Rmu_sc0031047.1_g000001

UDP-glucuronate 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031047.1
OG0015857
Physical Location & Seq
Forward (+)
33 .. 788
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031047.1_g000001.1.cds

Sequence Viewer

Length: 756 bp
atgcagaacccggggtcgtatgttcacagcaacattgctgggtttgtgaatcttctagaagtctgtaaatcggtgaatcctcagccggcgattgtgtgggcctcgtccagttcggtttatgggctcaattcgaaggtgccgttttcggagaaggacaggactgaccagccggcgagtctttatgctgctacaaagaaggctggagaggagatcgctcatacttataaccacatttacgggctttcgattaccgggttgaggtttttcactgtttacgggccgtgggggaggcctgacatggcttacttcttttttaccaaggatattttgaaagggaagccgattacgatctttgaagctcctggtcatggctctgtggccagagattttacctacattgatgatattgtgaagggttgtgtggcgtcattggatactgcgaagaagagtacagggagtggtgggaagaagaagggtcctgcgcagttgagggtgttcaatttggggaacacgtcgcctgtgccggtgagtaaccttgtgagcattttggagaagcatttgaaggttaaggcgaaaaggaaggtgttgccaatgccgaggaatggggatgtgaagtttacgcatgccaatataagcttagcacacaaggagctcaggtacgagcctagcacagatttgcagacggggctgaagaagtttgtgaagtggtacctcagttattatcaggggtctaagaagaggattagtacctggtga

Protein Analysis

251

Amino Acids

27.82

Weight (kDa)

9.78

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45310 AT4G12250
fragaria_vesca FvH4_5g00620
prunus_persica Prupe.5G079000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0201641
rosa_laevigata RLG00000003659
rosa_multiflora Rmu_sc0031046.1_g000001 Rmu_sc0031047.1_g000001
rosa_roxburghii Rroxscaffold_3G00255170
rosa_rugosa Rorug07G0065300
rosa_samantha Rh7AG192100 Rh7BG194300 Rh7CG203400 Rh7DG197400
rosa_wichuraiana Rw7G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
Acc16I TGCGCA 1 cut(s) 483
Acc65I GGTACC 1 cut(s) 708
AccB1I GGYRCC 2 cut(s) 136, 708
AcoI YGGCCR 1 cut(s) 378
AcuI CTGAAG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 4 cut(s) 451, 659, 710, 748
AfiI CCNNNNNNNGG 3 cut(s) 258, 368, 602
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 4 cut(s) 331, 356, 499, 562
AjiI CACGTC 1 cut(s) 513
AjnI CCWGG 2 cut(s) 361, 749
AluBI AGCT 3 cut(s) 359, 636, 652
AluI AGCT 3 cut(s) 359, 636, 652
Alw21I GWGCWC 1 cut(s) 654
Ama87I CYCGRG 1 cut(s) 10
AoxI GGCC 4 cut(s) 99, 278, 290, 378
ApeKI GCWGC 1 cut(s) 185
Asp718I GGTACC 1 cut(s) 708
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 3 cut(s) 99, 278, 476
AsuC2I CCSGG 3 cut(s) 11, 12, 253
AsuHPI GGTGA 2 cut(s) 85, 538
AsuII TTCGAA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 10
AvaII GGWCC 1 cut(s) 476
BaeI ACNNNNGTAYC 2 cut(s) 700, 733
BalI TGGCCA 1 cut(s) 380
BanI GGYRCC 2 cut(s) 136, 708
BanII GRGCYC 2 cut(s) 126, 654
Bbv12I GWGCWC 1 cut(s) 654
BbvCI CCTCAGC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 172
BceAI ACGGC 2 cut(s) 124, 265
BciT130I CCWGG 2 cut(s) 363, 751
BciVI GTATCC 1 cut(s) 427
BcnI CCSGG 3 cut(s) 11, 12, 253
BfaI CTAG 2 cut(s) 56, 666
BfuI GTATCC 1 cut(s) 427
BisI GCNGC 1 cut(s) 186
BlpI GCTNAGC 1 cut(s) 637
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 5 cut(s) 11, 12, 253, 363, 751
Bme18I GGWCC 1 cut(s) 476
BmeT110I CYCGRG 1 cut(s) 10
BmgBI CACGTC 1 cut(s) 513
BmgT120I GGNCC 3 cut(s) 99, 278, 476
BmiI GGNNCC 3 cut(s) 138, 477, 710
BmrFI CCNGG 5 cut(s) 11, 12, 253, 363, 751
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 2 cut(s) 81, 653
Bpu1102I GCTNAGC 1 cut(s) 637
Bpu14I TTCGAA 1 cut(s) 131
BpuMI CCSGG 3 cut(s) 11, 12, 253
BsaBI GATNNNNATC 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 425
BsaJI CCNNGG 5 cut(s) 10, 11, 281, 318, 596
BsaXI ACNNNNNCTCC 2 cut(s) 641, 671
Bsc4I CCNNNNNNNGG 3 cut(s) 258, 368, 602
Bse118I RCCGGY 3 cut(s) 85, 169, 523
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 347
BseBI CCWGG 2 cut(s) 363, 751
BseDI CCNNGG 5 cut(s) 10, 11, 281, 318, 596
BseGI GGATG 1 cut(s) 613
BseJI GATNNNNATC 1 cut(s) 347
BseLI CCNNNNNNNGG 3 cut(s) 258, 368, 602
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 95, 667, 727
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 172
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 4 cut(s) 101, 280, 292, 380
BshNI GGYRCC 2 cut(s) 136, 708
BsiHKAI GWGCWC 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 10
BsiSI CCGG 5 cut(s) 11, 86, 170, 252, 524
BslI CCNNNNNNNGG 3 cut(s) 258, 368, 602
BsnI GGCC 4 cut(s) 101, 280, 292, 380
BsoBI CYCGRG 1 cut(s) 10
Bsp119I TTCGAA 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 126, 654
Bsp143I GATC 2 cut(s) 210, 348
Bsp1720I GCTNAGC 1 cut(s) 637
BspANI GGCC 4 cut(s) 101, 280, 292, 380
BspCNI CTCAG 3 cut(s) 94, 666, 726
BspLI GGNNCC 3 cut(s) 138, 477, 710
BspT104I TTCGAA 1 cut(s) 131
BspT107I GGYRCC 2 cut(s) 136, 708
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 85, 169, 523
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 3 cut(s) 85, 169, 523
BssECI CCNNGG 5 cut(s) 10, 11, 281, 318, 596
BssMI GATC 2 cut(s) 210, 348
BssNI GRCGYC 1 cut(s) 425
BssT1I CCWWGG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 363, 751
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 2 cut(s) 440, 731
BstACI GRCGYC 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 87, 171, 624
BstDEI CTNAG 5 cut(s) 81, 637, 653, 713, 732
BstDSI CCRYGG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 613
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 2 cut(s) 213, 351
BstMBI GATC 2 cut(s) 210, 348
BstMWI GCNNNNNNNGC 1 cut(s) 685
BstNI CCWGG 2 cut(s) 363, 751
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 5 cut(s) 9, 10, 251, 361, 749
BstV1I GCAGC 1 cut(s) 172
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 4 cut(s) 101, 280, 292, 380
BtgI CCRYGG 1 cut(s) 281
BtrI CACGTC 1 cut(s) 513
BtsCI GGATG 1 cut(s) 613
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 3 cut(s) 87, 171, 624
CfoI GCGC 1 cut(s) 484
Cfr10I RCCGGY 3 cut(s) 85, 169, 523
Cfr13I GGNCC 3 cut(s) 99, 278, 476
Cfr9I CCCGGG 1 cut(s) 10
CseI GACGC 1 cut(s) 414
CsiI ACCWGGT 1 cut(s) 749
Csp6I GTAC 4 cut(s) 450, 658, 709, 747
CviAII CATG 3 cut(s) 298, 368, 623
CviQI GTAC 4 cut(s) 450, 658, 709, 747
DdeI CTNAG 5 cut(s) 81, 637, 653, 713, 732
DpnI GATC 2 cut(s) 212, 350
DpnII GATC 2 cut(s) 210, 348
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 2 cut(s) 440, 731
EarI CTCTTC 2 cut(s) 440, 731
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 1 cut(s) 318
Eco147I AGGCCT 1 cut(s) 292
Eco24I GRGCYC 2 cut(s) 126, 654
Eco47I GGWCC 1 cut(s) 476
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 710
Eco88I CYCGRG 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 361, 749
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 2 cut(s) 126, 654
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 3 cut(s) 301, 371, 626
FaiI YATR 9 cut(s) 21, 120, 183, 219, 225, 299, 369, 624, 632
FatI CATG 3 cut(s) 297, 367, 622
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 620
FriOI GRGCYC 2 cut(s) 126, 654
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 2 cut(s) 56, 666
FspI TGCGCA 1 cut(s) 483
GlaI GCGC 1 cut(s) 483
GluI GCNGC 1 cut(s) 186
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 4 cut(s) 101, 280, 292, 380
HapII CCGG 5 cut(s) 11, 86, 170, 252, 524
HgaI GACGC 1 cut(s) 414
HhaI GCGC 1 cut(s) 484
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 3 cut(s) 301, 371, 626
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 3 cut(s) 49, 76, 175
HpaII CCGG 5 cut(s) 11, 86, 170, 252, 524
HphI GGTGA 2 cut(s) 85, 538
Hpy166II GTNNAC 3 cut(s) 25, 274, 618
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 3 cut(s) 25, 274, 618
Hpy99I CGWCG 1 cut(s) 517
HpyAV CCTTC 7 cut(s) 127, 145, 190, 406, 466, 556, 574
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 2 cut(s) 4, 679
HpyF10VI GCNNNNNNNGC 1 cut(s) 685
HpyF3I CTNAG 5 cut(s) 81, 637, 653, 713, 732
HpySE526I ACGT 1 cut(s) 512
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 3 cut(s) 301, 371, 626
HspAI GCGC 1 cut(s) 482
KpnI GGTACC 1 cut(s) 712
KroI GCCGGC 2 cut(s) 85, 169
KroNI GCCGGC 2 cut(s) 87, 171
Kzo9I GATC 2 cut(s) 210, 348
LmnI GCTCC 2 cut(s) 364, 649
Lsp1109I GCAGC 1 cut(s) 172
MabI ACCWGGT 1 cut(s) 749
MaeI CTAG 2 cut(s) 56, 666
MaeII ACGT 1 cut(s) 512
MaeIII GTNAC 1 cut(s) 530
MalI GATC 2 cut(s) 212, 350
MboI GATC 2 cut(s) 210, 348
MboII GAAGA 7 cut(s) 44, 454, 457, 478, 481, 703, 748
MhlI GDGCHC 2 cut(s) 126, 654
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 2 cut(s) 127, 499
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 1 cut(s) 184
MnlI CCTC 9 cut(s) 90, 112, 199, 252, 282, 483, 591, 722, 732
Mox20I TGGCCA 1 cut(s) 380
MroNI GCCGGC 2 cut(s) 85, 169
MscI TGGCCA 1 cut(s) 380
MseI TTAA 1 cut(s) 567
Msp20I TGGCCA 1 cut(s) 380
MspI CCGG 5 cut(s) 11, 86, 170, 252, 524
MspR9I CCNGG 5 cut(s) 11, 12, 253, 363, 751
MvaI CCWGG 2 cut(s) 363, 751
MwoI GCNNNNNNNGC 1 cut(s) 685
NaeI GCCGGC 2 cut(s) 87, 171
NciI CCSGG 3 cut(s) 11, 12, 253
NdeII GATC 2 cut(s) 210, 348
NgoMIV GCCGGC 2 cut(s) 85, 169
NlaIII CATG 3 cut(s) 301, 371, 626
NlaIV GGNNCC 3 cut(s) 138, 477, 710
NmeAIII GCCGAG 1 cut(s) 621
NsbI TGCGCA 1 cut(s) 483
NspI RCATGY 1 cut(s) 626
NspV TTCGAA 1 cut(s) 131
PaeI GCATGC 1 cut(s) 626
PceI AGGCCT 1 cut(s) 292
PcsI WCGNNNNNNNCGW 1 cut(s) 137
PdiI GCCGGC 2 cut(s) 87, 171
PfeI GAWTC 2 cut(s) 49, 76
PkrI GCNGC 1 cut(s) 187
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PpuMI RGGWCCY 1 cut(s) 476
PsiI TTATAA 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 654
Psp5II RGGWCCY 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 361, 749
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 2 cut(s) 361, 749
PspN4I GGNNCC 3 cut(s) 138, 477, 710
PspPI GGNCC 3 cut(s) 99, 278, 476
PspPPI RGGWCCY 1 cut(s) 476
RsaI GTAC 4 cut(s) 451, 659, 710, 748
RsaNI GTAC 4 cut(s) 450, 658, 709, 747
SacI GAGCTC 1 cut(s) 654
SaqAI TTAA 1 cut(s) 567
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 210, 348
Sau96I GGNCC 3 cut(s) 99, 278, 476
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 5 cut(s) 11, 12, 253, 363, 751
SduI GDGCHC 2 cut(s) 126, 654
SexAI ACCWGGT 1 cut(s) 749
SfuI TTCGAA 1 cut(s) 131
SinI GGWCC 1 cut(s) 476
SmaI CCCGGG 1 cut(s) 12
SphI GCATGC 1 cut(s) 626
Sse9I AATT 2 cut(s) 127, 499
SseBI AGGCCT 1 cut(s) 292
SspMI CTAG 2 cut(s) 56, 666
SstI GAGCTC 1 cut(s) 654
StuI AGGCCT 1 cut(s) 292
StyD4I CCNGG 5 cut(s) 9, 10, 251, 361, 749
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 515
TaqI TCGA 2 cut(s) 131, 245
TasI AATT 2 cut(s) 127, 499
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 2 cut(s) 49, 76
Tru1I TTAA 1 cut(s) 567
Tru9I TTAA 1 cut(s) 567
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 185
TspMI CCCGGG 1 cut(s) 10
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 476
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 1 cut(s) 626
XmaI CCCGGG 1 cut(s) 10
XspI CTAG 2 cut(s) 56, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.