 567, 707, 844
BstKTI GATC 8 cut(s) 283, 417, 505, 510, 643, 660, 774, 888
BstMAI GTCTC 2 cut(s) 983, 1014
BstMBI GATC 8 cut(s) 280, 414, 502, 507, 640, 657, 771, 885
BstMCI CGRYCG 2 cut(s) 261, 688
BstNI CCWGG 1 cut(s) 664
BstSCI CCNGG 3 cut(s) 213, 312, 662
BstUI CGCG 4 cut(s) 209, 236, 295, 820
BstV1I GCAGC 7 cut(s) 175, 309, 408, 411, 841, 856, 1183
BstV2I GAAGAC 2 cut(s) 81, 732
BstX2I RGATCY 2 cut(s) 280, 657
BstYI RGATCY 2 cut(s) 280, 657
BstZI CGGCCG 2 cut(s) 258, 685
BsuRI GGCC 7 cut(s) 5, 260, 292, 647, 687, 788, 1057
BtgI CCRYGG 1 cut(s) 293
BtsCI GGATG 3 cut(s) 984, 1159, 1249
BtsI GCAGTG 1 cut(s) 1166
BtsIMutI CAGTG 1 cut(s) 1166
Cac8I GCNNGC 8 cut(s) 225, 240, 330, 354, 607, 703, 840, 873
CaiI CAGNNNCTG 1 cut(s) 394
CfoI GCGC 7 cut(s) 211, 238, 337, 364, 567, 707, 844
Cfr10I RCCGGY 5 cut(s) 238, 352, 838, 871, 880
Cfr13I GGNCC 3 cut(s) 4, 1055, 1112
Cfr42I CCGCGG 1 cut(s) 296
CseI GACGC 3 cut(s) 29, 457, 844
Csp6I GTAC 2 cut(s) 307, 580
CspCI CAANNNNNGTGG 2 cut(s) 901, 936
CviQI GTAC 2 cut(s) 307, 580
DdeI CTNAG 1 cut(s) 1100
DinI GGCGCC 3 cut(s) 336, 566, 706
DpnI GATC 8 cut(s) 282, 416, 504, 509, 642, 659, 773, 887
DpnII GATC 8 cut(s) 280, 414, 502, 507, 640, 657, 771, 885
DraIII CACNNNGTG 1 cut(s) 907
DrdI GACNNNNNNGTC 2 cut(s) 107, 125
DseDI GACNNNNNNGTC 2 cut(s) 107, 125
EaeI YGGCCR 2 cut(s) 258, 685
EagI CGGCCG 2 cut(s) 258, 685
Eam1104I CTCTTC 3 cut(s) 281, 777, 992
EarI CTCTTC 3 cut(s) 281, 777, 992
EciI GGCGGA 2 cut(s) 127, 1166
EclXI CGGCCG 2 cut(s) 258, 685
Eco24I GRGCYC 1 cut(s) 635
Eco47I GGWCC 1 cut(s) 1112
Eco52I CGGCCG 2 cut(s) 258, 685
Eco57I CTGAAG 1 cut(s) 590
Eco88I CYCGRG 3 cut(s) 32, 338, 373
EcoRI GAATTC 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 662
EcoT38I GRGCYC 1 cut(s) 635
EgeI GGCGCC 3 cut(s) 336, 566, 706
EheI GGCGCC 3 cut(s) 336, 566, 706
Esp3I CGTCTC 1 cut(s) 983
FaiI YATR 2 cut(s) 179, 673
FauI CCCGC 1 cut(s) 461
FbaI TGATCA 1 cut(s) 885
FblI GTMKAC 2 cut(s) 81, 111
FokI GGATG 2 cut(s) 991, 1166
FriOI GRGCYC 1 cut(s) 635
FspBI CTAG 1 cut(s) 1062
GlaI GCGC 7 cut(s) 210, 237, 336, 363, 566, 706, 843
GsuI CTGGAG 2 cut(s) 506, 646
HaeII RGCGCY 4 cut(s) 338, 365, 568, 708
HaeIII GGCC 7 cut(s) 5, 260, 292, 647, 687, 788, 1057
HgaI GACGC 3 cut(s) 29, 457, 844
HhaI GCGC 7 cut(s) 211, 238, 337, 364, 567, 707, 844
Hin1I GRCGYC 8 cut(s) 21, 78, 108, 126, 335, 565, 705, 836
Hin6I GCGC 7 cut(s) 209, 236, 335, 362, 565, 705, 842
HinP1I GCGC 7 cut(s) 209, 236, 335, 362, 565, 705, 842
HincII GTYRAC 3 cut(s) 82, 88, 112
HindII GTYRAC 3 cut(s) 82, 88, 112
HinfI GANTC 5 cut(s) 371, 895, 1087, 1093, 1222
HphI GGTGA 3 cut(s) 193, 895, 1006
Hpy166II GTNNAC 6 cut(s) 82, 88, 112, 399, 807, 910
Hpy188I TCNGA 7 cut(s) 271, 285, 507, 695, 801, 1092, 1227
Hpy188III TCNNGA 8 cut(s) 278, 437, 628, 638, 655, 769, 775, 1062
Hpy8I GTNNAC 6 cut(s) 82, 88, 112, 399, 807, 910
HpyAV CCTTC 3 cut(s) 156, 661, 1125
HpyCH4III ACNGT 3 cut(s) 199, 205, 994
HpyCH4IV ACGT 4 cut(s) 78, 84, 108, 126
HpyCH4V TGCA 2 cut(s) 427, 1219
HpyF3I CTNAG 1 cut(s) 1100
HpySE526I ACGT 4 cut(s) 78, 84, 108, 126
Hsp92I GRCGYC 8 cut(s) 21, 78, 108, 126, 335, 565, 705, 836
HspAI GCGC 7 cut(s) 209, 236, 335, 362, 565, 705, 842
KasI GGCGCC 3 cut(s) 334, 564, 704
KroI GCCGGC 4 cut(s) 238, 352, 838, 871
KroNI GCCGGC 4 cut(s) 240, 354, 840, 873
Ksp22I TGATCA 1 cut(s) 885
KspI CCGCGG 1 cut(s) 296
Kzo9I GATC 8 cut(s) 280, 414, 502, 507, 640, 657, 771, 885
LmnI GCTCC 6 cut(s) 196, 216, 223, 525, 564, 675
Lsp1109I GCAGC 7 cut(s) 175, 309, 408, 411, 841, 856, 1183
MaeI CTAG 1 cut(s) 1062
MaeII ACGT 4 cut(s) 78, 84, 108, 126
MaeIII GTNAC 1 cut(s) 199
MalI GATC 8 cut(s) 282, 416, 504, 509, 642, 659, 773, 887
MboI GATC 8 cut(s) 280, 414, 502, 507, 640, 657, 771, 885
MflI RGATCY 2 cut(s) 280, 657
MhlI GDGCHC 1 cut(s) 635
MluCI AATT 7 cut(s) 160, 300, 530, 754, 952, 961, 1129
Mly113I GGCGCC 3 cut(s) 335, 565, 705
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 1167
MreI CGCCGGCG 2 cut(s) 238, 838
MroNI GCCGGC 4 cut(s) 238, 352, 838, 871
MslI CAYNNNNRTG 1 cut(s) 903
MspA1I CMGCKG 9 cut(s) 188, 295, 328, 391, 526, 547, 609, 832, 1099
MspR9I CCNGG 3 cut(s) 215, 314, 664
MvaI CCWGG 1 cut(s) 664
MvnI CGCG 4 cut(s) 209, 236, 295, 820
NaeI GCCGGC 4 cut(s) 240, 354, 840, 873
NarI GGCGCC 3 cut(s) 335, 565, 705
NciI CCSGG 2 cut(s) 215, 314
NdeII GATC 8 cut(s) 280, 414, 502, 507, 640, 657, 771, 885
NgoMIV GCCGGC 4 cut(s) 238, 352, 838, 871
NlaIV GGNNCC 7 cut(s) 6, 219, 282, 336, 566, 706, 879
NmeAIII GCCGAG 1 cut(s) 882
NmuCI GTSAC 1 cut(s) 199
NspV TTCGAA 1 cut(s) 1199
PaeR7I CTCGAG 1 cut(s) 373
PdiI GCCGGC 4 cut(s) 240, 354, 840, 873
PfeI GAWTC 4 cut(s) 895, 1087, 1093, 1222
PflFI GACNNNGTC 2 cut(s) 107, 314
PflMI CCANNNNNTGG 1 cut(s) 550
PfoI TCCNGGA 1 cut(s) 662
PleI GAGTC 1 cut(s) 365
PluTI GGCGCC 3 cut(s) 338, 568, 708
PpsI GAGTC 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 662
PspGI CCWGG 1 cut(s) 662
PspN4I GGNNCC 7 cut(s) 6, 219, 282, 336, 566, 706, 879
PspPI GGNCC 3 cut(s) 4, 1055, 1112
PspXI VCTCGAGB 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 394
PsuI RGATCY 2 cut(s) 280, 657
PsyI GACNNNGTC 2 cut(s) 107, 314
PvuII CAGCTG 2 cut(s) 526, 547
RsaI GTAC 2 cut(s) 308, 581
RsaNI GTAC 2 cut(s) 307, 580
RseI CAYNNNNRTG 1 cut(s) 903
SacII CCGCGG 1 cut(s) 296
SalI GTCGAC 2 cut(s) 80, 110
Sau3AI GATC 8 cut(s) 280, 414, 502, 507, 640, 657, 771, 885
Sau96I GGNCC 3 cut(s) 4, 1055, 1112
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 3 cut(s) 215, 314, 664
SduI GDGCHC 1 cut(s) 635
SfoI GGCGCC 3 cut(s) 336, 566, 706
Sfr274I CTCGAG 1 cut(s) 373
Sfr303I CCGCGG 1 cut(s) 296
SfuI TTCGAA 1 cut(s) 1199
SgrAI CRCCGGYG 2 cut(s) 238, 838
SgrBI CCGCGG 1 cut(s) 296
SgrDI CGTCGACG 2 cut(s) 80, 110
SinI GGWCC 1 cut(s) 1112
SlaI CTCGAG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 903
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 7 cut(s) 160, 300, 530, 754, 952, 961, 1129
SspDI GGCGCC 3 cut(s) 334, 564, 704
SspMI CTAG 1 cut(s) 1062
StyD4I CCNGG 3 cut(s) 213, 312, 662
TaaI ACNGT 3 cut(s) 199, 205, 994
TaiI ACGT 4 cut(s) 81, 87, 111, 129
TasI AATT 7 cut(s) 160, 300, 530, 754, 952, 961, 1129
TfiI GAWTC 4 cut(s) 895, 1087, 1093, 1222
TscAI CASTG 1 cut(s) 1166
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 7 cut(s) 188, 322, 421, 424, 829, 844, 1171
Tsp45I GTSAC 1 cut(s) 199
TspGWI ACGGA 2 cut(s) 416, 794
TspRI CASTG 1 cut(s) 1166
Tth111I GACNNNGTC 2 cut(s) 107, 314
Van91I CCANNNNNTGG 1 cut(s) 550
VpaK11BI GGWCC 1 cut(s) 1112
XapI RAATTY 2 cut(s) 530, 1129
XbaI TCTAGA 1 cut(s) 1061
XhoI CTCGAG 1 cut(s) 373
XmiI GTMKAC 2 cut(s) 81, 111
XspI CTAG 1 cut(s) 1062
ZraI GACGTC 3 cut(s) 79, 109, 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.