Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g05100 |
| malus_domestica | MD13G1224800.v1.1 |
| prunus_persica | Prupe.1G051400_v2.0.a1 |
| pyrus_communis | pycom13g19840 |
| rosa_chinensis | RchiOBHm_Chr4g0396021 |
| rosa_laevigata | RLG00000009580 |
| rosa_multiflora | Rmu_sc0030438.1_g000001 Rmu_sc0031838.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00340810 |
| rosa_rugosa | Rorug03G0352900 |
| rosa_samantha | Rh4BG063500 Rh4CG070100 Rh4DG060000 |
| rosa_wichuraiana | Rw4G005240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 31 |
| AccI | GTMKAC | 1 cut(s) | 297 |
| AccII | CGCG | 3 cut(s) | 60, 62, 229 |
| AciI | CCGC | 2 cut(s) | 29, 118 |
| AcsI | RAATTY | 1 cut(s) | 410 |
| AfaI | GTAC | 1 cut(s) | 648 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 355 |
| AgsI | TTSAA | 3 cut(s) | 134, 248, 578 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 669, 701 |
| AluBI | AGCT | 3 cut(s) | 14, 110, 659 |
| AluI | AGCT | 3 cut(s) | 14, 110, 659 |
| Alw26I | GTCTC | 1 cut(s) | 764 |
| AoxI | GGCC | 1 cut(s) | 77 |
| ApoI | RAATTY | 1 cut(s) | 410 |
| AseI | ATTAAT | 1 cut(s) | 208 |
| AspLEI | GCGC | 2 cut(s) | 62, 787 |
| AsuC2I | CCSGG | 1 cut(s) | 350 |
| AsuHPI | GGTGA | 1 cut(s) | 636 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 388, 421 |
| BanII | GRGCYC | 1 cut(s) | 178 |
| BbsI | GAAGAC | 1 cut(s) | 152 |
| BccI | CCATC | 1 cut(s) | 815 |
| BceAI | ACGGC | 1 cut(s) | 832 |
| BciVI | GTATCC | 1 cut(s) | 389 |
| BcnI | CCSGG | 1 cut(s) | 350 |
| BcoDI | GTCTC | 1 cut(s) | 764 |
| BfuI | GTATCC | 1 cut(s) | 389 |
| Bme1390I | CCNGG | 1 cut(s) | 350 |
| BmrFI | CCNGG | 1 cut(s) | 350 |
| BpiI | GAAGAC | 1 cut(s) | 152 |
| BpuMI | CCSGG | 1 cut(s) | 350 |
| BsaBI | GATNNNNATC | 1 cut(s) | 712 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 355 |
| Bse3DI | GCAATG | 1 cut(s) | 282 |
| Bse8I | GATNNNNATC | 1 cut(s) | 712 |
| BseGI | GGATG | 4 cut(s) | 296, 544, 635, 713 |
| BseJI | GATNNNNATC | 1 cut(s) | 712 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 355 |
| BseMI | GCAATG | 1 cut(s) | 282 |
| BseMII | CTCAG | 1 cut(s) | 472 |
| BseYI | CCCAGC | 1 cut(s) | 140 |
| Bsh1236I | CGCG | 3 cut(s) | 60, 62, 229 |
| BshFI | GGCC | 1 cut(s) | 79 |
| BsiSI | CCGG | 2 cut(s) | 288, 349 |
| BslFI | GGGAC | 1 cut(s) | 351 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 355 |
| BsmAI | GTCTC | 1 cut(s) | 764 |
| BsmBI | CGTCTC | 1 cut(s) | 764 |
| BsmFI | GGGAC | 1 cut(s) | 351 |
| BsnI | GGCC | 1 cut(s) | 79 |
| Bsp1286I | GDGCHC | 1 cut(s) | 178 |
| BspACI | CCGC | 2 cut(s) | 29, 118 |
| BspANI | GGCC | 1 cut(s) | 79 |
| BspCNI | CTCAG | 1 cut(s) | 473 |
| BspFNI | CGCG | 3 cut(s) | 60, 62, 229 |
| BsrBI | CCGCTC | 1 cut(s) | 31 |
| BsrDI | GCAATG | 1 cut(s) | 282 |
| BssNAI | GTATAC | 1 cut(s) | 298 |
| Bst1107I | GTATAC | 1 cut(s) | 298 |
| Bst4CI | ACNGT | 2 cut(s) | 401, 596 |
| Bst6I | CTCTTC | 2 cut(s) | 40, 363 |
| BstDEI | CTNAG | 2 cut(s) | 481, 553 |
| BstF5I | GGATG | 4 cut(s) | 296, 544, 635, 713 |
| BstFNI | CGCG | 3 cut(s) | 60, 62, 229 |
| BstHHI | GCGC | 2 cut(s) | 62, 787 |
| BstMAI | GTCTC | 1 cut(s) | 764 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 816 |
| BstSCI | CCNGG | 1 cut(s) | 348 |
| BstUI | CGCG | 3 cut(s) | 60, 62, 229 |
| BstV2I | GAAGAC | 1 cut(s) | 152 |
| BstZ17I | GTATAC | 1 cut(s) | 298 |
| BsuI | GTATCC | 1 cut(s) | 389 |
| BsuRI | GGCC | 1 cut(s) | 79 |
| BtgZI | GCGATG | 2 cut(s) | 83, 834 |
| BtsCI | GGATG | 4 cut(s) | 296, 544, 635, 713 |
| CfoI | GCGC | 2 cut(s) | 62, 787 |
| CseI | GACGC | 2 cut(s) | 206, 288 |
| Csp6I | GTAC | 1 cut(s) | 647 |
| CviAII | CATG | 3 cut(s) | 75, 363, 788 |
| CviJI | RGCY | 8 cut(s) | 14, 79, 110, 144, 176, 581, 659, 832 |
| CviKI_1 | RGCY | 8 cut(s) | 14, 79, 110, 144, 176, 581, 659, 832 |
| CviQI | GTAC | 1 cut(s) | 647 |
| DdeI | CTNAG | 2 cut(s) | 481, 553 |
| Eam1104I | CTCTTC | 2 cut(s) | 40, 363 |
| EarI | CTCTTC | 2 cut(s) | 40, 363 |
| Eco24I | GRGCYC | 1 cut(s) | 178 |
| EcoRI | GAATTC | 1 cut(s) | 410 |
| EcoT38I | GRGCYC | 1 cut(s) | 178 |
| Esp3I | CGTCTC | 1 cut(s) | 764 |
| FaeI | CATG | 3 cut(s) | 78, 366, 791 |
| FaqI | GGGAC | 1 cut(s) | 351 |
| FatI | CATG | 3 cut(s) | 74, 362, 787 |
| FblI | GTMKAC | 1 cut(s) | 297 |
| FokI | GGATG | 4 cut(s) | 303, 551, 642, 720 |
| FriOI | GRGCYC | 1 cut(s) | 178 |
| GlaI | GCGC | 2 cut(s) | 61, 786 |
| GsaI | CCCAGC | 1 cut(s) | 144 |
| HaeIII | GGCC | 1 cut(s) | 79 |
| HapII | CCGG | 2 cut(s) | 288, 349 |
| HgaI | GACGC | 2 cut(s) | 206, 288 |
| HhaI | GCGC | 2 cut(s) | 62, 787 |
| Hin1II | CATG | 3 cut(s) | 78, 366, 791 |
| Hin6I | GCGC | 2 cut(s) | 60, 785 |
| HinP1I | GCGC | 2 cut(s) | 60, 785 |
| HinfI | GANTC | 4 cut(s) | 64, 154, 165, 602 |
| HpaII | CCGG | 2 cut(s) | 288, 349 |
| HphI | GGTGA | 1 cut(s) | 636 |
| Hpy166II | GTNNAC | 3 cut(s) | 233, 298, 592 |
| Hpy188I | TCNGA | 1 cut(s) | 707 |
| Hpy188III | TCNNGA | 1 cut(s) | 151 |
| Hpy8I | GTNNAC | 3 cut(s) | 233, 298, 592 |
| Hpy99I | CGWCG | 1 cut(s) | 588 |
| HpyAV | CCTTC | 1 cut(s) | 455 |
| HpyCH4III | ACNGT | 2 cut(s) | 401, 596 |
| HpyCH4IV | ACGT | 1 cut(s) | 300 |
| HpyCH4V | TGCA | 2 cut(s) | 433, 839 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 816 |
| HpyF3I | CTNAG | 2 cut(s) | 481, 553 |
| HpySE526I | ACGT | 1 cut(s) | 300 |
| Hsp92II | CATG | 3 cut(s) | 78, 366, 791 |
| HspAI | GCGC | 2 cut(s) | 60, 785 |
| LmnI | GCTCC | 1 cut(s) | 656 |
| LpnPI | CCDG | 7 cut(s) | 154, 164, 301, 310, 362, 493, 502 |
| MaeII | ACGT | 1 cut(s) | 300 |
| MaeIII | GTNAC | 2 cut(s) | 276, 389 |
| MbiI | CCGCTC | 1 cut(s) | 31 |
| MboII | GAAGA | 3 cut(s) | 27, 152, 380 |
| MfeI | CAATTG | 1 cut(s) | 169 |
| MhlI | GDGCHC | 1 cut(s) | 178 |
| MluCI | AATT | 3 cut(s) | 169, 410, 639 |
| MlyI | GAGTC | 4 cut(s) | 73, 148, 159, 611 |
| MmeI | TCCRAC | 1 cut(s) | 523 |
| MnlI | CCTC | 6 cut(s) | 78, 90, 323, 615, 620, 646 |
| MseI | TTAA | 1 cut(s) | 208 |
| MspI | CCGG | 2 cut(s) | 288, 349 |
| MspR9I | CCNGG | 1 cut(s) | 350 |
| MunI | CAATTG | 1 cut(s) | 169 |
| MvnI | CGCG | 3 cut(s) | 60, 62, 229 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 816 |
| NciI | CCSGG | 1 cut(s) | 350 |
| NlaIII | CATG | 3 cut(s) | 78, 366, 791 |
| NmuCI | GTSAC | 1 cut(s) | 276 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 312, 405 |
| PflFI | GACNNNGTC | 1 cut(s) | 342 |
| PleI | GAGTC | 4 cut(s) | 72, 148, 159, 610 |
| PpsI | GAGTC | 4 cut(s) | 72, 148, 159, 610 |
| PshBI | ATTAAT | 1 cut(s) | 208 |
| PspFI | CCCAGC | 1 cut(s) | 140 |
| PsyI | GACNNNGTC | 1 cut(s) | 342 |
| RsaI | GTAC | 1 cut(s) | 648 |
| RsaNI | GTAC | 1 cut(s) | 647 |
| SaqAI | TTAA | 1 cut(s) | 208 |
| SchI | GAGTC | 4 cut(s) | 73, 148, 159, 611 |
| ScrFI | CCNGG | 1 cut(s) | 350 |
| SduI | GDGCHC | 1 cut(s) | 178 |
| SetI | ASST | 7 cut(s) | 16, 112, 303, 334, 466, 626, 661 |
| Sse9I | AATT | 3 cut(s) | 169, 410, 639 |
| SsiI | CCGC | 2 cut(s) | 29, 118 |
| StyD4I | CCNGG | 1 cut(s) | 348 |
| TaaI | ACNGT | 2 cut(s) | 401, 596 |
| TaiI | ACGT | 1 cut(s) | 303 |
| TaqI | TCGA | 4 cut(s) | 163, 259, 306, 600 |
| TasI | AATT | 3 cut(s) | 169, 410, 639 |
| Tru1I | TTAA | 1 cut(s) | 208 |
| Tru9I | TTAA | 1 cut(s) | 208 |
| TseFI | GTSAC | 1 cut(s) | 276 |
| Tsp45I | GTSAC | 1 cut(s) | 276 |
| TspDTI | ATGAA | 6 cut(s) | 86, 351, 487, 651, 702, 804 |
| TspGWI | ACGGA | 1 cut(s) | 408 |
| Tth111I | GACNNNGTC | 1 cut(s) | 342 |
| VspI | ATTAAT | 1 cut(s) | 208 |
| XapI | RAATTY | 1 cut(s) | 410 |
| XmiI | GTMKAC | 1 cut(s) | 297 |