Rmu_sc0022491.1_g000001

SET and MYND domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022491.1
Physical Location & Seq
Reverse (-)
1 .. 3024
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022491.1_g000001.1.cds

Sequence Viewer

Length: 1495 bp
atgaaattacaatgtgttaccacacccgagaaaggaaagggtttggcttccacggtggacattcctcaagcatccttggtacattccgaagacccttttgcaacgataatattaaagcattgccgggaaacacattgccactactgcttgaatgaactaccagcagataaagtcccatgtacatcatgttcaataccatggtattgctcccagaaatgctgtatagaggcaggaggagaaatgtgctgcgattacccaaacaatcaaagcattcataagtatctaccagacgaccttcagaagtacatcgtggaggccactttaattgctgattctgaaagagataatcagatttctgaacataagcatgagtgtaaaggtgtaccctggccagcagtattgccttctgagatagttttggctggtcgagtactagtcaactctataatcaaaagaggaggttccacagatagtattaatctcggagaaatttcggatctttctcatcattattcaaaaatgcctccggaatcgaaattggaattacatatattctctgctgtattatcatgctgtctgcatcattgtaatggctttgaaataccaataaacgggatctccatttcacagattgttatacttatatcccaaattagggtgaactctatgacagttgttcgtatgaaatacattgaccagcatgaactagcagatcagtttggaaatctgtcatcttgggaaggaggtccaaccagtaatgtggaacaggtcagagtaggtcaagctatctatgcatcaggaagcttgttcaaccattcttgtcgacctaacatccatgcttatttcctttcacgcactcttcatatacgaactacagaatatgtctcagcagggtgtccccttgagttgtcctatggtccacaggttgggcagtgggattgtaaggacaggattaagtttctggaagatgagtactcatttcgatgtcagtgcaccggttgttcaaaaatgaacttttcagacttagtgctaaatgcatttcactgtgtgaagctgaactgttctggcatagtcttggagagctctgttattaactgtgaaaaagagaaacttaagcacttaccgaacatcatcaacactgacagcatcgtctctcttcttcaggctgaagagctcaatattgatgacatcaataaagctgcaaatgaaatgcaaatcaatagcttttaccagttaaatcctggctactgtctaaaatgtggttcttatcgtgatctagaatcttcctctgtagctgcaaataactgtatcagaagattacagaattccatagactcaaaaaatgtctctagtaccatgcttttgggtgctttaagttctcttggtgtgctgagatcaactttgcatgcatataatagaagaattgcagaggcagaagataatcttgcacaagcattttgtttggtcggagagttgcaacctgcaatggagcact
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

498

Amino Acids

55.34

Weight (kDa)

5.85

Isoelectric Point (pI)

47.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1148
Acc36I ACCTGC 1 cut(s) 1489
AccB7I CCANNNNNTGG 1 cut(s) 926
AccI GTMKAC 1 cut(s) 823
AccIII TCCGGA 1 cut(s) 526
AclWI GGATC 2 cut(s) 504, 623
AcoI YGGCCR 1 cut(s) 389
AcsI RAATTY 2 cut(s) 489, 1324
AcuI CTGAAG 3 cut(s) 281, 1145, 1188
AdeI CACNNNGTG 1 cut(s) 1048
AfaI GTAC 7 cut(s) 81, 181, 305, 384, 432, 974, 1354
AfiI CCNNNNNNNGG 5 cut(s) 32, 611, 654, 655, 926
AflII CTTAAG 1 cut(s) 1112
AgeI ACCGGT 1 cut(s) 995
AgsI TTSAA 6 cut(s) 151, 192, 516, 599, 811, 1005
AhlI ACTAGT 1 cut(s) 433
AjnI CCWGG 2 cut(s) 386, 1240
AluBI AGCT 8 cut(s) 785, 804, 1054, 1083, 1174, 1199, 1224, 1295
AluI AGCT 8 cut(s) 785, 804, 1054, 1083, 1174, 1199, 1224, 1295
Alw21I GWGCWC 4 cut(s) 995, 1085, 1176, 1494
Alw26I GTCTC 3 cut(s) 889, 1156, 1351
Alw44I GTGCAC 1 cut(s) 991
AlwI GGATC 2 cut(s) 504, 623
Ama87I CYCGRG 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 526
AoxI GGCC 2 cut(s) 315, 389
ApaLI GTGCAC 1 cut(s) 991
ApeKI GCWGC 3 cut(s) 246, 1199, 1295
ApoI RAATTY 2 cut(s) 489, 1324
AseI ATTAAT 1 cut(s) 477
AsiGI ACCGGT 1 cut(s) 995
AspS9I GGNCC 2 cut(s) 746, 917
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 670
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 2 cut(s) 746, 917
BaeGI GKGCMC 1 cut(s) 995
BalI TGGCCA 1 cut(s) 391
BanII GRGCYC 2 cut(s) 1085, 1176
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 4 cut(s) 995, 1085, 1176, 1494
BbvI GCAGC 3 cut(s) 233, 1186, 1282
BcgI CGANNNNNNTGC 2 cut(s) 972, 1006
BciT130I CCWGG 2 cut(s) 388, 1242
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 3 cut(s) 889, 1156, 1351
BcuI ACTAGT 1 cut(s) 433
BfaI CTAG 4 cut(s) 434, 707, 1277, 1350
BfmI CTRYAG 2 cut(s) 873, 1290
BfrI CTTAAG 1 cut(s) 1112
BfuAI ACCTGC 1 cut(s) 1489
BisI GCNGC 3 cut(s) 247, 1200, 1296
BlsI GCNGC 3 cut(s) 248, 1201, 1297
BmcAI AGTACT 2 cut(s) 432, 974
Bme1390I CCNGG 3 cut(s) 125, 388, 1242
Bme18I GGWCC 2 cut(s) 746, 917
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 746, 917
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 3 cut(s) 125, 388, 1242
BmsI GCATC 4 cut(s) 80, 589, 803, 1155
BpiI GAAGAC 1 cut(s) 96
BpuEI CTTGAG 2 cut(s) 51, 923
BpuMI CCSGG 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 51, 75, 197, 386
BsaWI WCCGGW 2 cut(s) 526, 995
BsaXI ACNNNNNCTCC 2 cut(s) 602, 632
Bsc4I CCNNNNNNNGG 5 cut(s) 32, 611, 654, 655, 926
Bse118I RCCGGY 1 cut(s) 995
Bse1I ACTGG 2 cut(s) 753, 1231
Bse3DI GCAATG 3 cut(s) 118, 133, 1491
BseAI TCCGGA 1 cut(s) 526
BseBI CCWGG 2 cut(s) 388, 1242
BseDI CCNNGG 4 cut(s) 51, 75, 197, 386
BseGI GGATG 2 cut(s) 71, 831
BseLI CCNNNNNNNGG 5 cut(s) 32, 611, 654, 655, 926
BseMI GCAATG 3 cut(s) 118, 133, 1491
BseMII CTCAG 3 cut(s) 399, 900, 1382
BseNI ACTGG 2 cut(s) 753, 1231
BseRI GAGGAG 2 cut(s) 249, 471
BseSI GKGCMC 1 cut(s) 995
BseXI GCAGC 3 cut(s) 233, 1186, 1282
BshFI GGCC 2 cut(s) 317, 391
BshTI ACCGGT 1 cut(s) 995
BsiHKAI GWGCWC 4 cut(s) 995, 1085, 1176, 1494
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 124, 527, 996
BslFI GGGAC 2 cut(s) 158, 882
BslI CCNNNNNNNGG 5 cut(s) 32, 611, 654, 655, 926
BsmAI GTCTC 3 cut(s) 889, 1156, 1351
BsmBI CGTCTC 1 cut(s) 1156
BsmFI GGGAC 2 cut(s) 158, 882
BsmI GAATGC 1 cut(s) 270
BsnI GGCC 2 cut(s) 317, 391
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 4 cut(s) 995, 1085, 1176, 1494
Bsp13I TCCGGA 1 cut(s) 526
Bsp1407I TGTACA 1 cut(s) 179
Bsp143I GATC 5 cut(s) 496, 615, 712, 1273, 1394
Bsp19I CCATGG 1 cut(s) 197
BspANI GGCC 2 cut(s) 317, 391
BspCNI CTCAG 3 cut(s) 400, 899, 1383
BspEI TCCGGA 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 463
BspMI ACCTGC 1 cut(s) 1489
BspPI GGATC 2 cut(s) 504, 623
BspQI GCTCTTC 1 cut(s) 1164
BspTI CTTAAG 1 cut(s) 1112
BsrDI GCAATG 3 cut(s) 118, 133, 1491
BsrFI RCCGGY 1 cut(s) 995
BsrGI TGTACA 1 cut(s) 179
BsrI ACTGG 2 cut(s) 753, 1231
BssAI RCCGGY 1 cut(s) 995
BssECI CCNNGG 4 cut(s) 51, 75, 197, 386
BssMI GATC 5 cut(s) 496, 615, 712, 1273, 1394
BssT1I CCWWGG 2 cut(s) 75, 197
Bst2UI CCWGG 2 cut(s) 388, 1242
Bst4CI ACNGT 7 cut(s) 55, 673, 1046, 1061, 1097, 1250, 1307
Bst6I CTCTTC 3 cut(s) 864, 1161, 1164
BstAFI CTTAAG 1 cut(s) 1112
BstAUI TGTACA 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 393, 1407
BstDEI CTNAG 4 cut(s) 408, 886, 1024, 1391
BstDSI CCRYGG 2 cut(s) 51, 197
BstF5I GGATG 2 cut(s) 71, 831
BstKTI GATC 5 cut(s) 499, 618, 715, 1276, 1397
BstMAI GTCTC 3 cut(s) 889, 1156, 1351
BstMBI GATC 5 cut(s) 496, 615, 712, 1273, 1394
BstMWI GCNNNNNNNGC 2 cut(s) 144, 791
BstNI CCWGG 2 cut(s) 388, 1242
BstNSI RCATGY 1 cut(s) 1409
BstSCI CCNGG 3 cut(s) 123, 386, 1240
BstSFI CTRYAG 2 cut(s) 873, 1290
BstSLI GKGCMC 1 cut(s) 995
BstV1I GCAGC 3 cut(s) 233, 1186, 1282
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 2 cut(s) 496, 615
BstXI CCANNNNNNTGG 2 cut(s) 760, 1363
BstYI RGATCY 2 cut(s) 496, 615
BsuRI GGCC 2 cut(s) 317, 391
BtgI CCRYGG 2 cut(s) 51, 197
BtsCI GGATG 2 cut(s) 71, 831
BtsI GCAGTG 1 cut(s) 938
BtsIMutI CAGTG 4 cut(s) 938, 995, 1042, 1137
BveI ACCTGC 1 cut(s) 1489
Cac8I GCNNGC 2 cut(s) 393, 1407
Cfr10I RCCGGY 1 cut(s) 995
Cfr13I GGNCC 2 cut(s) 746, 917
Csp6I GTAC 7 cut(s) 80, 180, 304, 383, 431, 973, 1353
CspAI ACCGGT 1 cut(s) 995
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 9 cut(s) 177, 186, 198, 368, 570, 701, 836, 1357, 1406
CviQI GTAC 7 cut(s) 80, 180, 304, 383, 431, 973, 1353
DdeI CTNAG 4 cut(s) 408, 886, 1024, 1391
DpnI GATC 5 cut(s) 498, 617, 714, 1275, 1396
DpnII GATC 5 cut(s) 496, 615, 712, 1273, 1394
DraIII CACNNNGTG 1 cut(s) 1048
DrdI GACNNNNNNGTC 1 cut(s) 1148
DseDI GACNNNNNNGTC 1 cut(s) 1148
EaeI YGGCCR 1 cut(s) 389
Eam1104I CTCTTC 3 cut(s) 864, 1161, 1164
EarI CTCTTC 3 cut(s) 864, 1161, 1164
Ecl136II GAGCTC 2 cut(s) 1083, 1174
Eco130I CCWWGG 2 cut(s) 75, 197
Eco24I GRGCYC 2 cut(s) 1085, 1176
Eco47I GGWCC 2 cut(s) 746, 917
Eco53kI GAGCTC 2 cut(s) 1083, 1174
Eco57I CTGAAG 3 cut(s) 281, 1145, 1188
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 2 cut(s) 1083, 1174
EcoRI GAATTC 1 cut(s) 1324
EcoRII CCWGG 2 cut(s) 386, 1240
EcoT14I CCWWGG 2 cut(s) 75, 197
EcoT22I ATGCAT 3 cut(s) 796, 1039, 1411
EcoT38I GRGCYC 2 cut(s) 1085, 1176
ErhI CCWWGG 2 cut(s) 75, 197
Esp3I CGTCTC 1 cut(s) 1156
FaeI CATG 9 cut(s) 180, 189, 201, 371, 573, 704, 839, 1360, 1409
FalI AAGNNNNNCTT 4 cut(s) 1095, 1127, 1428, 1460
FaqI GGGAC 2 cut(s) 158, 882
FatI CATG 9 cut(s) 176, 185, 197, 367, 569, 700, 835, 1356, 1405
FblI GTMKAC 1 cut(s) 823
Fnu4HI GCNGC 3 cut(s) 247, 1200, 1296
FokI GGATG 2 cut(s) 58, 818
FriOI GRGCYC 2 cut(s) 1085, 1176
Fsp4HI GCNGC 3 cut(s) 247, 1200, 1296
FspBI CTAG 4 cut(s) 434, 707, 1277, 1350
GluI GCNGC 3 cut(s) 247, 1200, 1296
HaeIII GGCC 2 cut(s) 317, 391
HapII CCGG 3 cut(s) 124, 527, 996
Hin1II CATG 9 cut(s) 180, 189, 201, 371, 573, 704, 839, 1360, 1409
HincII GTYRAC 2 cut(s) 439, 824
HindII GTYRAC 2 cut(s) 439, 824
HindIII AAGCTT 1 cut(s) 802
HinfI GANTC 4 cut(s) 332, 530, 1280, 1334
HpaII CCGG 3 cut(s) 124, 527, 996
HphI GGTGA 1 cut(s) 670
Hpy166II GTNNAC 7 cut(s) 58, 383, 439, 661, 824, 920, 993
Hpy188III TCNNGA 5 cut(s) 527, 798, 962, 1271, 1277
Hpy8I GTNNAC 7 cut(s) 58, 383, 439, 661, 824, 920, 993
HpyAV CCTTC 3 cut(s) 305, 414, 734
HpyCH4III ACNGT 7 cut(s) 55, 673, 1046, 1061, 1097, 1250, 1307
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 791
HpyF3I CTNAG 4 cut(s) 408, 886, 1024, 1391
Hsp92II CATG 9 cut(s) 180, 189, 201, 371, 573, 704, 839, 1360, 1409
Kpn2I TCCGGA 1 cut(s) 526
Kzo9I GATC 5 cut(s) 496, 615, 712, 1273, 1394
LguI GCTCTTC 1 cut(s) 1164
LmnI GCTCC 2 cut(s) 212, 1489
Lsp1109I GCAGC 3 cut(s) 233, 1186, 1282
LweI GCATC 4 cut(s) 80, 589, 803, 1155
MaeI CTAG 4 cut(s) 434, 707, 1277, 1350
MaeIII GTNAC 1 cut(s) 16
MalI GATC 5 cut(s) 498, 617, 714, 1275, 1396
MboI GATC 5 cut(s) 496, 615, 712, 1273, 1394
MflI RGATCY 2 cut(s) 496, 615
MhlI GDGCHC 4 cut(s) 995, 1085, 1176, 1494
MlsI TGGCCA 1 cut(s) 391
MluCI AATT 8 cut(s) 5, 324, 489, 536, 542, 651, 1324, 1422
MluNI TGGCCA 1 cut(s) 391
MlyI GAGTC 1 cut(s) 1328
MmeI TCCRAC 2 cut(s) 773, 1447
Mox20I TGGCCA 1 cut(s) 391
Mph1103I ATGCAT 3 cut(s) 796, 1039, 1411
MroI TCCGGA 1 cut(s) 526
MscI TGGCCA 1 cut(s) 391
MseI TTAA 8 cut(s) 113, 323, 477, 954, 1092, 1113, 1235, 1373
MslI CAYNNNNRTG 3 cut(s) 366, 588, 982
Msp20I TGGCCA 1 cut(s) 391
MspCI CTTAAG 1 cut(s) 1112
MspI CCGG 3 cut(s) 124, 527, 996
MspR9I CCNGG 3 cut(s) 125, 388, 1242
Mva1269I GAATGC 1 cut(s) 270
MvaI CCWGG 2 cut(s) 388, 1242
MwoI GCNNNNNNNGC 2 cut(s) 144, 791
NciI CCSGG 1 cut(s) 125
NcoI CCATGG 1 cut(s) 197
NdeII GATC 5 cut(s) 496, 615, 712, 1273, 1394
NlaIII CATG 9 cut(s) 180, 189, 201, 371, 573, 704, 839, 1360, 1409
NlaIV GGNNCC 1 cut(s) 463
NsiI ATGCAT 3 cut(s) 796, 1039, 1411
NspI RCATGY 1 cut(s) 1409
PaeI GCATGC 1 cut(s) 1409
PciSI GCTCTTC 1 cut(s) 1164
PctI GAATGC 1 cut(s) 270
PfeI GAWTC 3 cut(s) 332, 530, 1280
PflMI CCANNNNNTGG 1 cut(s) 926
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 3 cut(s) 248, 1201, 1297
PleI GAGTC 1 cut(s) 1328
PpsI GAGTC 1 cut(s) 1328
PshBI ATTAAT 1 cut(s) 477
Psp124BI GAGCTC 2 cut(s) 1085, 1176
Psp6I CCWGG 2 cut(s) 386, 1240
PspGI CCWGG 2 cut(s) 386, 1240
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 2 cut(s) 746, 917
PsrI GAACNNNNNNTAC 2 cut(s) 172, 204
PsuI RGATCY 2 cut(s) 496, 615
RsaI GTAC 7 cut(s) 81, 181, 305, 384, 432, 974, 1354
RsaNI GTAC 7 cut(s) 80, 180, 304, 383, 431, 973, 1353
RseI CAYNNNNRTG 3 cut(s) 366, 588, 982
SacI GAGCTC 2 cut(s) 1085, 1176
SalI GTCGAC 1 cut(s) 822
SapI GCTCTTC 1 cut(s) 1164
SaqAI TTAA 8 cut(s) 113, 323, 477, 954, 1092, 1113, 1235, 1373
SatI GCNGC 3 cut(s) 247, 1200, 1296
Sau3AI GATC 5 cut(s) 496, 615, 712, 1273, 1394
Sau96I GGNCC 2 cut(s) 746, 917
ScaI AGTACT 2 cut(s) 432, 974
SchI GAGTC 1 cut(s) 1328
ScrFI CCNGG 3 cut(s) 125, 388, 1242
SduI GDGCHC 4 cut(s) 995, 1085, 1176, 1494
SfaNI GCATC 4 cut(s) 80, 589, 803, 1155
SfcI CTRYAG 2 cut(s) 873, 1290
SinI GGWCC 2 cut(s) 746, 917
SmiMI CAYNNNNRTG 3 cut(s) 366, 588, 982
SmlI CTYRAG 3 cut(s) 66, 902, 1112
SmoI CTYRAG 3 cut(s) 66, 902, 1112
SpeI ACTAGT 1 cut(s) 433
SphI GCATGC 1 cut(s) 1409
Sse9I AATT 8 cut(s) 5, 324, 489, 536, 542, 651, 1324, 1422
SspI AATATT 2 cut(s) 111, 1180
SspMI CTAG 4 cut(s) 434, 707, 1277, 1350
SstI GAGCTC 2 cut(s) 1085, 1176
StyD4I CCNGG 3 cut(s) 123, 386, 1240
StyI CCWWGG 2 cut(s) 75, 197
TaaI ACNGT 7 cut(s) 55, 673, 1046, 1061, 1097, 1250, 1307
TaqI TCGA 4 cut(s) 427, 533, 823, 982
TasI AATT 8 cut(s) 5, 324, 489, 536, 542, 651, 1324, 1422
TatI WGTACW 4 cut(s) 179, 303, 430, 972
TfiI GAWTC 3 cut(s) 332, 530, 1280
Tru1I TTAA 8 cut(s) 113, 323, 477, 954, 1092, 1113, 1235, 1373
Tru9I TTAA 8 cut(s) 113, 323, 477, 954, 1092, 1113, 1235, 1373
TscAI CASTG 4 cut(s) 938, 995, 1049, 1144
TseI GCWGC 3 cut(s) 246, 1199, 1295
TspDTI ATGAA 8 cut(s) 17, 168, 263, 698, 717, 851, 1025, 1221
TspRI CASTG 4 cut(s) 938, 995, 1049, 1144
Van91I CCANNNNNTGG 1 cut(s) 926
Vha464I CTTAAG 1 cut(s) 1112
VneI GTGCAC 1 cut(s) 991
VpaK11BI GGWCC 2 cut(s) 746, 917
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 2 cut(s) 489, 1324
XbaI TCTAGA 1 cut(s) 1276
XceI RCATGY 1 cut(s) 1409
XcmI CCANNNNNNNNNTGG 1 cut(s) 1238
XmiI GTMKAC 1 cut(s) 823
XspI CTAG 4 cut(s) 434, 707, 1277, 1350
ZrmI AGTACT 2 cut(s) 432, 974
Zsp2I ATGCAT 3 cut(s) 796, 1039, 1411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.