Rmu_ssc0000425.1_g000016

SET and MYND domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000425.1
Physical Location & Seq
Forward (+)
100918 .. 104972
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000425.1_g000016.1.cds

Sequence Viewer

Length: 1488 bp
atggagaagctgaagtctttagttcccgagaccctacagaaaatgatcgcagagagcactactgacgatctgcccaggtcgtgttcttctctcctcgacttccttctccatttcgagccgttccagcgaatggttaatgacctgacggacccggaagttgcgctgtgcgggaagaataaagagggtgctttggagagtaagcaaaaggggaataggtgcttcttgagtggtgattatgctaatgctttggatttctatacccaggcattgcgagttgctccaatggatgcatatgaacaagaccgaaagttggttgctaccttgtatgtgaaccgggcttctgtattgcataaaatggggcttgtgggggagtgtgtaagagactgcaaccgggcgcttcggatttcttcaaactatgccaaggcatggtttagaagaggcaaggcaaatgcatctatgggaaaatatgaggatgcaatacgggacttggatgtagcaaagattgcggagtcatcagttggtgggaagaaacagatagaaagtgagatgaagatagttttggaccaacagtataaagccgcaagtccatcaacacgacataatcagactaactcaaatatgttggaatatgtctcagcagggtgtccccttgagttgtcctatggtccacaggttgggcagtgggattgtaaggacaggattaagtttctggaagatgagtactcatttcgatgtcagtgcactggttgttcaaaaatgaacttttcagacttagtgctaaatgcgtttcactgtgtgaagctgaactgttctggcatagtcttggagagctctgttattaactgtgaaaaagagaaacttaagcacttaccgaacatcatcaacactgacagcatcgtctctcttcttcaggctgaagagctcaatattgatgacatcaataaagctgcaaatgaaatgcaaatcaatagcttttaccagttaaatcctggctactgtctaaaatgtggttcttatcgtgatctagaatcttcctctgtagctgcaaataactgtatcagaagattacagaattccatagactcaaaaaatgtctctagtaccatgcttttgggtgctttaagttctcttggtgtgctgagatcaactttgcatgcatataatagaagaattgcagaggcagaagataatcttgcacaagcattttgtttggtcggagagttgcaacctgcaatggagcactgtaaagcatcaattgagatcctggaaaagctctataaccttaatcacattgttattggatatgaacttgtgaagctctcatctatccagttatcattgcgtgacagtggtgccgtggacagcatagatcgactctatcaaatattttcatgttattatggatcacatagagacgtcattttcccagatcttcaattcctcagaaaagaggggaagacctattttgccaagtatcaactcacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

495

Amino Acids

55.64

Weight (kDa)

6.35

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 896
AatII GACGTC 1 cut(s) 1419
Acc36I ACCTGC 1 cut(s) 1237
AccB1I GGYRCC 1 cut(s) 1352
AccB7I CCANNNNNTGG 3 cut(s) 130, 426, 674
AciI CCGC 3 cut(s) 168, 506, 579
AclWI GGATC 2 cut(s) 1255, 1411
AcsI RAATTY 1 cut(s) 1072
AcuI CTGAAG 3 cut(s) 32, 893, 936
AcyI GRCGYC 1 cut(s) 1416
AdeI CACNNNGTG 1 cut(s) 796
AfaI GTAC 2 cut(s) 722, 1102
AfiI CCNNNNNNNGG 4 cut(s) 130, 310, 426, 674
AflII CTTAAG 1 cut(s) 860
AgsI TTSAA 3 cut(s) 411, 753, 1436
AjnI CCWGG 4 cut(s) 74, 261, 988, 1263
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 9 cut(s) 10, 802, 831, 922, 947, 972, 1043, 1273, 1318
AluI AGCT 9 cut(s) 10, 802, 831, 922, 947, 972, 1043, 1273, 1318
Alw21I GWGCWC 5 cut(s) 59, 743, 833, 924, 1242
Alw26I GTCTC 6 cut(s) 23, 375, 637, 904, 1099, 1407
Alw44I GTGCAC 1 cut(s) 739
AlwI GGATC 2 cut(s) 1255, 1411
Ama87I CYCGRG 1 cut(s) 26
ApaLI GTGCAC 1 cut(s) 739
ApeKI GCWGC 2 cut(s) 947, 1043
ApoI RAATTY 1 cut(s) 1072
AspLEI GCGC 2 cut(s) 163, 397
AspS9I GGNCC 3 cut(s) 148, 562, 665
AsuC2I CCSGG 3 cut(s) 152, 335, 392
AsuHPI GGTGA 1 cut(s) 242
AvaI CYCGRG 1 cut(s) 26
AvaII GGWCC 3 cut(s) 148, 562, 665
BaeGI GKGCMC 1 cut(s) 743
BanI GGYRCC 1 cut(s) 1352
BanII GRGCYC 2 cut(s) 833, 924
BbsI GAAGAC 1 cut(s) 1463
Bbv12I GWGCWC 5 cut(s) 59, 743, 833, 924, 1242
BbvI GCAGC 2 cut(s) 934, 1030
BccI CCATC 1 cut(s) 595
BceAI ACGGC 2 cut(s) 103, 1340
BcgI CGANNNNNNTGC 2 cut(s) 720, 754
BciT130I CCWGG 4 cut(s) 76, 263, 990, 1265
BcnI CCSGG 3 cut(s) 152, 335, 392
BcoDI GTCTC 6 cut(s) 23, 375, 637, 904, 1099, 1407
BfaI CTAG 2 cut(s) 1025, 1098
BfmI CTRYAG 2 cut(s) 35, 1038
BfoI RGCGCY 1 cut(s) 398
BfrI CTTAAG 1 cut(s) 860
BfuAI ACCTGC 1 cut(s) 1237
BglII AGATCT 1 cut(s) 1429
BisI GCNGC 3 cut(s) 579, 948, 1044
BlsI GCNGC 3 cut(s) 580, 949, 1045
BmcAI AGTACT 1 cut(s) 722
Bme1390I CCNGG 7 cut(s) 76, 152, 263, 335, 392, 990, 1265
Bme18I GGWCC 3 cut(s) 148, 562, 665
BmeT110I CYCGRG 1 cut(s) 26
BmgT120I GGNCC 3 cut(s) 148, 562, 665
BmiI GGNNCC 2 cut(s) 150, 1354
BmrFI CCNGG 7 cut(s) 76, 152, 263, 335, 392, 990, 1265
BmsI GCATC 5 cut(s) 277, 461, 463, 903, 1259
BpiI GAAGAC 1 cut(s) 1463
BpuEI CTTGAG 2 cut(s) 244, 671
BpuMI CCSGG 3 cut(s) 152, 335, 392
BsaHI GRCGYC 1 cut(s) 1416
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 4 cut(s) 74, 261, 420, 1356
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 310, 426, 674
Bse1I ACTGG 3 cut(s) 748, 979, 1330
Bse3DI GCAATG 3 cut(s) 266, 1239, 1337
BseBI CCWGG 4 cut(s) 76, 263, 990, 1265
BseDI CCNNGG 4 cut(s) 74, 261, 420, 1356
BseGI GGATG 3 cut(s) 292, 478, 496
BseLI CCNNNNNNNGG 4 cut(s) 130, 310, 426, 674
BseMI GCAATG 3 cut(s) 266, 1239, 1337
BseMII CTCAG 3 cut(s) 648, 1130, 1456
BseNI ACTGG 3 cut(s) 748, 979, 1330
BseRI GAGGAG 1 cut(s) 83
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 2 cut(s) 934, 1030
BshNI GGYRCC 1 cut(s) 1352
BsiHKAI GWGCWC 5 cut(s) 59, 743, 833, 924, 1242
BsiHKCI CYCGRG 1 cut(s) 26
BsiSI CCGG 3 cut(s) 152, 334, 391
BslFI GGGAC 2 cut(s) 497, 630
BslI CCNNNNNNNGG 4 cut(s) 130, 310, 426, 674
BsmAI GTCTC 6 cut(s) 23, 375, 637, 904, 1099, 1407
BsmBI CGTCTC 2 cut(s) 904, 1407
BsmFI GGGAC 2 cut(s) 497, 630
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 26
Bsp1286I GDGCHC 5 cut(s) 59, 743, 833, 924, 1242
Bsp143I GATC 8 cut(s) 45, 67, 1021, 1142, 1260, 1369, 1403, 1429
BspACI CCGC 3 cut(s) 168, 506, 579
BspCNI CTCAG 3 cut(s) 647, 1131, 1455
BspLI GGNNCC 2 cut(s) 150, 1354
BspMI ACCTGC 1 cut(s) 1237
BspPI GGATC 2 cut(s) 1255, 1411
BspQI GCTCTTC 1 cut(s) 912
BspT107I GGYRCC 1 cut(s) 1352
BspTI CTTAAG 1 cut(s) 860
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 3 cut(s) 266, 1239, 1337
BsrI ACTGG 3 cut(s) 748, 979, 1330
BssECI CCNNGG 4 cut(s) 74, 261, 420, 1356
BssMI GATC 8 cut(s) 45, 67, 1021, 1142, 1260, 1369, 1403, 1429
BssNI GRCGYC 1 cut(s) 1416
BssT1I CCWWGG 1 cut(s) 420
Bst2UI CCWGG 4 cut(s) 76, 263, 990, 1265
Bst4CI ACNGT 8 cut(s) 570, 794, 809, 845, 998, 1055, 1244, 1349
Bst6I CTCTTC 3 cut(s) 430, 909, 912
BstACI GRCGYC 1 cut(s) 1416
BstAFI CTTAAG 1 cut(s) 860
BstAPI GCANNNNNTGC 1 cut(s) 503
BstC8I GCNNGC 1 cut(s) 1155
BstDEI CTNAG 4 cut(s) 634, 772, 1139, 1442
BstDSI CCRYGG 1 cut(s) 1356
BstF5I GGATG 3 cut(s) 292, 478, 496
BstH2I RGCGCY 1 cut(s) 398
BstHHI GCGC 2 cut(s) 163, 397
BstKTI GATC 8 cut(s) 48, 70, 1024, 1145, 1263, 1372, 1406, 1432
BstMAI GTCTC 6 cut(s) 23, 375, 637, 904, 1099, 1407
BstMBI GATC 8 cut(s) 45, 67, 1021, 1142, 1260, 1369, 1403, 1429
BstMWI GCNNNNNNNGC 2 cut(s) 124, 503
BstNI CCWGG 4 cut(s) 76, 263, 990, 1265
BstNSI RCATGY 1 cut(s) 1157
BstSCI CCNGG 7 cut(s) 74, 150, 261, 333, 390, 988, 1263
BstSFI CTRYAG 2 cut(s) 35, 1038
BstSLI GKGCMC 1 cut(s) 743
BstV1I GCAGC 2 cut(s) 934, 1030
BstV2I GAAGAC 1 cut(s) 1463
BstX2I RGATCY 2 cut(s) 1260, 1429
BstXI CCANNNNNNTGG 1 cut(s) 1111
BstYI RGATCY 2 cut(s) 1260, 1429
BtgI CCRYGG 1 cut(s) 1356
BtsCI GGATG 3 cut(s) 292, 478, 496
BtsI GCAGTG 1 cut(s) 686
BtsIMutI CAGTG 7 cut(s) 686, 741, 743, 790, 885, 1240, 1354
BveI ACCTGC 1 cut(s) 1237
Cac8I GCNNGC 1 cut(s) 1155
CfoI GCGC 2 cut(s) 163, 397
Cfr13I GGNCC 3 cut(s) 148, 562, 665
Csp6I GTAC 2 cut(s) 721, 1101
CviAII CATG 5 cut(s) 426, 1105, 1154, 1392, 1485
CviQI GTAC 2 cut(s) 721, 1101
DdeI CTNAG 4 cut(s) 634, 772, 1139, 1442
DpnI GATC 8 cut(s) 47, 69, 1023, 1144, 1262, 1371, 1405, 1431
DpnII GATC 8 cut(s) 45, 67, 1021, 1142, 1260, 1369, 1403, 1429
DraIII CACNNNGTG 1 cut(s) 796
DrdI GACNNNNNNGTC 1 cut(s) 896
DseDI GACNNNNNNGTC 1 cut(s) 896
Eam1104I CTCTTC 3 cut(s) 430, 909, 912
EarI CTCTTC 3 cut(s) 430, 909, 912
Ecl136II GAGCTC 2 cut(s) 831, 922
Eco130I CCWWGG 1 cut(s) 420
Eco24I GRGCYC 2 cut(s) 833, 924
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 3 cut(s) 148, 562, 665
Eco53kI GAGCTC 2 cut(s) 831, 922
Eco57I CTGAAG 3 cut(s) 32, 893, 936
Eco88I CYCGRG 1 cut(s) 26
EcoICRI GAGCTC 2 cut(s) 831, 922
EcoRI GAATTC 1 cut(s) 1072
EcoRII CCWGG 4 cut(s) 74, 261, 988, 1263
EcoT14I CCWWGG 1 cut(s) 420
EcoT22I ATGCAT 3 cut(s) 292, 454, 1159
EcoT38I GRGCYC 2 cut(s) 833, 924
ErhI CCWWGG 1 cut(s) 420
Esp3I CGTCTC 2 cut(s) 904, 1407
FaeI CATG 5 cut(s) 429, 1108, 1157, 1395, 1488
FalI AAGNNNNNCTT 4 cut(s) 843, 875, 1176, 1208
FaqI GGGAC 2 cut(s) 497, 630
FatI CATG 5 cut(s) 425, 1104, 1153, 1391, 1484
FauI CCCGC 1 cut(s) 161
FauNDI CATATG 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 579, 948, 1044
FokI GGATG 3 cut(s) 299, 485, 503
FriOI GRGCYC 2 cut(s) 833, 924
Fsp4HI GCNGC 3 cut(s) 579, 948, 1044
FspBI CTAG 2 cut(s) 1025, 1098
GlaI GCGC 2 cut(s) 162, 396
GluI GCNGC 3 cut(s) 579, 948, 1044
HaeII RGCGCY 1 cut(s) 398
HapII CCGG 3 cut(s) 152, 334, 391
HhaI GCGC 2 cut(s) 163, 397
Hin1I GRCGYC 1 cut(s) 1416
Hin1II CATG 5 cut(s) 429, 1108, 1157, 1395, 1488
Hin6I GCGC 2 cut(s) 161, 395
HinP1I GCGC 2 cut(s) 161, 395
HinfI GANTC 4 cut(s) 509, 1028, 1082, 1374
HpaII CCGG 3 cut(s) 152, 334, 391
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 4 cut(s) 331, 668, 741, 1360
Hpy188I TCNGA 6 cut(s) 402, 606, 769, 1061, 1217, 1445
Hpy188III TCNNGA 5 cut(s) 26, 223, 710, 1019, 1025
Hpy8I GTNNAC 4 cut(s) 331, 668, 741, 1360
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 8 cut(s) 570, 794, 809, 845, 998, 1055, 1244, 1349
HpyCH4IV ACGT 1 cut(s) 1416
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 503
HpyF3I CTNAG 4 cut(s) 634, 772, 1139, 1442
HpySE526I ACGT 1 cut(s) 1416
Hsp92I GRCGYC 1 cut(s) 1416
Hsp92II CATG 5 cut(s) 429, 1108, 1157, 1395, 1488
HspAI GCGC 2 cut(s) 161, 395
Kzo9I GATC 8 cut(s) 45, 67, 1021, 1142, 1260, 1369, 1403, 1429
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 2 cut(s) 283, 1237
Lsp1109I GCAGC 2 cut(s) 934, 1030
LweI GCATC 5 cut(s) 277, 461, 463, 903, 1259
MaeI CTAG 2 cut(s) 1025, 1098
MaeII ACGT 1 cut(s) 1416
MaeIII GTNAC 1 cut(s) 1343
MalI GATC 8 cut(s) 47, 69, 1023, 1144, 1262, 1371, 1405, 1431
MboI GATC 8 cut(s) 45, 67, 1021, 1142, 1260, 1369, 1403, 1429
MfeI CAATTG 1 cut(s) 1254
MflI RGATCY 2 cut(s) 1260, 1429
MhlI GDGCHC 5 cut(s) 59, 743, 833, 924, 1242
MluCI AATT 4 cut(s) 1072, 1170, 1254, 1436
MlyI GAGTC 3 cut(s) 518, 1076, 1368
MmeI TCCRAC 2 cut(s) 603, 1195
MnlI CCTC 8 cut(s) 104, 175, 431, 463, 1045, 1171, 1444, 1451
Mph1103I ATGCAT 3 cut(s) 292, 454, 1159
MseI TTAA 7 cut(s) 135, 702, 840, 861, 983, 1121, 1284
MslI CAYNNNNRTG 1 cut(s) 730
MspCI CTTAAG 1 cut(s) 860
MspI CCGG 3 cut(s) 152, 334, 391
MspR9I CCNGG 7 cut(s) 76, 152, 263, 335, 392, 990, 1265
MunI CAATTG 1 cut(s) 1254
MvaI CCWGG 4 cut(s) 76, 263, 990, 1265
MwoI GCNNNNNNNGC 2 cut(s) 124, 503
NciI CCSGG 3 cut(s) 152, 335, 392
NdeI CATATG 1 cut(s) 292
NdeII GATC 8 cut(s) 45, 67, 1021, 1142, 1260, 1369, 1403, 1429
NlaIII CATG 5 cut(s) 429, 1108, 1157, 1395, 1488
NlaIV GGNNCC 2 cut(s) 150, 1354
NmuCI GTSAC 1 cut(s) 1343
NsiI ATGCAT 3 cut(s) 292, 454, 1159
NspI RCATGY 1 cut(s) 1157
PaeI GCATGC 1 cut(s) 1157
PciSI GCTCTTC 1 cut(s) 912
PfeI GAWTC 1 cut(s) 1028
PflMI CCANNNNNTGG 3 cut(s) 130, 426, 674
PfoI TCCNGGA 1 cut(s) 1263
PkrI GCNGC 3 cut(s) 580, 949, 1045
PleI GAGTC 3 cut(s) 517, 1076, 1368
PpsI GAGTC 3 cut(s) 517, 1076, 1368
Psp124BI GAGCTC 2 cut(s) 833, 924
Psp6I CCWGG 4 cut(s) 74, 261, 988, 1263
PspGI CCWGG 4 cut(s) 74, 261, 988, 1263
PspN4I GGNNCC 2 cut(s) 150, 1354
PspPI GGNCC 3 cut(s) 148, 562, 665
PsuI RGATCY 2 cut(s) 1260, 1429
RsaI GTAC 2 cut(s) 722, 1102
RsaNI GTAC 2 cut(s) 721, 1101
RseI CAYNNNNRTG 1 cut(s) 730
SacI GAGCTC 2 cut(s) 833, 924
SapI GCTCTTC 1 cut(s) 912
SaqAI TTAA 7 cut(s) 135, 702, 840, 861, 983, 1121, 1284
SatI GCNGC 3 cut(s) 579, 948, 1044
Sau3AI GATC 8 cut(s) 45, 67, 1021, 1142, 1260, 1369, 1403, 1429
Sau96I GGNCC 3 cut(s) 148, 562, 665
ScaI AGTACT 1 cut(s) 722
SchI GAGTC 3 cut(s) 518, 1076, 1368
ScrFI CCNGG 7 cut(s) 76, 152, 263, 335, 392, 990, 1265
SduI GDGCHC 5 cut(s) 59, 743, 833, 924, 1242
SfaNI GCATC 5 cut(s) 277, 461, 463, 903, 1259
SfcI CTRYAG 2 cut(s) 35, 1038
SinI GGWCC 3 cut(s) 148, 562, 665
SmiMI CAYNNNNRTG 1 cut(s) 730
SmlI CTYRAG 3 cut(s) 223, 650, 860
SmoI CTYRAG 3 cut(s) 223, 650, 860
SphI GCATGC 1 cut(s) 1157
Sse9I AATT 4 cut(s) 1072, 1170, 1254, 1436
SsiI CCGC 3 cut(s) 168, 506, 579
SspI AATATT 2 cut(s) 928, 1386
SspMI CTAG 2 cut(s) 1025, 1098
SstI GAGCTC 2 cut(s) 833, 924
StyD4I CCNGG 7 cut(s) 74, 150, 261, 333, 390, 988, 1263
StyI CCWWGG 1 cut(s) 420
TaaI ACNGT 8 cut(s) 570, 794, 809, 845, 998, 1055, 1244, 1349
TaiI ACGT 1 cut(s) 1419
TaqI TCGA 4 cut(s) 96, 114, 730, 1372
TaqII GACCGA 1 cut(s) 318
TasI AATT 4 cut(s) 1072, 1170, 1254, 1436
TatI WGTACW 1 cut(s) 720
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 1 cut(s) 1028
Tru1I TTAA 7 cut(s) 135, 702, 840, 861, 983, 1121, 1284
Tru9I TTAA 7 cut(s) 135, 702, 840, 861, 983, 1121, 1284
TscAI CASTG 7 cut(s) 686, 743, 748, 797, 892, 1247, 1354
TseFI GTSAC 1 cut(s) 1343
TseI GCWGC 2 cut(s) 947, 1043
Tsp45I GTSAC 1 cut(s) 1343
TspDTI ATGAA 6 cut(s) 309, 563, 773, 969, 1320, 1380
TspGWI ACGGA 1 cut(s) 161
TspRI CASTG 7 cut(s) 686, 743, 748, 797, 892, 1247, 1354
Van91I CCANNNNNTGG 3 cut(s) 130, 426, 674
Vha464I CTTAAG 1 cut(s) 860
VneI GTGCAC 1 cut(s) 739
VpaK11BI GGWCC 3 cut(s) 148, 562, 665
XapI RAATTY 1 cut(s) 1072
XbaI TCTAGA 1 cut(s) 1024
XceI RCATGY 1 cut(s) 1157
XcmI CCANNNNNNNNNTGG 1 cut(s) 986
XspI CTAG 2 cut(s) 1025, 1098
ZraI GACGTC 1 cut(s) 1417
ZrmI AGTACT 1 cut(s) 722
Zsp2I ATGCAT 3 cut(s) 292, 454, 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.