Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026741.1

Orthogroup ID

OG0008715

Physical Location & Seq

Genomic Coordinates Forward (+)

651 .. 2855

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026741.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgaaattacaatgtgtcaccacacccgagaaaggaaagggtttggcttccacggtggacattcctcaagcatccttggtacataccgaagacccttttgcaacgataatattaaagcattgccgggaaacacattgccactactgcttgaatgaactaccagcagataaagtcccatgtacatcatgttcaataccatggtattgctcccagaaatgctgtatagaggcaggaggagaaatgtgctgcgattacccaaacaatcaaagcattcataagtatctaccagacgaccttcagaagtacatcgtggaggccactttaattgctgattctgaaagagataatcagatttctgaacataagcatgaatgtaaaggtgtaccctggccagcagtattgccttctgagatagttttggctggtcgagtactagtcaactctataatcaaaagaggaggttccacagatagtattaatctcggagaaatttcggttgggcagtgggattgtaaggacaggattaagtttctggaagatgagtactcatttcgatgtcagtgcactggttgttcaaaaatgaacttttcagacttagtgctaaatgcgtttcactgtgtgaagctgaactgttctggcatagtcttggagagctctgttattaactgtgaaaaagagaaacttaagcacttaccgaacatcatcaacactgacagcatcgtctctcttcttcaggctgaagagctcaatattgatgacatcaataaagctgcaaatgatatgcaaatcaatagcttttaccagttaaatcctggctactgtctaaaatgtggttcttatcgtgatctagaatcttcctctgtagctgcaaataactgtatcagaaggtataacactatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SET TPR_8 zf-MYND

Protein Analysis

300

Amino Acids

33.49

Weight (kDa)

5.5

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33400 AT1G33400 AT1G33400
fragaria_vesca	FvH4_7g26380
malus_domestica	MD07G1239100.v1.1
prunus_persica	Prupe.2G267900_v2.0.a1 Prupe.2G267900_v2.0.a1 Prupe.2G267900_v2.0.a1 Prupe.2G267900_v2.0.a1 Prupe.2G267900_v2.0.a1
pyrus_communis	pycom07g21510
rosa_chinensis	RchiOBHm_Chr1g0372931
rosa_laevigata	RLG00000026865
rosa_multiflora	Rmu_sc0022491.1_g000001 Rmu_sc0026741.1_g000001 Rmu_ssc0000425.1_g000016
rosa_roxburghii	Rroxscaffold_4G00284600
rosa_rugosa	Rorug01G0375000
rosa_samantha	Rh1AG383500 Rh1BG347400 Rh1CG360800 Rh1DG378300
rosa_wichuraiana	Rw1G033790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	489
AcuI	CTGAAG	3 cut(s)	281, 716, 759
AdeI	CACNNNGTG	1 cut(s)	619
AfaI	GTAC	6 cut(s)	81, 181, 305, 384, 432, 545
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflII	CTTAAG	1 cut(s)	683
AgsI	TTSAA	3 cut(s)	151, 192, 576
AhlI	ACTAGT	1 cut(s)	433
AjnI	CCWGG	2 cut(s)	386, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AluBI	AGCT	6 cut(s)	625, 654, 745, 770, 795, 866
AluI	AGCT	6 cut(s)	625, 654, 745, 770, 795, 866
Alw21I	GWGCWC	3 cut(s)	566, 656, 747
Alw26I	GTCTC	1 cut(s)	727
Alw44I	GTGCAC	1 cut(s)	562
Ama87I	CYCGRG	1 cut(s)	26
AoxI	GGCC	2 cut(s)	315, 389
ApaLI	GTGCAC	1 cut(s)	562
ApeKI	GCWGC	3 cut(s)	246, 770, 866
ApoI	RAATTY	1 cut(s)	489
AseI	ATTAAT	1 cut(s)	477
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	10
AvaI	CYCGRG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	391
BanII	GRGCYC	2 cut(s)	656, 747
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	3 cut(s)	566, 656, 747
BbvI	GCAGC	3 cut(s)	233, 757, 853
BcgI	CGANNNNNNTGC	2 cut(s)	543, 577
BciT130I	CCWGG	2 cut(s)	388, 813
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	727
BcuI	ACTAGT	1 cut(s)	433
BfaI	CTAG	2 cut(s)	434, 848
BfmI	CTRYAG	1 cut(s)	861
BfrI	CTTAAG	1 cut(s)	683
BisI	GCNGC	3 cut(s)	247, 771, 867
BlsI	GCNGC	3 cut(s)	248, 772, 868
BmcAI	AGTACT	2 cut(s)	432, 545
Bme1390I	CCNGG	3 cut(s)	125, 388, 813
BmeT110I	CYCGRG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	3 cut(s)	125, 388, 813
BmsI	GCATC	2 cut(s)	80, 726
BpiI	GAAGAC	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	51, 75, 197, 386
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	571, 802
Bse3DI	GCAATG	2 cut(s)	118, 133
BseBI	CCWGG	2 cut(s)	388, 813
BseDI	CCNNGG	4 cut(s)	51, 75, 197, 386
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	2 cut(s)	118, 133
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	571, 802
BseRI	GAGGAG	2 cut(s)	249, 471
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	3 cut(s)	233, 757, 853
BshFI	GGCC	2 cut(s)	317, 391
BsiHKAI	GWGCWC	3 cut(s)	566, 656, 747
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	727
BsmBI	CGTCTC	1 cut(s)	727
BsmFI	GGGAC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	270
BsnI	GGCC	2 cut(s)	317, 391
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	3 cut(s)	566, 656, 747
Bsp1407I	TGTACA	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	844
Bsp19I	CCATGG	1 cut(s)	197
BspANI	GGCC	2 cut(s)	317, 391
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	735
BspTI	CTTAAG	1 cut(s)	683
BsrDI	GCAATG	2 cut(s)	118, 133
BsrGI	TGTACA	1 cut(s)	179
BsrI	ACTGG	2 cut(s)	571, 802
BssECI	CCNNGG	4 cut(s)	51, 75, 197, 386
BssMI	GATC	1 cut(s)	844
BssT1I	CCWWGG	2 cut(s)	75, 197
Bst2UI	CCWGG	2 cut(s)	388, 813
Bst4CI	ACNGT	6 cut(s)	55, 617, 632, 668, 821, 878
Bst6I	CTCTTC	2 cut(s)	732, 735
BstAFI	CTTAAG	1 cut(s)	683
BstAUI	TGTACA	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	408, 595
BstDSI	CCRYGG	2 cut(s)	51, 197
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	847
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	1 cut(s)	844
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	2 cut(s)	388, 813
BstSCI	CCNGG	3 cut(s)	123, 386, 811
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	1 cut(s)	566
BstV1I	GCAGC	3 cut(s)	233, 757, 853
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	317, 391
BtgI	CCRYGG	2 cut(s)	51, 197
BtsCI	GGATG	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	5 cut(s)	509, 564, 566, 613, 708
Cac8I	GCNNGC	1 cut(s)	393
Csp6I	GTAC	6 cut(s)	80, 180, 304, 383, 431, 544
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	4 cut(s)	177, 186, 198, 368
CviQI	GTAC	6 cut(s)	80, 180, 304, 383, 431, 544
DdeI	CTNAG	2 cut(s)	408, 595
DpnI	GATC	1 cut(s)	846
DpnII	GATC	1 cut(s)	844
DraIII	CACNNNGTG	1 cut(s)	619
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	732, 735
EarI	CTCTTC	2 cut(s)	732, 735
Ecl136II	GAGCTC	2 cut(s)	654, 745
Eco130I	CCWWGG	2 cut(s)	75, 197
Eco24I	GRGCYC	2 cut(s)	656, 747
Eco53kI	GAGCTC	2 cut(s)	654, 745
Eco57I	CTGAAG	3 cut(s)	281, 716, 759
Eco88I	CYCGRG	1 cut(s)	26
EcoICRI	GAGCTC	2 cut(s)	654, 745
EcoRII	CCWGG	2 cut(s)	386, 811
EcoT14I	CCWWGG	2 cut(s)	75, 197
EcoT38I	GRGCYC	2 cut(s)	656, 747
ErhI	CCWWGG	2 cut(s)	75, 197
Esp3I	CGTCTC	1 cut(s)	727
FaeI	CATG	4 cut(s)	180, 189, 201, 371
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	4 cut(s)	176, 185, 197, 367
Fnu4HI	GCNGC	3 cut(s)	247, 771, 867
FokI	GGATG	1 cut(s)	58
FriOI	GRGCYC	2 cut(s)	656, 747
Fsp4HI	GCNGC	3 cut(s)	247, 771, 867
FspBI	CTAG	2 cut(s)	434, 848
GluI	GCNGC	3 cut(s)	247, 771, 867
HaeIII	GGCC	2 cut(s)	317, 391
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	4 cut(s)	180, 189, 201, 371
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	332, 851
HpaII	CCGG	1 cut(s)	124
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	4 cut(s)	58, 383, 439, 564
Hpy188I	TCNGA	8 cut(s)	300, 337, 351, 358, 409, 485, 592, 884
Hpy188III	TCNNGA	3 cut(s)	533, 842, 848
Hpy8I	GTNNAC	4 cut(s)	58, 383, 439, 564
HpyAV	CCTTC	3 cut(s)	305, 414, 879
HpyCH4III	ACNGT	6 cut(s)	55, 617, 632, 668, 821, 878
HpyCH4V	TGCA	5 cut(s)	101, 564, 773, 784, 869
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	2 cut(s)	408, 595
Hsp92II	CATG	4 cut(s)	180, 189, 201, 371
Kzo9I	GATC	1 cut(s)	844
LguI	GCTCTTC	1 cut(s)	735
LmnI	GCTCC	1 cut(s)	212
Lsp1109I	GCAGC	3 cut(s)	233, 757, 853
LweI	GCATC	2 cut(s)	80, 726
MaeI	CTAG	2 cut(s)	434, 848
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	846
MboI	GATC	1 cut(s)	844
MboII	GAAGA	6 cut(s)	101, 548, 719, 722, 752, 846
MhlI	GDGCHC	3 cut(s)	566, 656, 747
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	3 cut(s)	5, 324, 489
MluNI	TGGCCA	1 cut(s)	391
MnlI	CCTC	7 cut(s)	75, 220, 227, 307, 449, 452, 868
Mox20I	TGGCCA	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	7 cut(s)	113, 323, 477, 525, 663, 684, 806
MslI	CAYNNNNRTG	2 cut(s)	366, 553
Msp20I	TGGCCA	1 cut(s)	391
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	3 cut(s)	125, 388, 813
Mva1269I	GAATGC	1 cut(s)	270
MvaI	CCWGG	2 cut(s)	388, 813
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	1 cut(s)	844
NlaIII	CATG	4 cut(s)	180, 189, 201, 371
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	1 cut(s)	16
PciSI	GCTCTTC	1 cut(s)	735
PctI	GAATGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	332, 851
PkrI	GCNGC	3 cut(s)	248, 772, 868
PshBI	ATTAAT	1 cut(s)	477
Psp124BI	GAGCTC	2 cut(s)	656, 747
Psp6I	CCWGG	2 cut(s)	386, 811
PspGI	CCWGG	2 cut(s)	386, 811
PspN4I	GGNNCC	1 cut(s)	463
PsrI	GAACNNNNNNTAC	2 cut(s)	172, 204
RsaI	GTAC	6 cut(s)	81, 181, 305, 384, 432, 545
RsaNI	GTAC	6 cut(s)	80, 180, 304, 383, 431, 544
RseI	CAYNNNNRTG	2 cut(s)	366, 553
SacI	GAGCTC	2 cut(s)	656, 747
SapI	GCTCTTC	1 cut(s)	735
SaqAI	TTAA	7 cut(s)	113, 323, 477, 525, 663, 684, 806
SatI	GCNGC	3 cut(s)	247, 771, 867
Sau3AI	GATC	1 cut(s)	844
ScaI	AGTACT	2 cut(s)	432, 545
ScrFI	CCNGG	3 cut(s)	125, 388, 813
SduI	GDGCHC	3 cut(s)	566, 656, 747
SfaNI	GCATC	2 cut(s)	80, 726
SfcI	CTRYAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	2 cut(s)	366, 553
SmlI	CTYRAG	2 cut(s)	66, 683
SmoI	CTYRAG	2 cut(s)	66, 683
SpeI	ACTAGT	1 cut(s)	433
Sse9I	AATT	3 cut(s)	5, 324, 489
SspI	AATATT	2 cut(s)	111, 751
SspMI	CTAG	2 cut(s)	434, 848
SstI	GAGCTC	2 cut(s)	656, 747
StyD4I	CCNGG	3 cut(s)	123, 386, 811
StyI	CCWWGG	2 cut(s)	75, 197
TaaI	ACNGT	6 cut(s)	55, 617, 632, 668, 821, 878
TaqI	TCGA	2 cut(s)	427, 553
TasI	AATT	3 cut(s)	5, 324, 489
TatI	WGTACW	4 cut(s)	179, 303, 430, 543
TfiI	GAWTC	2 cut(s)	332, 851
Tru1I	TTAA	7 cut(s)	113, 323, 477, 525, 663, 684, 806
Tru9I	TTAA	7 cut(s)	113, 323, 477, 525, 663, 684, 806
TscAI	CASTG	5 cut(s)	509, 566, 571, 620, 715
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	3 cut(s)	246, 770, 866
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	5 cut(s)	17, 168, 263, 384, 596
TspRI	CASTG	5 cut(s)	509, 566, 571, 620, 715
Vha464I	CTTAAG	1 cut(s)	683
VneI	GTGCAC	1 cut(s)	562
VspI	ATTAAT	1 cut(s)	477
XapI	RAATTY	1 cut(s)	489
XbaI	TCTAGA	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	809
XspI	CTAG	2 cut(s)	434, 848
ZrmI	AGTACT	2 cut(s)	432, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.