Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05100 |
| malus_domestica | MD13G1224800.v1.1 |
| prunus_persica | Prupe.1G051400_v2.0.a1 |
| pyrus_communis | pycom13g19840 |
| rosa_chinensis | RchiOBHm_Chr4g0396021 |
| rosa_laevigata | RLG00000009580 |
| rosa_multiflora | Rmu_sc0030438.1_g000001 Rmu_sc0031838.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00340810 |
| rosa_rugosa | Rorug03G0352900 |
| rosa_samantha | Rh4BG063500 Rh4CG070100 Rh4DG060000 |
| rosa_wichuraiana | Rw4G005240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1587 |
| AarI | CACCTGC | 1 cut(s) | 970 |
| Acc36I | ACCTGC | 2 cut(s) | 970, 1338 |
| AccBSI | CCGCTC | 1 cut(s) | 126 |
| AccI | GTMKAC | 1 cut(s) | 392 |
| AccII | CGCG | 3 cut(s) | 155, 157, 324 |
| AccIII | TCCGGA | 1 cut(s) | 969 |
| AciI | CCGC | 2 cut(s) | 124, 213 |
| AclWI | GGATC | 1 cut(s) | 1452 |
| AcsI | RAATTY | 5 cut(s) | 505, 790, 1071, 1483, 1642 |
| AcuI | CTGAAG | 2 cut(s) | 89, 1274 |
| AfaI | GTAC | 1 cut(s) | 1785 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 450, 1326 |
| AflIII | ACRYGT | 1 cut(s) | 1137 |
| AgsI | TTSAA | 7 cut(s) | 229, 343, 673, 790, 1224, 1601, 1623 |
| AjnI | CCWGG | 2 cut(s) | 1510, 1723 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 764, 796 |
| AleI | CACNNNNGTG | 1 cut(s) | 1726 |
| Alw26I | GTCTC | 2 cut(s) | 466, 859 |
| AlwI | GGATC | 1 cut(s) | 1452 |
| Aor13HI | TCCGGA | 1 cut(s) | 969 |
| AoxI | GGCC | 2 cut(s) | 172, 1369 |
| ApoI | RAATTY | 5 cut(s) | 505, 790, 1071, 1483, 1642 |
| AseI | ATTAAT | 1 cut(s) | 303 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspLEI | GCGC | 3 cut(s) | 70, 157, 882 |
| AspS9I | GGNCC | 1 cut(s) | 1514 |
| AsuC2I | CCSGG | 1 cut(s) | 445 |
| AsuHPI | GGTGA | 4 cut(s) | 83, 170, 731, 1268 |
| AvaII | GGWCC | 1 cut(s) | 1514 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 483, 516 |
| BanII | GRGCYC | 2 cut(s) | 273, 1849 |
| BbsI | GAAGAC | 2 cut(s) | 247, 1724 |
| BccI | CCATC | 4 cut(s) | 910, 983, 1423, 1659 |
| BceAI | ACGGC | 1 cut(s) | 927 |
| BciT130I | CCWGG | 2 cut(s) | 1512, 1725 |
| BciVI | GTATCC | 1 cut(s) | 484 |
| BclI | TGATCA | 1 cut(s) | 36 |
| BcnI | CCSGG | 1 cut(s) | 445 |
| BcoDI | GTCTC | 2 cut(s) | 466, 859 |
| BfaI | CTAG | 4 cut(s) | 1580, 1604, 1659, 1882 |
| BfmI | CTRYAG | 2 cut(s) | 1381, 1503 |
| BfuAI | ACCTGC | 2 cut(s) | 970, 1338 |
| BfuI | GTATCC | 1 cut(s) | 484 |
| Bme1390I | CCNGG | 3 cut(s) | 445, 1512, 1725 |
| Bme18I | GGWCC | 1 cut(s) | 1514 |
| BmgT120I | GGNCC | 1 cut(s) | 1514 |
| BmiI | GGNNCC | 2 cut(s) | 1562, 1846 |
| BmrFI | CCNGG | 3 cut(s) | 445, 1512, 1725 |
| BmsI | GCATC | 6 cut(s) | 966, 1195, 1275, 1488, 1646, 1803 |
| BpiI | GAAGAC | 2 cut(s) | 247, 1724 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1175, 1207 |
| BpuMI | CCSGG | 1 cut(s) | 445 |
| BsaBI | GATNNNNATC | 1 cut(s) | 807 |
| BsaJI | CCNNGG | 1 cut(s) | 1724 |
| BsaWI | WCCGGW | 2 cut(s) | 969, 1306 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 450, 1326 |
| Bse1I | ACTGG | 1 cut(s) | 1753 |
| Bse3DI | GCAATG | 2 cut(s) | 377, 1129 |
| Bse8I | GATNNNNATC | 1 cut(s) | 807 |
| BseAI | TCCGGA | 1 cut(s) | 969 |
| BseBI | CCWGG | 2 cut(s) | 1512, 1725 |
| BseDI | CCNNGG | 1 cut(s) | 1724 |
| BseGI | GGATG | 6 cut(s) | 391, 639, 808, 1192, 1210, 1786 |
| BseJI | GATNNNNATC | 1 cut(s) | 807 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 450, 1326 |
| BseMI | GCAATG | 2 cut(s) | 377, 1129 |
| BseMII | CTCAG | 2 cut(s) | 567, 1647 |
| BseNI | ACTGG | 1 cut(s) | 1753 |
| BseRI | GAGGAG | 1 cut(s) | 676 |
| BseYI | CCCAGC | 1 cut(s) | 1030 |
| BsgI | GTGCAG | 1 cut(s) | 953 |
| Bsh1236I | CGCG | 3 cut(s) | 155, 157, 324 |
| BshFI | GGCC | 2 cut(s) | 174, 1371 |
| BsiSI | CCGG | 5 cut(s) | 383, 420, 444, 970, 1307 |
| BslFI | GGGAC | 2 cut(s) | 446, 1682 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 450, 1326 |
| BsmAI | GTCTC | 2 cut(s) | 466, 859 |
| BsmBI | CGTCTC | 1 cut(s) | 859 |
| BsmFI | GGGAC | 2 cut(s) | 446, 1682 |
| BsnI | GGCC | 2 cut(s) | 174, 1371 |
| Bsp1286I | GDGCHC | 2 cut(s) | 273, 1849 |
| Bsp13I | TCCGGA | 1 cut(s) | 969 |
| Bsp143I | GATC | 6 cut(s) | 36, 204, 1444, 1457, 1471, 1803 |
| BspACI | CCGC | 2 cut(s) | 124, 213 |
| BspANI | GGCC | 2 cut(s) | 174, 1371 |
| BspCNI | CTCAG | 2 cut(s) | 568, 1646 |
| BspEI | TCCGGA | 1 cut(s) | 969 |
| BspFNI | CGCG | 3 cut(s) | 155, 157, 324 |
| BspHI | TCATGA | 2 cut(s) | 1105, 1858 |
| BspLI | GGNNCC | 2 cut(s) | 1562, 1846 |
| BspMI | ACCTGC | 2 cut(s) | 970, 1338 |
| BspPI | GGATC | 1 cut(s) | 1452 |
| BsrBI | CCGCTC | 1 cut(s) | 126 |
| BsrDI | GCAATG | 2 cut(s) | 377, 1129 |
| BsrI | ACTGG | 1 cut(s) | 1753 |
| BssECI | CCNNGG | 1 cut(s) | 1724 |
| BssMI | GATC | 6 cut(s) | 36, 204, 1444, 1457, 1471, 1803 |
| BssNAI | GTATAC | 1 cut(s) | 393 |
| Bst1107I | GTATAC | 1 cut(s) | 393 |
| Bst2UI | CCWGG | 2 cut(s) | 1512, 1725 |
| Bst4CI | ACNGT | 2 cut(s) | 496, 691 |
| Bst6I | CTCTTC | 3 cut(s) | 14, 135, 458 |
| BstC8I | GCNNGC | 1 cut(s) | 19 |
| BstDEI | CTNAG | 3 cut(s) | 576, 648, 1633 |
| BstF5I | GGATG | 6 cut(s) | 391, 639, 808, 1192, 1210, 1786 |
| BstFNI | CGCG | 3 cut(s) | 155, 157, 324 |
| BstHHI | GCGC | 3 cut(s) | 70, 157, 882 |
| BstKTI | GATC | 6 cut(s) | 39, 207, 1447, 1460, 1474, 1806 |
| BstMAI | GTCTC | 2 cut(s) | 466, 859 |
| BstMBI | GATC | 6 cut(s) | 36, 204, 1444, 1457, 1471, 1803 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 76, 911 |
| BstNI | CCWGG | 2 cut(s) | 1512, 1725 |
| BstNSI | RCATGY | 3 cut(s) | 1049, 1141, 1573 |
| BstSCI | CCNGG | 3 cut(s) | 443, 1510, 1723 |
| BstSFI | CTRYAG | 2 cut(s) | 1381, 1503 |
| BstUI | CGCG | 3 cut(s) | 155, 157, 324 |
| BstV2I | GAAGAC | 2 cut(s) | 247, 1724 |
| BstX2I | RGATCY | 1 cut(s) | 1444 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1524 |
| BstYI | RGATCY | 1 cut(s) | 1444 |
| BstZ17I | GTATAC | 1 cut(s) | 393 |
| BsuI | GTATCC | 1 cut(s) | 484 |
| BsuRI | GGCC | 2 cut(s) | 174, 1371 |
| BtgZI | GCGATG | 2 cut(s) | 178, 929 |
| BtsCI | GGATG | 6 cut(s) | 391, 639, 808, 1192, 1210, 1786 |
| BtsI | GCAGTG | 1 cut(s) | 63 |
| BtsIMutI | CAGTG | 2 cut(s) | 63, 1425 |
| BveI | ACCTGC | 2 cut(s) | 970, 1338 |
| Cac8I | GCNNGC | 1 cut(s) | 19 |
| CciI | TCATGA | 2 cut(s) | 1105, 1858 |
| CfoI | GCGC | 3 cut(s) | 70, 157, 882 |
| Cfr13I | GGNCC | 1 cut(s) | 1514 |
| CseI | GACGC | 2 cut(s) | 301, 383 |
| CsiI | ACCWGGT | 1 cut(s) | 1510 |
| Csp6I | GTAC | 1 cut(s) | 1784 |
| CviQI | GTAC | 1 cut(s) | 1784 |
| DdeI | CTNAG | 3 cut(s) | 576, 648, 1633 |
| DpnI | GATC | 6 cut(s) | 38, 206, 1446, 1459, 1473, 1805 |
| DpnII | GATC | 6 cut(s) | 36, 204, 1444, 1457, 1471, 1803 |
| Eam1104I | CTCTTC | 3 cut(s) | 14, 135, 458 |
| EarI | CTCTTC | 3 cut(s) | 14, 135, 458 |
| Eco147I | AGGCCT | 1 cut(s) | 1371 |
| Eco24I | GRGCYC | 2 cut(s) | 273, 1849 |
| Eco32I | GATATC | 1 cut(s) | 1230 |
| Eco47I | GGWCC | 1 cut(s) | 1514 |
| Eco57I | CTGAAG | 2 cut(s) | 89, 1274 |
| EcoRI | GAATTC | 1 cut(s) | 505 |
| EcoRII | CCWGG | 2 cut(s) | 1510, 1723 |
| EcoRV | GATATC | 1 cut(s) | 1230 |
| EcoT38I | GRGCYC | 2 cut(s) | 273, 1849 |
| Esp3I | CGTCTC | 1 cut(s) | 859 |
| FaqI | GGGAC | 2 cut(s) | 446, 1682 |
| FbaI | TGATCA | 1 cut(s) | 36 |
| FblI | GTMKAC | 1 cut(s) | 392 |
| FokI | GGATG | 6 cut(s) | 398, 646, 815, 1199, 1217, 1773 |
| FriOI | GRGCYC | 2 cut(s) | 273, 1849 |
| FspBI | CTAG | 4 cut(s) | 1580, 1604, 1659, 1882 |
| GlaI | GCGC | 3 cut(s) | 69, 156, 881 |
| GsaI | CCCAGC | 1 cut(s) | 1034 |
| HaeIII | GGCC | 2 cut(s) | 174, 1371 |
| HapII | CCGG | 5 cut(s) | 383, 420, 444, 970, 1307 |
| HgaI | GACGC | 2 cut(s) | 301, 383 |
| HhaI | GCGC | 3 cut(s) | 70, 157, 882 |
| Hin6I | GCGC | 3 cut(s) | 68, 155, 880 |
| HinP1I | GCGC | 3 cut(s) | 68, 155, 880 |
| HpaII | CCGG | 5 cut(s) | 383, 420, 444, 970, 1307 |
| HphI | GGTGA | 4 cut(s) | 83, 170, 731, 1268 |
| Hpy166II | GTNNAC | 3 cut(s) | 328, 393, 687 |
| Hpy188I | TCNGA | 3 cut(s) | 84, 802, 949 |
| Hpy188III | TCNNGA | 6 cut(s) | 246, 970, 1106, 1461, 1659, 1859 |
| Hpy8I | GTNNAC | 3 cut(s) | 328, 393, 687 |
| Hpy99I | CGWCG | 1 cut(s) | 683 |
| HpyCH4III | ACNGT | 2 cut(s) | 496, 691 |
| HpyCH4IV | ACGT | 3 cut(s) | 395, 726, 1671 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 76, 911 |
| HpyF3I | CTNAG | 3 cut(s) | 576, 648, 1633 |
| HpySE526I | ACGT | 3 cut(s) | 395, 726, 1671 |
| HspAI | GCGC | 3 cut(s) | 68, 155, 880 |
| Kpn2I | TCCGGA | 1 cut(s) | 969 |
| Ksp22I | TGATCA | 1 cut(s) | 36 |
| Kzo9I | GATC | 6 cut(s) | 36, 204, 1444, 1457, 1471, 1803 |
| LmnI | GCTCC | 4 cut(s) | 75, 751, 1155, 1844 |
| LweI | GCATC | 6 cut(s) | 966, 1195, 1275, 1488, 1646, 1803 |
| MabI | ACCWGGT | 1 cut(s) | 1510 |
| MaeI | CTAG | 4 cut(s) | 1580, 1604, 1659, 1882 |
| MaeII | ACGT | 3 cut(s) | 395, 726, 1671 |
| MaeIII | GTNAC | 3 cut(s) | 371, 484, 1537 |
| MalI | GATC | 6 cut(s) | 38, 206, 1446, 1459, 1473, 1805 |
| MbiI | CCGCTC | 1 cut(s) | 126 |
| MboI | GATC | 6 cut(s) | 36, 204, 1444, 1457, 1471, 1803 |
| MboII | GAAGA | 9 cut(s) | 95, 122, 247, 475, 985, 998, 1647, 1674, 1729 |
| MfeI | CAATTG | 1 cut(s) | 264 |
| MflI | RGATCY | 1 cut(s) | 1444 |
| MhlI | GDGCHC | 2 cut(s) | 273, 1849 |
| MlyI | GAGTC | 6 cut(s) | 168, 243, 254, 706, 1184, 1750 |
| MmeI | TCCRAC | 2 cut(s) | 618, 1715 |
| MroI | TCCGGA | 1 cut(s) | 969 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 6 cut(s) | 303, 1055, 1130, 1410, 1451, 1481 |
| MslI | CAYNNNNRTG | 3 cut(s) | 762, 1493, 1726 |
| MspI | CCGG | 5 cut(s) | 383, 420, 444, 970, 1307 |
| MspR9I | CCNGG | 3 cut(s) | 445, 1512, 1725 |
| MunI | CAATTG | 1 cut(s) | 264 |
| MvaI | CCWGG | 2 cut(s) | 1512, 1725 |
| MvnI | CGCG | 3 cut(s) | 155, 157, 324 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 76, 911 |
| NciI | CCSGG | 1 cut(s) | 445 |
| NdeII | GATC | 6 cut(s) | 36, 204, 1444, 1457, 1471, 1803 |
| NlaIV | GGNNCC | 2 cut(s) | 1562, 1846 |
| NmuCI | GTSAC | 1 cut(s) | 371 |
| NspI | RCATGY | 3 cut(s) | 1049, 1141, 1573 |
| OliI | CACNNNNGTG | 1 cut(s) | 1726 |
| PagI | TCATGA | 2 cut(s) | 1105, 1858 |
| PaqCI | CACCTGC | 1 cut(s) | 970 |
| PceI | AGGCCT | 1 cut(s) | 1371 |
| PciI | ACATGT | 1 cut(s) | 1137 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 407, 500 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 6 cut(s) | 961, 1102, 1299, 1576, 1799, 1853 |
| PflFI | GACNNNGTC | 1 cut(s) | 437 |
| PleI | GAGTC | 6 cut(s) | 167, 243, 254, 705, 1184, 1750 |
| PpsI | GAGTC | 6 cut(s) | 167, 243, 254, 705, 1184, 1750 |
| PscI | ACATGT | 1 cut(s) | 1137 |
| PshBI | ATTAAT | 1 cut(s) | 303 |
| PsiI | TTATAA | 1 cut(s) | 1587 |
| Psp6I | CCWGG | 2 cut(s) | 1510, 1723 |
| PspFI | CCCAGC | 1 cut(s) | 1030 |
| PspGI | CCWGG | 2 cut(s) | 1510, 1723 |
| PspN4I | GGNNCC | 2 cut(s) | 1562, 1846 |
| PspPI | GGNCC | 1 cut(s) | 1514 |
| PsuI | RGATCY | 1 cut(s) | 1444 |
| PsyI | GACNNNGTC | 1 cut(s) | 437 |
| RsaI | GTAC | 1 cut(s) | 1785 |
| RsaNI | GTAC | 1 cut(s) | 1784 |
| RseI | CAYNNNNRTG | 3 cut(s) | 762, 1493, 1726 |
| SaqAI | TTAA | 6 cut(s) | 303, 1055, 1130, 1410, 1451, 1481 |
| Sau3AI | GATC | 6 cut(s) | 36, 204, 1444, 1457, 1471, 1803 |
| Sau96I | GGNCC | 1 cut(s) | 1514 |
| SchI | GAGTC | 6 cut(s) | 168, 243, 254, 706, 1184, 1750 |
| ScrFI | CCNGG | 3 cut(s) | 445, 1512, 1725 |
| SduI | GDGCHC | 2 cut(s) | 273, 1849 |
| SexAI | ACCWGGT | 1 cut(s) | 1510 |
| SfaNI | GCATC | 6 cut(s) | 966, 1195, 1275, 1488, 1646, 1803 |
| SfcI | CTRYAG | 2 cut(s) | 1381, 1503 |
| SinI | GGWCC | 1 cut(s) | 1514 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 762, 1493, 1726 |
| SseBI | AGGCCT | 1 cut(s) | 1371 |
| SsiI | CCGC | 2 cut(s) | 124, 213 |
| SspI | AATATT | 2 cut(s) | 27, 1874 |
| SspMI | CTAG | 4 cut(s) | 1580, 1604, 1659, 1882 |
| StuI | AGGCCT | 1 cut(s) | 1371 |
| StyD4I | CCNGG | 3 cut(s) | 443, 1510, 1723 |
| TaaI | ACNGT | 2 cut(s) | 496, 691 |
| TaiI | ACGT | 3 cut(s) | 398, 729, 1674 |
| TaqI | TCGA | 7 cut(s) | 258, 354, 401, 695, 1456, 1474, 1802 |
| TatI | WGTACW | 1 cut(s) | 1783 |
| TfiI | GAWTC | 6 cut(s) | 961, 1102, 1299, 1576, 1799, 1853 |
| Tru1I | TTAA | 6 cut(s) | 303, 1055, 1130, 1410, 1451, 1481 |
| Tru9I | TTAA | 6 cut(s) | 303, 1055, 1130, 1410, 1451, 1481 |
| TscAI | CASTG | 2 cut(s) | 70, 1425 |
| TseFI | GTSAC | 1 cut(s) | 371 |
| Tsp45I | GTSAC | 1 cut(s) | 371 |
| TspGWI | ACGGA | 1 cut(s) | 503 |
| TspRI | CASTG | 2 cut(s) | 70, 1425 |
| Tth111I | GACNNNGTC | 1 cut(s) | 437 |
| VpaK11BI | GGWCC | 1 cut(s) | 1514 |
| VspI | ATTAAT | 1 cut(s) | 303 |
| XapI | RAATTY | 5 cut(s) | 505, 790, 1071, 1483, 1642 |
| XbaI | TCTAGA | 1 cut(s) | 1658 |
| XceI | RCATGY | 3 cut(s) | 1049, 1141, 1573 |
| XmiI | GTMKAC | 1 cut(s) | 392 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 4 cut(s) | 1580, 1604, 1659, 1882 |