Rh7DG197400

UDP-glucuronate 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015857
Physical Location & Seq
Reverse (-)
18528369 .. 18531963
3595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG197400.1

Sequence Viewer

Length: 1311 bp
ATGTCACAGCTGAAGCCAATTTCACACCTTGATGACATACCCTCGACGCCCGGCAAGTTCAAGCTCGAGAAATCCCAGCCCTACATTCAACGCCTCAGGTTCCACGCGTCGCTCTCCAAGCTCACCCTCTGGTCCTCCTTCTTCCTCGTCTTCATTCTCTTCTACTACGTCCTCTCCTCGCCCTCGCCGTCTCTCCCTTCCCGGCGCTCCCTCAACGACTCCTGGGGCGGCCCCGATTGGGAGAAACGCGTCACCCGCTCCGCCAAGACCTCGGCCCATGGGCTCACCGTCCTCGTCACCGGCGCCGCCGGCTTCGTCGGGACCCACGTCTCCATGGCCCTGAAGCGCCGCGGCGACGGCGTCTTGGGAATCGATAACTTCAACCACTACTACGACCCTCGCCTGAAGCGCGATCGCCAGAAGCTTCTGGAAAGGAACGGCGTCTTCGTCGTGGAAGGGGACATAAACGACGCGTCGTTGCTGAGGAAGCTGTTCGACGTCGTGCCGTTTACTCACGTAATGCACCTGGCGGCTCAGGCCGGGGTTCGGTACGCAATGCAGAACCCGGGGTCGTATGTTCACAGCAACATTGCTGGGTTTGTGAATCTTCTAGAAGTCTGTAAATCGGTGAATCCGCAGCCGGCGATTGTGTGGGCCTCGTCCAGTTCGGTTTATGGGCTCAATTCGAAGGTGCCCTTTTCGGAGAAGGACAGGACTGACCAGCCGGCGAGTCTTTATGCTGCTACAAAGAAGGCTGGAGAGGAGATCGCTCATACTTATAACCACATTTACGGGCTTTCGATTACCGGGTTGAGGTTTTTCACTGTTTACGGGCCGTGGGGGAGGCCTGACATGGCTTACTTCTTTTTTACTAAGGATATTTTGAAAGGGAAGCCGATTACGATCTTTGAAGCTCCTGGTCATGGCTCTGTGGCCAGAGATTTTACCTACATTGATGATATTGTGAAGGGTTGTGTGGCGTCATTGGATACAGCGAAGAAGAGTACAGGGAGTGGTGGGAAGAAGAAGGGTCCTGCGCAGTTGAGGGTGTTCAATTTGGGGAACACGTCGCCTGTGCCGGTGAGTAACCTTGTGAGCATTTTGGAGAAGCATTTGAAGGTTAAGGCGAAAAGGAAGGTGTTGCCAATGCCGAGGAATGGGGATGTGAAGTTTACGCATGCCAATATAAGCTTAGCACACAAGGAGCTCAGGTACGAGCCTAGCACAGATTTGCAGACGGGGCTGAAGAAGTTTGTGAAGTGGTACCTCAGTTATTATCAGGGGTCTAAGAAGAGGATTAGTACCTGGTGA

Protein Analysis

436

Amino Acids

48.65

Weight (kDa)

9.89

Isoelectric Point (pI)

41.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RmlD_sub_bind PF04321 96 - 278 2.2e-13 RmlD substrate binding domain
Epimerase PF01370 97 - 333 5.8e-52 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 97 - 303 8.8e-09 Polysaccharide biosynthesis protein
GDP_Man_Dehyd PF16363 98 - 417 4.5e-48 GDP-mannose 4,6 dehydratase
3Beta_HSD PF01073 98 - 380 1.1e-15 3-beta hydroxysteroid dehydrogenase/isomerase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45310 AT4G12250
fragaria_vesca FvH4_5g00620
prunus_persica Prupe.5G079000_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0201641
rosa_laevigata RLG00000003659
rosa_multiflora Rmu_sc0031046.1_g000001 Rmu_sc0031047.1_g000001
rosa_roxburghii Rroxscaffold_3G00255170
rosa_rugosa Rorug07G0065300
rosa_samantha Rh7AG192100 Rh7BG194300 Rh7CG203400 Rh7DG197400
rosa_wichuraiana Rw7G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AatII GACGTC 1 cut(s) 501
Acc16I TGCGCA 1 cut(s) 1038
Acc65I GGTACC 1 cut(s) 1263
AccB1I GGYRCC 3 cut(s) 302, 691, 1263
AccBSI CCGCTC 1 cut(s) 258
AccII CGCG 5 cut(s) 107, 249, 351, 411, 473
AciI CCGC 8 cut(s) 228, 256, 261, 306, 349, 351, 530, 635
AcoI YGGCCR 1 cut(s) 933
AcuI CTGAAG 4 cut(s) 32, 362, 425, 1265
AcyI GRCGYC 6 cut(s) 47, 303, 360, 441, 498, 980
AfaI GTAC 5 cut(s) 551, 1006, 1214, 1265, 1303
AfiI CCNNNNNNNGG 5 cut(s) 238, 546, 813, 923, 1157
AflIII ACRYGT 4 cut(s) 105, 247, 471, 1065
AgsI TTSAA 7 cut(s) 61, 89, 382, 886, 911, 1054, 1117
AjiI CACGTC 2 cut(s) 328, 1068
AjnI CCWGG 4 cut(s) 221, 525, 916, 1304
AluBI AGCT 8 cut(s) 10, 64, 121, 424, 490, 914, 1191, 1207
AluI AGCT 8 cut(s) 10, 64, 121, 424, 490, 914, 1191, 1207
Alw21I GWGCWC 1 cut(s) 1209
Alw26I GTCTC 2 cut(s) 195, 334
Ama87I CYCGRG 2 cut(s) 65, 565
AoxI GGCC 8 cut(s) 229, 273, 336, 537, 654, 833, 845, 933
ApeKI GCWGC 2 cut(s) 637, 740
AsiSI GCGATCGC 1 cut(s) 415
Asp700I GAANNNNTTC 1 cut(s) 491
Asp718I GGTACC 1 cut(s) 1263
AspLEI GCGC 5 cut(s) 207, 305, 348, 411, 1039
AspS9I GGNCC 8 cut(s) 132, 230, 274, 321, 337, 654, 833, 1031
AsuC2I CCSGG 6 cut(s) 51, 202, 541, 566, 567, 808
AsuHPI GGTGA 6 cut(s) 115, 244, 277, 289, 640, 1093
AsuII TTCGAA 1 cut(s) 686
AvaI CYCGRG 2 cut(s) 65, 565
AvaII GGWCC 3 cut(s) 132, 321, 1031
AxyI CCTNAGG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 696
BaeI ACNNNNGTAYC 2 cut(s) 1255, 1288
BalI TGGCCA 1 cut(s) 935
BanI GGYRCC 3 cut(s) 302, 691, 1263
BanII GRGCYC 3 cut(s) 285, 681, 1209
BbsI GAAGAC 2 cut(s) 142, 436
Bbv12I GWGCWC 1 cut(s) 1209
BbvCI CCTCAGC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 649, 727
BceAI ACGGC 5 cut(s) 172, 373, 454, 490, 820
BciT130I CCWGG 4 cut(s) 223, 527, 918, 1306
BciVI GTATCC 1 cut(s) 982
BcnI CCSGG 6 cut(s) 51, 202, 541, 566, 567, 808
BcoDI GTCTC 2 cut(s) 195, 334
BfaI CTAG 2 cut(s) 611, 1221
BfoI RGCGCY 3 cut(s) 208, 306, 349
BfuI GTATCC 1 cut(s) 982
BisI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
BlpI GCTNAGC 1 cut(s) 1192
BlsI GCNGC 7 cut(s) 230, 307, 350, 353, 532, 639, 742
Bme18I GGWCC 3 cut(s) 132, 321, 1031
BmeT110I CYCGRG 2 cut(s) 65, 565
BmgBI CACGTC 2 cut(s) 328, 1068
BmgT120I GGNCC 8 cut(s) 132, 230, 274, 321, 337, 654, 833, 1031
BmiI GGNNCC 8 cut(s) 101, 232, 304, 322, 323, 693, 1032, 1265
BoxI GACNNNNGTC 1 cut(s) 326
BpiI GAAGAC 2 cut(s) 142, 436
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 3 cut(s) 482, 534, 1208
Bpu1102I GCTNAGC 1 cut(s) 1192
Bpu14I TTCGAA 1 cut(s) 686
BpuMI CCSGG 6 cut(s) 51, 202, 541, 566, 567, 808
Bsa29I ATCGAT 1 cut(s) 372
BsaAI YACGTR 1 cut(s) 517
BsaBI GATNNNNATC 1 cut(s) 902
BsaHI GRCGYC 6 cut(s) 47, 303, 360, 441, 498, 980
BsaXI ACNNNNNCTCC 4 cut(s) 158, 188, 1196, 1226
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 546, 813, 923, 1157
Bse118I RCCGGY 5 cut(s) 299, 308, 640, 724, 1078
Bse1I ACTGG 1 cut(s) 663
Bse21I CCTNAGG 1 cut(s) 95
Bse3DI GCAATG 2 cut(s) 561, 588
Bse8I GATNNNNATC 1 cut(s) 902
BseBI CCWGG 4 cut(s) 223, 527, 918, 1306
BseCI ATCGAT 1 cut(s) 372
BseGI GGATG 1 cut(s) 1168
BseJI GATNNNNATC 1 cut(s) 902
BseLI CCNNNNNNNGG 5 cut(s) 238, 546, 813, 923, 1157
BseMI GCAATG 2 cut(s) 561, 588
BseMII CTCAG 5 cut(s) 109, 473, 548, 1222, 1282
BseNI ACTGG 1 cut(s) 663
BseRI GAGGAG 2 cut(s) 166, 776
BseSI GKGCMC 1 cut(s) 696
BseXI GCAGC 2 cut(s) 649, 727
BseYI CCCAGC 2 cut(s) 75, 593
Bsh1236I CGCG 5 cut(s) 107, 249, 351, 411, 473
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
BshNI GGYRCC 3 cut(s) 302, 691, 1263
BshVI ATCGAT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 1209
BsiHKCI CYCGRG 2 cut(s) 65, 565
BslFI GGGAC 2 cut(s) 334, 473
BslI CCNNNNNNNGG 5 cut(s) 238, 546, 813, 923, 1157
BsmAI GTCTC 2 cut(s) 195, 334
BsmBI CGTCTC 2 cut(s) 195, 334
BsmFI GGGAC 2 cut(s) 334, 473
BsnI GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
BsoBI CYCGRG 2 cut(s) 65, 565
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 4 cut(s) 285, 681, 696, 1209
Bsp143I GATC 3 cut(s) 412, 765, 903
Bsp1720I GCTNAGC 1 cut(s) 1192
Bsp19I CCATGG 2 cut(s) 277, 333
BspACI CCGC 8 cut(s) 228, 256, 261, 306, 349, 351, 530, 635
BspANI GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
BspCNI CTCAG 5 cut(s) 108, 474, 547, 1221, 1281
BspDI ATCGAT 1 cut(s) 372
BspFNI CGCG 5 cut(s) 107, 249, 351, 411, 473
BspLI GGNNCC 8 cut(s) 101, 232, 304, 322, 323, 693, 1032, 1265
BspT104I TTCGAA 1 cut(s) 686
BspT107I GGYRCC 3 cut(s) 302, 691, 1263
BsrBI CCGCTC 1 cut(s) 258
BsrDI GCAATG 2 cut(s) 561, 588
BsrFI RCCGGY 5 cut(s) 299, 308, 640, 724, 1078
BsrI ACTGG 1 cut(s) 663
BssAI RCCGGY 5 cut(s) 299, 308, 640, 724, 1078
BssMI GATC 3 cut(s) 412, 765, 903
BssNI GRCGYC 6 cut(s) 47, 303, 360, 441, 498, 980
BssT1I CCWWGG 2 cut(s) 277, 333
Bst2UI CCWGG 4 cut(s) 223, 527, 918, 1306
Bst4CI ACNGT 2 cut(s) 289, 826
Bst6I CTCTTC 3 cut(s) 164, 995, 1286
BstACI GRCGYC 6 cut(s) 47, 303, 360, 441, 498, 980
BstBAI YACGTR 1 cut(s) 517
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 4 cut(s) 310, 642, 726, 1179
BstDEI CTNAG 8 cut(s) 95, 482, 534, 873, 1192, 1208, 1268, 1287
BstDSI CCRYGG 4 cut(s) 277, 333, 349, 836
BstF5I GGATG 1 cut(s) 1168
BstFNI CGCG 5 cut(s) 107, 249, 351, 411, 473
BstH2I RGCGCY 3 cut(s) 208, 306, 349
BstHHI GCGC 5 cut(s) 207, 305, 348, 411, 1039
BstKTI GATC 3 cut(s) 415, 768, 906
BstMAI GTCTC 2 cut(s) 195, 334
BstMBI GATC 3 cut(s) 412, 765, 903
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 8 cut(s) 118, 255, 309, 357, 408, 487, 536, 1240
BstNI CCWGG 4 cut(s) 223, 527, 918, 1306
BstNSI RCATGY 1 cut(s) 1181
BstPAI GACNNNNGTC 1 cut(s) 326
BstSLI GKGCMC 1 cut(s) 696
BstUI CGCG 5 cut(s) 107, 249, 351, 411, 473
BstV1I GCAGC 2 cut(s) 649, 727
BstV2I GAAGAC 2 cut(s) 142, 436
Bsu15I ATCGAT 1 cut(s) 372
Bsu36I CCTNAGG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 982
BsuRI GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
BsuTUI ATCGAT 1 cut(s) 372
BtgI CCRYGG 4 cut(s) 277, 333, 349, 836
BtrI CACGTC 2 cut(s) 328, 1068
BtsCI GGATG 1 cut(s) 1168
BtsIMutI CAGTG 1 cut(s) 822
Cac8I GCNNGC 4 cut(s) 310, 642, 726, 1179
CfoI GCGC 5 cut(s) 207, 305, 348, 411, 1039
Cfr10I RCCGGY 5 cut(s) 299, 308, 640, 724, 1078
Cfr13I GGNCC 8 cut(s) 132, 230, 274, 321, 337, 654, 833, 1031
Cfr42I CCGCGG 1 cut(s) 352
Cfr9I CCCGGG 1 cut(s) 565
ClaI ATCGAT 1 cut(s) 372
CseI GACGC 8 cut(s) 55, 96, 238, 349, 430, 462, 479, 969
CsiI ACCWGGT 1 cut(s) 1304
Csp6I GTAC 5 cut(s) 550, 1005, 1213, 1264, 1302
CviAII CATG 5 cut(s) 278, 334, 853, 923, 1178
CviQI GTAC 5 cut(s) 550, 1005, 1213, 1264, 1302
DdeI CTNAG 8 cut(s) 95, 482, 534, 873, 1192, 1208, 1268, 1287
DinI GGCGCC 1 cut(s) 304
DpnI GATC 3 cut(s) 414, 767, 905
DpnII GATC 3 cut(s) 412, 765, 903
EaeI YGGCCR 1 cut(s) 933
Eam1104I CTCTTC 3 cut(s) 164, 995, 1286
EarI CTCTTC 3 cut(s) 164, 995, 1286
EciI GGCGGA 1 cut(s) 250
Ecl136II GAGCTC 1 cut(s) 1207
Eco130I CCWWGG 2 cut(s) 277, 333
Eco147I AGGCCT 1 cut(s) 847
Eco24I GRGCYC 3 cut(s) 285, 681, 1209
Eco47I GGWCC 3 cut(s) 132, 321, 1031
Eco53kI GAGCTC 1 cut(s) 1207
Eco57I CTGAAG 4 cut(s) 32, 362, 425, 1265
Eco81I CCTNAGG 1 cut(s) 95
Eco88I CYCGRG 2 cut(s) 65, 565
EcoICRI GAGCTC 1 cut(s) 1207
EcoO109I RGGNCCY 2 cut(s) 321, 1031
EcoRII CCWGG 4 cut(s) 221, 525, 916, 1304
EcoT14I CCWWGG 2 cut(s) 277, 333
EcoT38I GRGCYC 3 cut(s) 285, 681, 1209
EgeI GGCGCC 1 cut(s) 304
EheI GGCGCC 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 277, 333
Esp3I CGTCTC 2 cut(s) 195, 334
FaeI CATG 5 cut(s) 281, 337, 856, 926, 1181
FalI AAGNNNNNCTT 2 cut(s) 680, 712
FaqI GGGAC 2 cut(s) 334, 473
FatI CATG 5 cut(s) 277, 333, 852, 922, 1177
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
FokI GGATG 1 cut(s) 1175
FriOI GRGCYC 3 cut(s) 285, 681, 1209
Fsp4HI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
FspBI CTAG 2 cut(s) 611, 1221
FspI TGCGCA 1 cut(s) 1038
GlaI GCGC 5 cut(s) 206, 304, 347, 410, 1038
GluI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
GsaI CCCAGC 2 cut(s) 79, 597
GsuI CTGGAG 1 cut(s) 777
HaeII RGCGCY 3 cut(s) 208, 306, 349
HaeIII GGCC 8 cut(s) 231, 275, 338, 539, 656, 835, 847, 935
HgaI GACGC 8 cut(s) 55, 96, 238, 349, 430, 462, 479, 969
HhaI GCGC 5 cut(s) 207, 305, 348, 411, 1039
Hin1I GRCGYC 6 cut(s) 47, 303, 360, 441, 498, 980
Hin1II CATG 5 cut(s) 281, 337, 856, 926, 1181
Hin6I GCGC 5 cut(s) 205, 303, 346, 409, 1037
HinP1I GCGC 5 cut(s) 205, 303, 346, 409, 1037
HindIII AAGCTT 2 cut(s) 422, 1189
HinfI GANTC 5 cut(s) 218, 369, 604, 631, 730
HphI GGTGA 6 cut(s) 115, 244, 277, 289, 640, 1093
Hpy166II GTNNAC 4 cut(s) 510, 580, 829, 1173
Hpy188I TCNGA 1 cut(s) 703
Hpy188III TCNNGA 4 cut(s) 67, 319, 428, 611
Hpy8I GTNNAC 4 cut(s) 510, 580, 829, 1173
HpyCH4III ACNGT 2 cut(s) 289, 826
HpyCH4IV ACGT 5 cut(s) 168, 327, 498, 516, 1067
HpyCH4V TGCA 3 cut(s) 523, 559, 1234
HpyF10VI GCNNNNNNNGC 8 cut(s) 118, 255, 309, 357, 408, 487, 536, 1240
HpyF3I CTNAG 8 cut(s) 95, 482, 534, 873, 1192, 1208, 1268, 1287
HpySE526I ACGT 5 cut(s) 168, 327, 498, 516, 1067
Hsp92I GRCGYC 6 cut(s) 47, 303, 360, 441, 498, 980
Hsp92II CATG 5 cut(s) 281, 337, 856, 926, 1181
HspAI GCGC 5 cut(s) 205, 303, 346, 409, 1037
KasI GGCGCC 1 cut(s) 302
KflI GGGWCCC 1 cut(s) 321
KpnI GGTACC 1 cut(s) 1267
KroI GCCGGC 3 cut(s) 308, 640, 724
KroNI GCCGGC 3 cut(s) 310, 642, 726
KspI CCGCGG 1 cut(s) 352
Kzo9I GATC 3 cut(s) 412, 765, 903
LmnI GCTCC 4 cut(s) 212, 263, 919, 1204
Lsp1109I GCAGC 2 cut(s) 649, 727
MabI ACCWGGT 1 cut(s) 1304
MaeI CTAG 2 cut(s) 611, 1221
MaeII ACGT 5 cut(s) 168, 327, 498, 516, 1067
MaeIII GTNAC 4 cut(s) 3, 250, 295, 1085
MalI GATC 3 cut(s) 414, 767, 905
MbiI CCGCTC 1 cut(s) 258
MboI GATC 3 cut(s) 412, 765, 903
MhlI GDGCHC 4 cut(s) 285, 681, 696, 1209
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 3 cut(s) 18, 682, 1054
MluI ACGCGT 3 cut(s) 105, 247, 471
MluNI TGGCCA 1 cut(s) 935
Mly113I GGCGCC 1 cut(s) 303
MlyI GAGTC 2 cut(s) 212, 739
Mox20I TGGCCA 1 cut(s) 935
MroNI GCCGGC 3 cut(s) 308, 640, 724
MroXI GAANNNNTTC 1 cut(s) 491
MscI TGGCCA 1 cut(s) 935
MseI TTAA 1 cut(s) 1122
MslI CAYNNNNRTG 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 2 cut(s) 10, 351
MvaI CCWGG 4 cut(s) 223, 527, 918, 1306
MvnI CGCG 5 cut(s) 107, 249, 351, 411, 473
MwoI GCNNNNNNNGC 8 cut(s) 118, 255, 309, 357, 408, 487, 536, 1240
NaeI GCCGGC 3 cut(s) 310, 642, 726
NarI GGCGCC 1 cut(s) 303
NciI CCSGG 6 cut(s) 51, 202, 541, 566, 567, 808
NcoI CCATGG 2 cut(s) 277, 333
NdeII GATC 3 cut(s) 412, 765, 903
NgoMIV GCCGGC 3 cut(s) 308, 640, 724
NlaIII CATG 5 cut(s) 281, 337, 856, 926, 1181
NlaIV GGNNCC 8 cut(s) 101, 232, 304, 322, 323, 693, 1032, 1265
NmeAIII GCCGAG 2 cut(s) 251, 1176
NmuCI GTSAC 3 cut(s) 3, 250, 295
NsbI TGCGCA 1 cut(s) 1038
NspI RCATGY 1 cut(s) 1181
NspV TTCGAA 1 cut(s) 686
PaeI GCATGC 1 cut(s) 1181
PaeR7I CTCGAG 1 cut(s) 65
PceI AGGCCT 1 cut(s) 847
PcsI WCGNNNNNNNCGW 3 cut(s) 185, 324, 444
PdiI GCCGGC 3 cut(s) 310, 642, 726
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 3 cut(s) 369, 604, 631
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 7 cut(s) 230, 307, 350, 353, 532, 639, 742
Ple19I CGATCG 1 cut(s) 415
PleI GAGTC 2 cut(s) 212, 738
PluTI GGCGCC 1 cut(s) 306
PpsI GAGTC 2 cut(s) 212, 738
Ppu21I YACGTR 1 cut(s) 517
PpuMI RGGWCCY 2 cut(s) 321, 1031
PshAI GACNNNNGTC 1 cut(s) 326
PsiI TTATAA 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 1209
Psp5II RGGWCCY 2 cut(s) 321, 1031
Psp6I CCWGG 4 cut(s) 221, 525, 916, 1304
PspFI CCCAGC 2 cut(s) 75, 593
PspGI CCWGG 4 cut(s) 221, 525, 916, 1304
PspN4I GGNNCC 8 cut(s) 101, 232, 304, 322, 323, 693, 1032, 1265
PspPI GGNCC 8 cut(s) 132, 230, 274, 321, 337, 654, 833, 1031
PspPPI RGGWCCY 2 cut(s) 321, 1031
PsyI GACNNNGTC 1 cut(s) 359
PvuI CGATCG 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 10
RgaI GCGATCGC 1 cut(s) 415
RsaI GTAC 5 cut(s) 551, 1006, 1214, 1265, 1303
RsaNI GTAC 5 cut(s) 550, 1005, 1213, 1264, 1302
RseI CAYNNNNRTG 1 cut(s) 30
SacI GAGCTC 1 cut(s) 1209
SacII CCGCGG 1 cut(s) 352
SaqAI TTAA 1 cut(s) 1122
SatI GCNGC 7 cut(s) 229, 306, 349, 352, 531, 638, 741
Sau3AI GATC 3 cut(s) 412, 765, 903
Sau96I GGNCC 8 cut(s) 132, 230, 274, 321, 337, 654, 833, 1031
SchI GAGTC 2 cut(s) 212, 739
SduI GDGCHC 4 cut(s) 285, 681, 696, 1209
SexAI ACCWGGT 1 cut(s) 1304
SfaAI GCGATCGC 1 cut(s) 415
SfoI GGCGCC 1 cut(s) 304
Sfr274I CTCGAG 1 cut(s) 65
Sfr303I CCGCGG 1 cut(s) 352
SfuI TTCGAA 1 cut(s) 686
SgfI GCGATCGC 1 cut(s) 415
SgrAI CRCCGGYG 1 cut(s) 299
SgrBI CCGCGG 1 cut(s) 352
SinI GGWCC 3 cut(s) 132, 321, 1031
SlaI CTCGAG 1 cut(s) 65
SmaI CCCGGG 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
SphI GCATGC 1 cut(s) 1181
Sse9I AATT 3 cut(s) 18, 682, 1054
SseBI AGGCCT 1 cut(s) 847
SsiI CCGC 8 cut(s) 228, 256, 261, 306, 349, 351, 530, 635
SspDI GGCGCC 1 cut(s) 302
SspMI CTAG 2 cut(s) 611, 1221
SstI GAGCTC 1 cut(s) 1209
StuI AGGCCT 1 cut(s) 847
StyI CCWWGG 2 cut(s) 277, 333
TaaI ACNGT 2 cut(s) 289, 826
TaiI ACGT 5 cut(s) 171, 330, 501, 519, 1070
TaqI TCGA 6 cut(s) 44, 66, 372, 495, 686, 800
TasI AATT 3 cut(s) 18, 682, 1054
TatI WGTACW 1 cut(s) 1004
TauI GCSGC 5 cut(s) 231, 308, 351, 354, 533
TfiI GAWTC 3 cut(s) 369, 604, 631
Tru1I TTAA 1 cut(s) 1122
Tru9I TTAA 1 cut(s) 1122
TscAI CASTG 1 cut(s) 829
TseFI GTSAC 3 cut(s) 3, 250, 295
TseI GCWGC 2 cut(s) 637, 740
Tsp45I GTSAC 3 cut(s) 3, 250, 295
TspDTI ATGAA 1 cut(s) 142
TspMI CCCGGG 1 cut(s) 565
TspRI CASTG 1 cut(s) 829
Tth111I GACNNNGTC 1 cut(s) 359
VpaK11BI GGWCC 3 cut(s) 132, 321, 1031
XbaI TCTAGA 1 cut(s) 610
XceI RCATGY 1 cut(s) 1181
XhoI CTCGAG 1 cut(s) 65
XmaI CCCGGG 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 2 cut(s) 611, 1221
ZraI GACGTC 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.