Rh7AG192100

UDP-glucuronate 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0015857
Physical Location & Seq
Reverse (-)
17186443 .. 17187778
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG192100.1

Sequence Viewer

Length: 978 bp
ATGGCCCTGAAGCGCCGCGGCGACGGCGTCTTGGGAATCGATAACTTCAACCACTACTACGACCCTCGCCTGAAGCGCGATCGCCAGAAGCTTCTGGAAAGGAACGGCGTCTTCGTCGTGGAAGGGGACATAAACGACGCGTCGTTGCTGAGGAAGCTGTTCGACGTCGTGCCGTTTACGCACGTAATGCACCTGGCGGCTCAGGCCGGGGTTCGGTATGCAATGCAGAACCCGGGGTCGTATGTTCACAGCAACATTGCTGGGTTTGTGAATCTTCTAGAAGTGTGTAAATCGGTGAATCCGCAGCCGGCGATTGTGTGGGCCTCGTCGAGTTCGGTTTATGGGCTCAATTCGAAGGTGCCGTTTTCGGAGAAGGACAGGACTGACCAGCCCGCGAGTCTTTATGCTGCTACAAAGAAGGCTGGAGAGGAGATTGCTCATACTTATAACCACATTTACGGGCTTTCGATTACCGGGTTGAGGTTTTTCACTGTTTACGGGCCGTGGGGGAGGCCTGACATGGCTTACTTCTTTTTTACTAAGGACATTTTGAAAGGGAAGCCGATTACGATCTTTGAAGCTCCTGGTCATGGCTCTGTGGCCAGAGATTTTACCTACATTGATGATATTGTGAAGGGTTGTGTGGCGTCATTGGATACAGCGAAGAAGAGTACAGGGAGTGGTGGGAAGAAGAAGGGTCCTGCGCAGTTGAGGGTGTTCAATTTGGGGAACACGTCGCCTGTGCCGGTGAGTAACCTTGTGAGCATTTTGGAGAAGCATTTGAAGGTTAAGGCGAAAAGGAAGGTGTTGCCAATGCCGAGGAATGGGGATGTGAAGTTTACGCATGCCAATATAAGCTTAGCACACAAGGAGCTCCGGTACAAGCCTAGCACAGATTTGCAGACGGGGCTGAAGAAGTTTGTGAAGTGGTACCTCAGTTATTATCAGGGGTCTAAGAAGAGGATTAGTGCCTGGTGA

Protein Analysis

325

Amino Acids

36.27

Weight (kDa)

9.85

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 3 - 222 1.6e-43 NAD dependent epimerase/dehydratase family
GDP_Man_Dehyd PF16363 5 - 306 3e-41 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 24 - 270 1e-10 3-beta hydroxysteroid dehydrogenase/isomerase family
Polysacc_synt_2 PF02719 37 - 193 1.2e-06 Polysaccharide biosynthesis protein
RmlD_sub_bind PF04321 39 - 167 2.1e-09 RmlD substrate binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45310 AT4G12250
fragaria_vesca FvH4_5g00620
prunus_persica Prupe.5G079000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0201641
rosa_laevigata RLG00000003659
rosa_multiflora Rmu_sc0031046.1_g000001 Rmu_sc0031047.1_g000001
rosa_roxburghii Rroxscaffold_3G00255170
rosa_rugosa Rorug07G0065300
rosa_samantha Rh7AG192100 Rh7BG194300 Rh7CG203400 Rh7DG197400
rosa_wichuraiana Rw7G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AatII GACGTC 1 cut(s) 168
Acc16I TGCGCA 1 cut(s) 705
Acc65I GGTACC 1 cut(s) 930
AccB1I GGYRCC 2 cut(s) 358, 930
AccII CGCG 4 cut(s) 18, 78, 140, 395
AciI CCGC 5 cut(s) 16, 18, 197, 302, 393
AcoI YGGCCR 1 cut(s) 600
AcuI CTGAAG 3 cut(s) 29, 92, 932
AcyI GRCGYC 4 cut(s) 27, 108, 165, 647
AfaI GTAC 3 cut(s) 673, 881, 932
AfiI CCNNNNNNNGG 4 cut(s) 213, 480, 590, 824
AflIII ACRYGT 2 cut(s) 138, 732
AgsI TTSAA 5 cut(s) 49, 553, 578, 721, 784
AjiI CACGTC 1 cut(s) 735
AjnI CCWGG 3 cut(s) 192, 583, 971
AluBI AGCT 5 cut(s) 91, 157, 581, 858, 874
AluI AGCT 5 cut(s) 91, 157, 581, 858, 874
Alw21I GWGCWC 1 cut(s) 876
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 6 cut(s) 3, 204, 321, 500, 512, 600
ApeKI GCWGC 2 cut(s) 304, 407
AsiSI GCGATCGC 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 158
Asp718I GGTACC 1 cut(s) 930
AspLEI GCGC 3 cut(s) 15, 78, 706
AspS9I GGNCC 4 cut(s) 4, 321, 500, 698
AsuC2I CCSGG 4 cut(s) 208, 233, 234, 475
AsuHPI GGTGA 2 cut(s) 307, 760
AsuII TTCGAA 1 cut(s) 353
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 1 cut(s) 698
BaeI ACNNNNGTAYC 2 cut(s) 922, 955
BalI TGGCCA 1 cut(s) 602
BanI GGYRCC 2 cut(s) 358, 930
BanII GRGCYC 2 cut(s) 348, 876
BbsI GAAGAC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 876
BbvCI CCTCAGC 1 cut(s) 149
BbvI GCAGC 2 cut(s) 316, 394
BceAI ACGGC 5 cut(s) 40, 121, 157, 346, 487
BciT130I CCWGG 3 cut(s) 194, 585, 973
BciVI GTATCC 1 cut(s) 649
BcnI CCSGG 4 cut(s) 208, 233, 234, 475
BfaI CTAG 2 cut(s) 278, 888
BfoI RGCGCY 1 cut(s) 16
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 5 cut(s) 16, 19, 198, 305, 408
BlpI GCTNAGC 1 cut(s) 859
BlsI GCNGC 5 cut(s) 17, 20, 199, 306, 409
Bme1390I CCNGG 7 cut(s) 194, 208, 233, 234, 475, 585, 973
Bme18I GGWCC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 232
BmgBI CACGTC 1 cut(s) 735
BmgT120I GGNCC 4 cut(s) 4, 321, 500, 698
BmiI GGNNCC 3 cut(s) 360, 699, 932
BmrFI CCNGG 7 cut(s) 194, 208, 233, 234, 475, 585, 973
BpiI GAAGAC 1 cut(s) 103
BpmI CTGGAG 1 cut(s) 444
Bpu10I CCTNAGC 2 cut(s) 149, 201
Bpu1102I GCTNAGC 1 cut(s) 859
Bpu14I TTCGAA 1 cut(s) 353
BpuMI CCSGG 4 cut(s) 208, 233, 234, 475
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 569
BsaHI GRCGYC 4 cut(s) 27, 108, 165, 647
BsaJI CCNNGG 6 cut(s) 16, 207, 232, 233, 503, 818
BsaWI WCCGGW 1 cut(s) 876
BsaXI ACNNNNNCTCC 2 cut(s) 863, 893
Bsc4I CCNNNNNNNGG 4 cut(s) 213, 480, 590, 824
Bse118I RCCGGY 2 cut(s) 307, 745
Bse3DI GCAATG 2 cut(s) 228, 255
Bse8I GATNNNNATC 1 cut(s) 569
BseBI CCWGG 3 cut(s) 194, 585, 973
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 6 cut(s) 16, 207, 232, 233, 503, 818
BseGI GGATG 1 cut(s) 835
BseJI GATNNNNATC 1 cut(s) 569
BseLI CCNNNNNNNGG 4 cut(s) 213, 480, 590, 824
BseMI GCAATG 2 cut(s) 228, 255
BseMII CTCAG 3 cut(s) 140, 215, 949
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 2 cut(s) 316, 394
BseYI CCCAGC 1 cut(s) 260
Bsh1236I CGCG 4 cut(s) 18, 78, 140, 395
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 6 cut(s) 5, 206, 323, 502, 514, 602
BshNI GGYRCC 2 cut(s) 358, 930
BshVI ATCGAT 1 cut(s) 39
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 876
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 6 cut(s) 207, 233, 308, 474, 746, 877
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 4 cut(s) 213, 480, 590, 824
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 6 cut(s) 5, 206, 323, 502, 514, 602
BsoBI CYCGRG 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 353
Bsp1286I GDGCHC 2 cut(s) 348, 876
Bsp143I GATC 2 cut(s) 79, 570
Bsp1720I GCTNAGC 1 cut(s) 859
BspACI CCGC 5 cut(s) 16, 18, 197, 302, 393
BspANI GGCC 6 cut(s) 5, 206, 323, 502, 514, 602
BspCNI CTCAG 3 cut(s) 141, 214, 948
BspDI ATCGAT 1 cut(s) 39
BspFNI CGCG 4 cut(s) 18, 78, 140, 395
BspLI GGNNCC 3 cut(s) 360, 699, 932
BspT104I TTCGAA 1 cut(s) 353
BspT107I GGYRCC 2 cut(s) 358, 930
BsrDI GCAATG 2 cut(s) 228, 255
BsrFI RCCGGY 2 cut(s) 307, 745
BssAI RCCGGY 2 cut(s) 307, 745
BssECI CCNNGG 6 cut(s) 16, 207, 232, 233, 503, 818
BssMI GATC 2 cut(s) 79, 570
BssNI GRCGYC 4 cut(s) 27, 108, 165, 647
Bst2UI CCWGG 3 cut(s) 194, 585, 973
Bst4CI ACNGT 1 cut(s) 493
Bst6I CTCTTC 2 cut(s) 662, 953
BstACI GRCGYC 4 cut(s) 27, 108, 165, 647
BstAPI GCANNNNNTGC 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 184
BstBI TTCGAA 1 cut(s) 353
BstC8I GCNNGC 3 cut(s) 309, 393, 846
BstDEI CTNAG 6 cut(s) 149, 201, 540, 859, 935, 954
BstDSI CCRYGG 2 cut(s) 16, 503
BstF5I GGATG 1 cut(s) 835
BstFNI CGCG 4 cut(s) 18, 78, 140, 395
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 3 cut(s) 15, 78, 706
BstKTI GATC 2 cut(s) 82, 573
BstMBI GATC 2 cut(s) 79, 570
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 7 cut(s) 24, 75, 154, 178, 187, 203, 907
BstNI CCWGG 3 cut(s) 194, 585, 973
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 7 cut(s) 192, 206, 231, 232, 473, 583, 971
BstUI CGCG 4 cut(s) 18, 78, 140, 395
BstV1I GCAGC 2 cut(s) 316, 394
BstV2I GAAGAC 1 cut(s) 103
Bsu15I ATCGAT 1 cut(s) 39
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 6 cut(s) 5, 206, 323, 502, 514, 602
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 2 cut(s) 16, 503
BtrI CACGTC 1 cut(s) 735
BtsCI GGATG 1 cut(s) 835
BtsIMutI CAGTG 1 cut(s) 489
Cac8I GCNNGC 3 cut(s) 309, 393, 846
CfoI GCGC 3 cut(s) 15, 78, 706
Cfr10I RCCGGY 2 cut(s) 307, 745
Cfr13I GGNCC 4 cut(s) 4, 321, 500, 698
Cfr42I CCGCGG 1 cut(s) 19
Cfr9I CCCGGG 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 39
CseI GACGC 5 cut(s) 16, 97, 129, 146, 636
Csp6I GTAC 3 cut(s) 672, 880, 931
CviAII CATG 3 cut(s) 520, 590, 845
CviQI GTAC 3 cut(s) 672, 880, 931
DdeI CTNAG 6 cut(s) 149, 201, 540, 859, 935, 954
DpnI GATC 2 cut(s) 81, 572
DpnII GATC 2 cut(s) 79, 570
EaeI YGGCCR 1 cut(s) 600
Eam1104I CTCTTC 2 cut(s) 662, 953
EarI CTCTTC 2 cut(s) 662, 953
Ecl136II GAGCTC 1 cut(s) 874
Eco147I AGGCCT 1 cut(s) 514
Eco24I GRGCYC 2 cut(s) 348, 876
Eco47I GGWCC 1 cut(s) 698
Eco53kI GAGCTC 1 cut(s) 874
Eco57I CTGAAG 3 cut(s) 29, 92, 932
Eco88I CYCGRG 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 874
EcoO109I RGGNCCY 1 cut(s) 698
EcoRII CCWGG 3 cut(s) 192, 583, 971
EcoT38I GRGCYC 2 cut(s) 348, 876
FaeI CATG 3 cut(s) 523, 593, 848
FaqI GGGAC 1 cut(s) 140
FatI CATG 3 cut(s) 519, 589, 844
FauI CCCGC 1 cut(s) 400
Fnu4HI GCNGC 5 cut(s) 16, 19, 198, 305, 408
FokI GGATG 1 cut(s) 842
FriOI GRGCYC 2 cut(s) 348, 876
Fsp4HI GCNGC 5 cut(s) 16, 19, 198, 305, 408
FspBI CTAG 2 cut(s) 278, 888
FspI TGCGCA 1 cut(s) 705
GlaI GCGC 3 cut(s) 14, 77, 705
GluI GCNGC 5 cut(s) 16, 19, 198, 305, 408
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 6 cut(s) 5, 206, 323, 502, 514, 602
HapII CCGG 6 cut(s) 207, 233, 308, 474, 746, 877
HgaI GACGC 5 cut(s) 16, 97, 129, 146, 636
HhaI GCGC 3 cut(s) 15, 78, 706
Hin1I GRCGYC 4 cut(s) 27, 108, 165, 647
Hin1II CATG 3 cut(s) 523, 593, 848
Hin6I GCGC 3 cut(s) 13, 76, 704
HinP1I GCGC 3 cut(s) 13, 76, 704
HindIII AAGCTT 2 cut(s) 89, 856
HinfI GANTC 4 cut(s) 36, 271, 298, 397
HpaII CCGG 6 cut(s) 207, 233, 308, 474, 746, 877
HphI GGTGA 2 cut(s) 307, 760
Hpy166II GTNNAC 4 cut(s) 177, 247, 496, 840
Hpy188I TCNGA 1 cut(s) 370
Hpy188III TCNNGA 2 cut(s) 95, 278
Hpy8I GTNNAC 4 cut(s) 177, 247, 496, 840
Hpy99I CGWCG 8 cut(s) 26, 119, 140, 145, 167, 170, 331, 739
HpyAV CCTTC 8 cut(s) 116, 349, 367, 412, 628, 688, 778, 796
HpyCH4III ACNGT 1 cut(s) 493
HpyCH4IV ACGT 3 cut(s) 165, 183, 734
HpyCH4V TGCA 4 cut(s) 190, 221, 226, 901
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 75, 154, 178, 187, 203, 907
HpyF3I CTNAG 6 cut(s) 149, 201, 540, 859, 935, 954
HpySE526I ACGT 3 cut(s) 165, 183, 734
Hsp92I GRCGYC 4 cut(s) 27, 108, 165, 647
Hsp92II CATG 3 cut(s) 523, 593, 848
HspAI GCGC 3 cut(s) 13, 76, 704
KpnI GGTACC 1 cut(s) 934
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
KspI CCGCGG 1 cut(s) 19
Kzo9I GATC 2 cut(s) 79, 570
LmnI GCTCC 3 cut(s) 586, 871, 879
Lsp1109I GCAGC 2 cut(s) 316, 394
MaeI CTAG 2 cut(s) 278, 888
MaeII ACGT 3 cut(s) 165, 183, 734
MaeIII GTNAC 1 cut(s) 752
MalI GATC 2 cut(s) 81, 572
MboI GATC 2 cut(s) 79, 570
MboII GAAGA 8 cut(s) 103, 266, 676, 679, 700, 703, 925, 970
MhlI GDGCHC 2 cut(s) 348, 876
MlsI TGGCCA 1 cut(s) 602
MluCI AATT 2 cut(s) 349, 721
MluI ACGCGT 1 cut(s) 138
MluNI TGGCCA 1 cut(s) 602
MlyI GAGTC 1 cut(s) 406
Mox20I TGGCCA 1 cut(s) 602
MroNI GCCGGC 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 602
MseI TTAA 1 cut(s) 789
Msp20I TGGCCA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 18
MspI CCGG 6 cut(s) 207, 233, 308, 474, 746, 877
MspR9I CCNGG 7 cut(s) 194, 208, 233, 234, 475, 585, 973
MvaI CCWGG 3 cut(s) 194, 585, 973
MvnI CGCG 4 cut(s) 18, 78, 140, 395
MwoI GCNNNNNNNGC 7 cut(s) 24, 75, 154, 178, 187, 203, 907
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 4 cut(s) 208, 233, 234, 475
NdeII GATC 2 cut(s) 79, 570
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 3 cut(s) 523, 593, 848
NlaIV GGNNCC 3 cut(s) 360, 699, 932
NmeAIII GCCGAG 1 cut(s) 843
NsbI TGCGCA 1 cut(s) 705
NspI RCATGY 1 cut(s) 848
NspV TTCGAA 1 cut(s) 353
PaeI GCATGC 1 cut(s) 848
PceI AGGCCT 1 cut(s) 514
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 359
PdiI GCCGGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 3 cut(s) 36, 271, 298
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 5 cut(s) 17, 20, 199, 306, 409
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
Ppu21I YACGTR 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 698
PsiI TTATAA 1 cut(s) 447
Psp124BI GAGCTC 1 cut(s) 876
Psp5II RGGWCCY 1 cut(s) 698
Psp6I CCWGG 3 cut(s) 192, 583, 971
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 3 cut(s) 192, 583, 971
PspN4I GGNNCC 3 cut(s) 360, 699, 932
PspPI GGNCC 4 cut(s) 4, 321, 500, 698
PspPPI RGGWCCY 1 cut(s) 698
PsyI GACNNNGTC 1 cut(s) 26
PvuI CGATCG 1 cut(s) 82
RgaI GCGATCGC 1 cut(s) 82
RsaI GTAC 3 cut(s) 673, 881, 932
RsaNI GTAC 3 cut(s) 672, 880, 931
SacI GAGCTC 1 cut(s) 876
SacII CCGCGG 1 cut(s) 19
SaqAI TTAA 1 cut(s) 789
SatI GCNGC 5 cut(s) 16, 19, 198, 305, 408
Sau3AI GATC 2 cut(s) 79, 570
Sau96I GGNCC 4 cut(s) 4, 321, 500, 698
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 7 cut(s) 194, 208, 233, 234, 475, 585, 973
SduI GDGCHC 2 cut(s) 348, 876
SfaAI GCGATCGC 1 cut(s) 82
Sfr303I CCGCGG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 353
SgfI GCGATCGC 1 cut(s) 82
SgrBI CCGCGG 1 cut(s) 19
SinI GGWCC 1 cut(s) 698
SmaI CCCGGG 1 cut(s) 234
SphI GCATGC 1 cut(s) 848
Sse9I AATT 2 cut(s) 349, 721
SseBI AGGCCT 1 cut(s) 514
SsiI CCGC 5 cut(s) 16, 18, 197, 302, 393
SspMI CTAG 2 cut(s) 278, 888
SstI GAGCTC 1 cut(s) 876
StuI AGGCCT 1 cut(s) 514
StyD4I CCNGG 7 cut(s) 192, 206, 231, 232, 473, 583, 971
TaaI ACNGT 1 cut(s) 493
TaiI ACGT 3 cut(s) 168, 186, 737
TaqI TCGA 5 cut(s) 39, 162, 329, 353, 467
TasI AATT 2 cut(s) 349, 721
TatI WGTACW 1 cut(s) 671
TauI GCSGC 3 cut(s) 18, 21, 200
TfiI GAWTC 3 cut(s) 36, 271, 298
Tru1I TTAA 1 cut(s) 789
Tru9I TTAA 1 cut(s) 789
TscAI CASTG 1 cut(s) 496
TseI GCWGC 2 cut(s) 304, 407
TspMI CCCGGG 1 cut(s) 232
TspRI CASTG 1 cut(s) 496
Tth111I GACNNNGTC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 698
XbaI TCTAGA 1 cut(s) 277
XceI RCATGY 1 cut(s) 848
XmaI CCCGGG 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 2 cut(s) 278, 888
ZraI GACGTC 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.