Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008715

Physical Location & Seq

Genomic Coordinates Forward (+)

6171528 .. 6176581

Gene Structure 5054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGGAGAAGCTGAAGTCTTTAGTTCCCGAGACCCTAAAGCAAATGATCGCAGAGAGCACTACTGACGATCTGCCCAGCACGTGTTCTTCTCTCCTCGACTTCCTTCTCCATTTCGAGCCGTTCCAGCAAATGGTAAATGACCTGACGGACCCAGAAGTTGCGCTGTGTGGCAAGAATAAAGAGGATGCTTTGGAGAGTAAGCAGAAGGGGAATAGGTGCTTCTTGAGTGGTGATTATGCTAGTGCTTTGGATTTGTATGCCCAGGCATTGCGAGTTGCTCCAGTGGATGCATATGAACAAGACCGAAATCTGGTTGCTACCTTATATGTGAATCGGGCTTCTGTATTGCATGCATGGTTCAGAAGAGGCAAGGCAAATGCATCTATGGGAAAATATGAGGATGCAATACGGGACTTGGATGTAGCAAAGATTGCGGAGTCATCAGTTGGTGGGAAGAAACAGATAGAAAGTGAGATGAAGATAGTTTTGGACCAACAGTATAAAGCTGCAAGTCCATCGACACGACATAATCAGAATAACTCAAATATGTTGGATGAACCACACCAAATGAAATTACAATGTGTCACCACACCCGAGAAAGGAAAGGGTTTGGCTTCCACGGTGGACATTCCTCAAGCATCCTTGGTACATACTGAAGACCCTTTTGCAACGATAATATTAAAGCATTGCCGGGAAACACATTGCCACTACTGCTTGAATGAACTACCAGCGGATAAAGTCCCATGTACATCATGTTCAATACCATGGTATTGCTCCCAGAAATGCTGTATAGAAGCAGGAGGAGAAATGTGCTGCGATTACCCAAACAGTCAAAGCATTCATAAGAATCTACCAGACGACCTTCAGAAGTACATCGTGGAGGCCACTTTAATTGCTGATTCTGAAAGAGATAATCAGATTTCTGAACATAAGCATGAATGTAAAGGTGTACCCTGGCCAGCAGTATTGCCTTCTGAGATAGTTTTGGCTGGTCGAGTACTAGTCAACTCTATAATCAAAAGAGGAGGTTCCACAGATAGTATTAATCTAGGAGAAATTTCGATTGTTATACTTATATCCCAAATTAGGGTGAACTCTATGACAGTTGTTTGTATGAAATTCATTGACCAGCATGAACTAGTAGATCAGTTTGGAAATCTGTCATCTTGGGAAGGAGGTCCAACCAGTAATGTGGAACAGGTCAGAGTAGGTCAAGCTATCTATGCATCAGGAAGCTTGTTCAACCATTCTTGTCGACCTAACATCCATGCTTATTTCCTTTCACGCACTCTTCATATACGAACTACAGAATATGTCTCAGCAGGGTGTCCCCTTGAGTTGTCCTATGGTCCACAGGTTGGGCAGTGGGATTGTAAGGACAGGATTAAGTTTCTGGAAGATGAGTACTCATTTCGATGTCAGTGCACCGGTTGTTCAAAAATGAACTTTTCAGACTTGGTGCTAAATGCGTTTCACTGTGTGAAGCTGAACTGTTCTGGCATAGTCTTGGAGAGCTCTGTTAGTAACTGTGAAAAAGAGAAACTTAAGCACTTACCGAACATCATCAACACTGACAGCATCGTCTCTCTTCTTCAGGCTGAAGAGCTTAATATTGATGACATCAATAAAGCTGCAAATGATATGCAAATCAATAGCTTTTACCAGTTAAATCCTGGCTACTGTCTAAAATGTGGTTCTTATCGTGATCTAGAATCTTCCTCTGCAGCTGCAAATAACTGTATCAGAAGATTACAGAATTCAATTGACTCAAAAAATGTCTCTAGTACCACGCTTTTGGGTGCTTTAAGTTCTCTTGGTGTGCTGAGGTCAACTTTGCATGCATATAATAGAAGAATTGCAGAGGCAGAAGATAATTTTGCACAAGCATTTTGTTTGGTCGGAGAGTTGCAACCTGCAATGGAGCACTGTAAAGCATCAATTGAGATCCTGGAAAAGCTCTATAAGCGTAATCACATTGTTATTGGATATGAACTTGTGAAGCTCTCATCTATCCAGTTATCATTGCGTGACAGTGGTGCCGTGGACAGCATAGATCGACTCTATCAAATATTTTCATGTTATTATGGATCACATACAGACGTCATTTTCCCAGATCTTCAATTCCTCAGAAAAGAGGGGCAGGCCTATTTTGCCAAGTATCAACTCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET TPR_8 zf-MYND

Protein Analysis

723

Amino Acids

80.66

Weight (kDa)

5.7

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33400 AT1G33400 AT1G33400
fragaria_vesca	FvH4_7g26380
malus_domestica	MD07G1239100.v1.1
prunus_persica	Prupe.2G267900_v2.0.a1 Prupe.2G267900_v2.0.a1 Prupe.2G267900_v2.0.a1 Prupe.2G267900_v2.0.a1 Prupe.2G267900_v2.0.a1
pyrus_communis	pycom07g21510
rosa_chinensis	RchiOBHm_Chr1g0372931
rosa_laevigata	RLG00000026865
rosa_multiflora	Rmu_sc0022491.1_g000001 Rmu_sc0026741.1_g000001 Rmu_ssc0000425.1_g000016
rosa_roxburghii	Rroxscaffold_4G00284600
rosa_rugosa	Rorug01G0375000
rosa_samantha	Rh1AG383500 Rh1BG347400 Rh1CG360800 Rh1DG378300
rosa_wichuraiana	Rw1G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1580
AatII	GACGTC	1 cut(s)	2103
Acc36I	ACCTGC	1 cut(s)	1921
AccB1I	GGYRCC	1 cut(s)	2036
AccB7I	CCANNNNNTGG	2 cut(s)	130, 1358
AccI	GTMKAC	1 cut(s)	1255
AciI	CCGC	2 cut(s)	434, 731
AclWI	GGATC	2 cut(s)	1939, 2095
AcoI	YGGCCR	1 cut(s)	956
AcsI	RAATTY	3 cut(s)	1056, 1118, 1756
AcuI	CTGAAG	5 cut(s)	32, 675, 848, 1577, 1620
AcvI	CACGTG	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	2100
AdeI	CACNNNGTG	1 cut(s)	1480
AfaI	GTAC	7 cut(s)	648, 748, 872, 951, 999, 1406, 1786
AfiI	CCNNNNNNNGG	6 cut(s)	130, 310, 599, 1086, 1087, 1358
AflII	CTTAAG	1 cut(s)	1544
AflIII	ACRYGT	1 cut(s)	80
AgeI	ACCGGT	1 cut(s)	1427
AgsI	TTSAA	6 cut(s)	718, 759, 1243, 1437, 1761, 2120
AhlI	ACTAGT	2 cut(s)	1000, 1138
AjnI	CCWGG	4 cut(s)	261, 953, 1672, 1947
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
Alw21I	GWGCWC	4 cut(s)	59, 1427, 1517, 1926
Alw26I	GTCTC	4 cut(s)	23, 1321, 1588, 1783
Alw44I	GTGCAC	1 cut(s)	1423
AlwI	GGATC	2 cut(s)	1939, 2095
Ama87I	CYCGRG	2 cut(s)	26, 593
AoxI	GGCC	3 cut(s)	882, 956, 2142
ApaLI	GTGCAC	1 cut(s)	1423
ApeKI	GCWGC	5 cut(s)	506, 813, 1631, 1724, 1727
ApoI	RAATTY	3 cut(s)	1056, 1118, 1756
AseI	ATTAAT	1 cut(s)	1044
AsiGI	ACCGGT	1 cut(s)	1427
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	4 cut(s)	148, 490, 1178, 1349
AsuC2I	CCSGG	1 cut(s)	692
AsuHPI	GGTGA	3 cut(s)	242, 577, 1102
AvaI	CYCGRG	2 cut(s)	26, 593
AvaII	GGWCC	4 cut(s)	148, 490, 1178, 1349
BaeGI	GKGCMC	1 cut(s)	1427
BalI	TGGCCA	1 cut(s)	958
BanI	GGYRCC	1 cut(s)	2036
BanII	GRGCYC	1 cut(s)	1517
BbrPI	CACGTG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	4 cut(s)	59, 1427, 1517, 1926
BbvCI	CCTCAGC	1 cut(s)	1823
BbvI	GCAGC	5 cut(s)	493, 800, 1618, 1714, 1736
BccI	CCATC	1 cut(s)	523
BceAI	ACGGC	2 cut(s)	103, 2024
BcgI	CGANNNNNNTGC	4 cut(s)	498, 532, 1404, 1438
BciT130I	CCWGG	4 cut(s)	263, 955, 1674, 1949
BcnI	CCSGG	1 cut(s)	692
BcoDI	GTCTC	4 cut(s)	23, 1321, 1588, 1783
BcuI	ACTAGT	2 cut(s)	1000, 1138
BfaI	CTAG	6 cut(s)	240, 1001, 1049, 1139, 1709, 1782
BfmI	CTRYAG	2 cut(s)	1305, 1722
BfrI	CTTAAG	1 cut(s)	1544
BfuAI	ACCTGC	1 cut(s)	1921
BglII	AGATCT	1 cut(s)	2113
BisI	GCNGC	5 cut(s)	507, 814, 1632, 1725, 1728
BlsI	GCNGC	5 cut(s)	508, 815, 1633, 1726, 1729
BmcAI	AGTACT	2 cut(s)	999, 1406
Bme1390I	CCNGG	5 cut(s)	263, 692, 955, 1674, 1949
Bme18I	GGWCC	4 cut(s)	148, 490, 1178, 1349
BmeT110I	CYCGRG	2 cut(s)	26, 593
BmgT120I	GGNCC	4 cut(s)	148, 490, 1178, 1349
BmiI	GGNNCC	3 cut(s)	150, 1030, 2038
BmrFI	CCNGG	5 cut(s)	263, 692, 955, 1674, 1949
BmsI	GCATC	8 cut(s)	175, 277, 389, 391, 647, 1235, 1587, 1943
BpiI	GAAGAC	1 cut(s)	663
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	1823
BpuEI	CTTGAG	3 cut(s)	244, 618, 1355
BpuMI	CCSGG	1 cut(s)	692
BsaAI	YACGTR	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	2100
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	6 cut(s)	261, 618, 642, 764, 953, 2040
BsaWI	WCCGGW	1 cut(s)	1427
Bsc4I	CCNNNNNNNGG	6 cut(s)	130, 310, 599, 1086, 1087, 1358
Bse118I	RCCGGY	1 cut(s)	1427
Bse1I	ACTGG	4 cut(s)	281, 1185, 1663, 2014
Bse3DI	GCAATG	5 cut(s)	266, 685, 700, 1923, 2021
BseBI	CCWGG	4 cut(s)	263, 955, 1674, 1949
BseDI	CCNNGG	6 cut(s)	261, 618, 642, 764, 953, 2040
BseGI	GGATG	7 cut(s)	190, 292, 406, 424, 559, 638, 1263
BseLI	CCNNNNNNNGG	6 cut(s)	130, 310, 599, 1086, 1087, 1358
BseMI	GCAATG	5 cut(s)	266, 685, 700, 1923, 2021
BseMII	CTCAG	4 cut(s)	966, 1332, 1814, 2140
BseNI	ACTGG	4 cut(s)	281, 1185, 1663, 2014
BseRI	GAGGAG	3 cut(s)	83, 816, 1038
BseSI	GKGCMC	1 cut(s)	1427
BseXI	GCAGC	5 cut(s)	493, 800, 1618, 1714, 1736
BseYI	CCCAGC	1 cut(s)	74
BshFI	GGCC	3 cut(s)	884, 958, 2144
BshNI	GGYRCC	1 cut(s)	2036
BshTI	ACCGGT	1 cut(s)	1427
BsiHKAI	GWGCWC	4 cut(s)	59, 1427, 1517, 1926
BsiHKCI	CYCGRG	2 cut(s)	26, 593
BsiSI	CCGG	2 cut(s)	691, 1428
BslFI	GGGAC	3 cut(s)	425, 725, 1314
BslI	CCNNNNNNNGG	6 cut(s)	130, 310, 599, 1086, 1087, 1358
BsmAI	GTCTC	4 cut(s)	23, 1321, 1588, 1783
BsmBI	CGTCTC	1 cut(s)	1588
BsmFI	GGGAC	3 cut(s)	425, 725, 1314
BsmI	GAATGC	1 cut(s)	837
BsnI	GGCC	3 cut(s)	884, 958, 2144
Bso31I	GGTCTC	1 cut(s)	23
BsoBI	CYCGRG	2 cut(s)	26, 593
Bsp1286I	GDGCHC	4 cut(s)	59, 1427, 1517, 1926
Bsp1407I	TGTACA	1 cut(s)	746
Bsp143I	GATC	8 cut(s)	45, 67, 1144, 1705, 1944, 2053, 2087, 2113
Bsp19I	CCATGG	1 cut(s)	764
BspACI	CCGC	2 cut(s)	434, 731
BspANI	GGCC	3 cut(s)	884, 958, 2144
BspCNI	CTCAG	4 cut(s)	967, 1331, 1815, 2139
BspLI	GGNNCC	3 cut(s)	150, 1030, 2038
BspMAI	CTGCAG	1 cut(s)	1726
BspMI	ACCTGC	1 cut(s)	1921
BspPI	GGATC	2 cut(s)	1939, 2095
BspQI	GCTCTTC	1 cut(s)	1596
BspT107I	GGYRCC	1 cut(s)	2036
BspTI	CTTAAG	1 cut(s)	1544
BspTNI	GGTCTC	1 cut(s)	23
BsrDI	GCAATG	5 cut(s)	266, 685, 700, 1923, 2021
BsrFI	RCCGGY	1 cut(s)	1427
BsrGI	TGTACA	1 cut(s)	746
BsrI	ACTGG	4 cut(s)	281, 1185, 1663, 2014
BssAI	RCCGGY	1 cut(s)	1427
BssECI	CCNNGG	6 cut(s)	261, 618, 642, 764, 953, 2040
BssMI	GATC	8 cut(s)	45, 67, 1144, 1705, 1944, 2053, 2087, 2113
BssNI	GRCGYC	1 cut(s)	2100
BssT1I	CCWWGG	2 cut(s)	642, 764
Bst2UI	CCWGG	4 cut(s)	263, 955, 1674, 1949
Bst6I	CTCTTC	4 cut(s)	358, 1296, 1593, 1596
BstACI	GRCGYC	1 cut(s)	2100
BstAFI	CTTAAG	1 cut(s)	1544
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstAUI	TGTACA	1 cut(s)	746
BstBAI	YACGTR	1 cut(s)	81
BstC8I	GCNNGC	4 cut(s)	351, 960, 1839, 2142
BstDEI	CTNAG	4 cut(s)	975, 1318, 1823, 2126
BstDSI	CCRYGG	3 cut(s)	618, 764, 2040
BstF5I	GGATG	7 cut(s)	190, 292, 406, 424, 559, 638, 1263
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	8 cut(s)	48, 70, 1147, 1708, 1947, 2056, 2090, 2116
BstMAI	GTCTC	4 cut(s)	23, 1321, 1588, 1783
BstMBI	GATC	8 cut(s)	45, 67, 1144, 1705, 1944, 2053, 2087, 2113
BstMWI	GCNNNNNNNGC	6 cut(s)	124, 431, 711, 1223, 1963, 2150
BstNI	CCWGG	4 cut(s)	263, 955, 1674, 1949
BstNSI	RCATGY	2 cut(s)	353, 1841
BstSCI	CCNGG	5 cut(s)	261, 690, 953, 1672, 1947
BstSFI	CTRYAG	2 cut(s)	1305, 1722
BstSLI	GKGCMC	1 cut(s)	1427
BstV1I	GCAGC	5 cut(s)	493, 800, 1618, 1714, 1736
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	2 cut(s)	1944, 2113
BstXI	CCANNNNNNTGG	2 cut(s)	1192, 1795
BstYI	RGATCY	2 cut(s)	1944, 2113
BsuRI	GGCC	3 cut(s)	884, 958, 2144
BtgI	CCRYGG	3 cut(s)	618, 764, 2040
BtsCI	GGATG	7 cut(s)	190, 292, 406, 424, 559, 638, 1263
BtsI	GCAGTG	1 cut(s)	1370
BtsIMutI	CAGTG	7 cut(s)	288, 1370, 1427, 1474, 1569, 1924, 2038
BveI	ACCTGC	1 cut(s)	1921
Cac8I	GCNNGC	4 cut(s)	351, 960, 1839, 2142
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	1427
Cfr13I	GGNCC	4 cut(s)	148, 490, 1178, 1349
Csp6I	GTAC	7 cut(s)	647, 747, 871, 950, 998, 1405, 1785
CspAI	ACCGGT	1 cut(s)	1427
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviQI	GTAC	7 cut(s)	647, 747, 871, 950, 998, 1405, 1785
DdeI	CTNAG	4 cut(s)	975, 1318, 1823, 2126
DpnI	GATC	8 cut(s)	47, 69, 1146, 1707, 1946, 2055, 2089, 2115
DpnII	GATC	8 cut(s)	45, 67, 1144, 1705, 1944, 2053, 2087, 2113
DraIII	CACNNNGTG	1 cut(s)	1480
DrdI	GACNNNNNNGTC	1 cut(s)	1580
DseDI	GACNNNNNNGTC	1 cut(s)	1580
EaeI	YGGCCR	1 cut(s)	956
Eam1104I	CTCTTC	4 cut(s)	358, 1296, 1593, 1596
EarI	CTCTTC	4 cut(s)	358, 1296, 1593, 1596
Ecl136II	GAGCTC	1 cut(s)	1515
Eco130I	CCWWGG	2 cut(s)	642, 764
Eco147I	AGGCCT	1 cut(s)	2144
Eco24I	GRGCYC	1 cut(s)	1517
Eco31I	GGTCTC	1 cut(s)	23
Eco47I	GGWCC	4 cut(s)	148, 490, 1178, 1349
Eco53kI	GAGCTC	1 cut(s)	1515
Eco57I	CTGAAG	5 cut(s)	32, 675, 848, 1577, 1620
Eco72I	CACGTG	1 cut(s)	81
Eco88I	CYCGRG	2 cut(s)	26, 593
EcoICRI	GAGCTC	1 cut(s)	1515
EcoRI	GAATTC	1 cut(s)	1756
EcoRII	CCWGG	4 cut(s)	261, 953, 1672, 1947
EcoT14I	CCWWGG	2 cut(s)	642, 764
EcoT22I	ATGCAT	5 cut(s)	292, 355, 382, 1228, 1843
EcoT38I	GRGCYC	1 cut(s)	1517
ErhI	CCWWGG	2 cut(s)	642, 764
Esp3I	CGTCTC	1 cut(s)	1588
FalI	AAGNNNNNCTT	2 cut(s)	1527, 1559
FaqI	GGGAC	3 cut(s)	425, 725, 1314
FauNDI	CATATG	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	1255
Fnu4HI	GCNGC	5 cut(s)	507, 814, 1632, 1725, 1728
FokI	GGATG	7 cut(s)	197, 299, 413, 431, 566, 625, 1250
FriOI	GRGCYC	1 cut(s)	1517
Fsp4HI	GCNGC	5 cut(s)	507, 814, 1632, 1725, 1728
FspBI	CTAG	6 cut(s)	240, 1001, 1049, 1139, 1709, 1782
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	5 cut(s)	507, 814, 1632, 1725, 1728
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	3 cut(s)	884, 958, 2144
HapII	CCGG	2 cut(s)	691, 1428
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	2100
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	3 cut(s)	1006, 1256, 1830
HindII	GTYRAC	3 cut(s)	1006, 1256, 1830
HindIII	AAGCTT	1 cut(s)	1234
HinfI	GANTC	7 cut(s)	331, 437, 847, 899, 1712, 1766, 2058
HpaII	CCGG	2 cut(s)	691, 1428
HphI	GGTGA	3 cut(s)	242, 577, 1102
Hpy166II	GTNNAC	9 cut(s)	625, 950, 1006, 1093, 1256, 1352, 1425, 1830, 2044
Hpy188III	TCNNGA	6 cut(s)	26, 223, 1230, 1394, 1703, 1709
Hpy8I	GTNNAC	9 cut(s)	625, 950, 1006, 1093, 1256, 1352, 1425, 1830, 2044
HpyAV	CCTTC	5 cut(s)	113, 199, 872, 981, 1166
HpyCH4IV	ACGT	2 cut(s)	80, 2100
HpyF10VI	GCNNNNNNNGC	6 cut(s)	124, 431, 711, 1223, 1963, 2150
HpyF3I	CTNAG	4 cut(s)	975, 1318, 1823, 2126
HpySE526I	ACGT	2 cut(s)	80, 2100
Hsp92I	GRCGYC	1 cut(s)	2100
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	8 cut(s)	45, 67, 1144, 1705, 1944, 2053, 2087, 2113
LguI	GCTCTTC	1 cut(s)	1596
LmnI	GCTCC	3 cut(s)	283, 779, 1921
Lsp1109I	GCAGC	5 cut(s)	493, 800, 1618, 1714, 1736
LweI	GCATC	8 cut(s)	175, 277, 389, 391, 647, 1235, 1587, 1943
MaeI	CTAG	6 cut(s)	240, 1001, 1049, 1139, 1709, 1782
MaeII	ACGT	2 cut(s)	80, 2100
MaeIII	GTNAC	3 cut(s)	583, 1523, 2027
MalI	GATC	8 cut(s)	47, 69, 1146, 1707, 1946, 2055, 2089, 2115
MboI	GATC	8 cut(s)	45, 67, 1144, 1705, 1944, 2053, 2087, 2113
MfeI	CAATTG	2 cut(s)	1761, 1938
MflI	RGATCY	2 cut(s)	1944, 2113
MhlI	GDGCHC	4 cut(s)	59, 1427, 1517, 1926
MlsI	TGGCCA	1 cut(s)	958
MluNI	TGGCCA	1 cut(s)	958
MlyI	GAGTC	3 cut(s)	446, 1760, 2052
MmeI	TCCRAC	3 cut(s)	531, 1205, 1879
Mox20I	TGGCCA	1 cut(s)	958
Mph1103I	ATGCAT	5 cut(s)	292, 355, 382, 1228, 1843
MscI	TGGCCA	1 cut(s)	958
MseI	TTAA	8 cut(s)	680, 890, 1044, 1386, 1545, 1608, 1667, 1805
MslI	CAYNNNNRTG	2 cut(s)	933, 1414
Msp20I	TGGCCA	1 cut(s)	958
MspA1I	CMGCKG	2 cut(s)	731, 1727
MspCI	CTTAAG	1 cut(s)	1544
MspI	CCGG	2 cut(s)	691, 1428
MspR9I	CCNGG	5 cut(s)	263, 692, 955, 1674, 1949
MunI	CAATTG	2 cut(s)	1761, 1938
Mva1269I	GAATGC	1 cut(s)	837
MvaI	CCWGG	4 cut(s)	263, 955, 1674, 1949
MwoI	GCNNNNNNNGC	6 cut(s)	124, 431, 711, 1223, 1963, 2150
NciI	CCSGG	1 cut(s)	692
NcoI	CCATGG	1 cut(s)	764
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	8 cut(s)	45, 67, 1144, 1705, 1944, 2053, 2087, 2113
NlaIV	GGNNCC	3 cut(s)	150, 1030, 2038
NmuCI	GTSAC	2 cut(s)	583, 2027
NsiI	ATGCAT	5 cut(s)	292, 355, 382, 1228, 1843
NspI	RCATGY	2 cut(s)	353, 1841
PaeI	GCATGC	2 cut(s)	353, 1841
PceI	AGGCCT	1 cut(s)	2144
PciSI	GCTCTTC	1 cut(s)	1596
PctI	GAATGC	1 cut(s)	837
PfeI	GAWTC	4 cut(s)	331, 847, 899, 1712
PflMI	CCANNNNNTGG	2 cut(s)	130, 1358
PfoI	TCCNGGA	1 cut(s)	1947
PinAI	ACCGGT	1 cut(s)	1427
PkrI	GCNGC	5 cut(s)	508, 815, 1633, 1726, 1729
PleI	GAGTC	3 cut(s)	445, 1760, 2052
PmaCI	CACGTG	1 cut(s)	81
PmlI	CACGTG	1 cut(s)	81
PpsI	GAGTC	3 cut(s)	445, 1760, 2052
Ppu21I	YACGTR	1 cut(s)	81
PshBI	ATTAAT	1 cut(s)	1044
Psp124BI	GAGCTC	1 cut(s)	1517
Psp6I	CCWGG	4 cut(s)	261, 953, 1672, 1947
PspCI	CACGTG	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	4 cut(s)	261, 953, 1672, 1947
PspN4I	GGNNCC	3 cut(s)	150, 1030, 2038
PspPI	GGNCC	4 cut(s)	148, 490, 1178, 1349
PsrI	GAACNNNNNNTAC	2 cut(s)	739, 771
PstI	CTGCAG	1 cut(s)	1726
PsuI	RGATCY	2 cut(s)	1944, 2113
PvuII	CAGCTG	1 cut(s)	1727
RsaI	GTAC	7 cut(s)	648, 748, 872, 951, 999, 1406, 1786
RsaNI	GTAC	7 cut(s)	647, 747, 871, 950, 998, 1405, 1785
RseI	CAYNNNNRTG	2 cut(s)	933, 1414
SacI	GAGCTC	1 cut(s)	1517
SalI	GTCGAC	1 cut(s)	1254
SapI	GCTCTTC	1 cut(s)	1596
SaqAI	TTAA	8 cut(s)	680, 890, 1044, 1386, 1545, 1608, 1667, 1805
SatI	GCNGC	5 cut(s)	507, 814, 1632, 1725, 1728
Sau3AI	GATC	8 cut(s)	45, 67, 1144, 1705, 1944, 2053, 2087, 2113
Sau96I	GGNCC	4 cut(s)	148, 490, 1178, 1349
ScaI	AGTACT	2 cut(s)	999, 1406
SchI	GAGTC	3 cut(s)	446, 1760, 2052
ScrFI	CCNGG	5 cut(s)	263, 692, 955, 1674, 1949
SduI	GDGCHC	4 cut(s)	59, 1427, 1517, 1926
SfaNI	GCATC	8 cut(s)	175, 277, 389, 391, 647, 1235, 1587, 1943
SfcI	CTRYAG	2 cut(s)	1305, 1722
SinI	GGWCC	4 cut(s)	148, 490, 1178, 1349
SmiMI	CAYNNNNRTG	2 cut(s)	933, 1414
SmlI	CTYRAG	4 cut(s)	223, 633, 1334, 1544
SmoI	CTYRAG	4 cut(s)	223, 633, 1334, 1544
SpeI	ACTAGT	2 cut(s)	1000, 1138
SphI	GCATGC	2 cut(s)	353, 1841
SseBI	AGGCCT	1 cut(s)	2144
SsiI	CCGC	2 cut(s)	434, 731
SspI	AATATT	3 cut(s)	678, 1612, 2070
SspMI	CTAG	6 cut(s)	240, 1001, 1049, 1139, 1709, 1782
SstI	GAGCTC	1 cut(s)	1517
StuI	AGGCCT	1 cut(s)	2144
StyD4I	CCNGG	5 cut(s)	261, 690, 953, 1672, 1947
StyI	CCWWGG	2 cut(s)	642, 764
TaiI	ACGT	2 cut(s)	83, 2103
TaqI	TCGA	8 cut(s)	96, 114, 518, 994, 1061, 1255, 1414, 2056
TaqII	GACCGA	1 cut(s)	318
TatI	WGTACW	4 cut(s)	746, 870, 997, 1404
TfiI	GAWTC	4 cut(s)	331, 847, 899, 1712
Tru1I	TTAA	8 cut(s)	680, 890, 1044, 1386, 1545, 1608, 1667, 1805
Tru9I	TTAA	8 cut(s)	680, 890, 1044, 1386, 1545, 1608, 1667, 1805
TscAI	CASTG	7 cut(s)	288, 1370, 1427, 1481, 1576, 1931, 2038
TseFI	GTSAC	2 cut(s)	583, 2027
TseI	GCWGC	5 cut(s)	506, 813, 1631, 1724, 1727
Tsp45I	GTSAC	2 cut(s)	583, 2027
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	7 cut(s)	288, 1370, 1427, 1481, 1576, 1931, 2038
Van91I	CCANNNNNTGG	2 cut(s)	130, 1358
Vha464I	CTTAAG	1 cut(s)	1544
VneI	GTGCAC	1 cut(s)	1423
VpaK11BI	GGWCC	4 cut(s)	148, 490, 1178, 1349
VspI	ATTAAT	1 cut(s)	1044
XapI	RAATTY	3 cut(s)	1056, 1118, 1756
XbaI	TCTAGA	1 cut(s)	1708
XceI	RCATGY	2 cut(s)	353, 1841
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1670
XmiI	GTMKAC	1 cut(s)	1255
XspI	CTAG	6 cut(s)	240, 1001, 1049, 1139, 1709, 1782
ZraI	GACGTC	1 cut(s)	2101
ZrmI	AGTACT	2 cut(s)	999, 1406
Zsp2I	ATGCAT	5 cut(s)	292, 355, 382, 1228, 1843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.