Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032018.1

Orthogroup ID

OG0008152

Physical Location & Seq

Genomic Coordinates Forward (+)

383 .. 3606

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032018.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1545 bp

atggtttacgagttttgttttgtaagtgttgtcaatacagtttgggattggcgtggaacattatcatctacagtttgtaaagcttattctggtgaagcaagtagtgagaatggtgctgcagtggctaaaatccatgaccgtgaattcaaatttaaccgggtcaattgccttgtgtgggtgctgcatgaatctgctaggagcttctcccttgcgattgaggcgctagaattgacaggaagtagtcctggggttgcaatgtcatggtctgggaaggatatacatgcatggcatagacggctttcttatcaggtggcactttatgcgttgttgaaaacagcgattgaagtagaaactttgctttctagtgaacgtcattacagtgactcttctctagttagcgatattggtgtagcagggatagttgtggctatcagctgctgctctgcagtggctaaattgggtcctgggcatgtaaagtgttcttttttcgcatttggtattgaggatgttatggtagagctcatggatctctcacacagtcttgtatcggtggaaagattacatcatttggccattgaggcaggatttgaattggactttctgtcccattttggtagaaaggttctgctaagcaacaaaggggaagaggtagaattttggattgggttggcttatgaaaaactttcatcagcatttcacaatgaaagtgtgattccaggcaaccagaattttcatgacaaggatcaagcagatactttggctactttgggactgtttgcatatcttggaagaaagacgagattattcttgtcaacaatgggcataaacgatattgatgatctacttaaggacttccttagctacttggagtgtggtagcattttcatttacccagagtttgcttccatagcagtgtatcaacagttcatggaggtagtaactgatgaaattggatggcttgatttttacgctgcatgtcctccaaaaagtattcaagagagacgaaaaagcaaattgcatacgattcaggcggaaaaagagattgctctttctgctgtatttactgtatgctatgatgtctactctggatttgctcacttttatcgttcaactcaactgtccctggatagtgatttgctagaatttttgctccagagtcagagcttgcttactatttgtttggaagactactggtctgcctacgataaatcaagcagtgattggtcaatgattgcagactgtggttgtgttgcaaccaaggtatcaaaggtatcaacaatcgccaccaaggtatctttaacaatggacgcacatgatgcacaatgggagccaagtcacttaaaaaccgccggagatagtgaaaatcataggtctaaacacagtcttcaactgagaacgaatctgatgttctgcatgtatttgttggcatctctcttggtatttcctttaatggaaggctccacgcttgcttgggatggaaagcataacgtctatggaggagggcagtgccagaaaacaaagacatctccatcgaatattgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LETM1

Protein Analysis

514

Amino Acids

57.26

Weight (kDa)

5.44

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g32010 FvH4_6g32010
malus_domestica	MD09G1207000.v1.1 MD17G1187700.v1.1
prunus_persica	Prupe.3G063100_v2.0.a1 Prupe.3G063100_v2.0.a1 Prupe.3G063100_v2.0.a1 Prupe.3G063100_v2.0.a1 Prupe.3G063100_v2.0.a1 Prupe.3G063100_v2.0.a1 Prupe.3G063100_v2.0.a1 Prupe.3G063100_v2.0.a1
pyrus_communis	pycom09g12340 pycom17g19660
rosa_chinensis	RchiOBHm_Chr2g0139611
rosa_laevigata	RLG00000019822
rosa_multiflora	Rmu_sc0032018.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105350
rosa_rugosa	Rorug02G0358700
rosa_samantha	Rh2AG408600 Rh2BG419100 Rh2CG394600 Rh2DG428200
rosa_wichuraiana	Rw2G033510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1080
AciI	CCGC	2 cut(s)	1031, 1347
AclWI	GGATC	2 cut(s)	534, 750
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	5 cut(s)	143, 149, 653, 727, 1142
AfiI	CCNNNNNNNGG	1 cut(s)	175
AflII	CTTAAG	1 cut(s)	845
AgsI	TTSAA	7 cut(s)	148, 331, 344, 590, 995, 1110, 1388
AhdI	GACNNNNNGTC	2 cut(s)	601, 1192
AjnI	CCWGG	4 cut(s)	244, 463, 715, 1122
AjuI	GAANNNNNNNTTGG	2 cut(s)	645, 677
AluBI	AGCT	6 cut(s)	83, 201, 435, 520, 861, 1164
AluI	AGCT	6 cut(s)	83, 201, 435, 520, 861, 1164
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	994
AlwI	GGATC	2 cut(s)	534, 750
AlwNI	CAGNNNCTG	1 cut(s)	438
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	5 cut(s)	116, 181, 435, 438, 971
ApoI	RAATTY	5 cut(s)	143, 149, 653, 727, 1142
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	461
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	461
BaeI	ACNNNNGTAYC	4 cut(s)	1245, 1275, 1278, 1308
BalI	TGGCCA	1 cut(s)	572
BanII	GRGCYC	1 cut(s)	522
BbsI	GAAGAC	2 cut(s)	1191, 1376
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	5 cut(s)	103, 168, 422, 425, 958
BccI	CCATC	3 cut(s)	948, 1469, 1537
BceAI	ACGGC	1 cut(s)	311
BciT130I	CCWGG	4 cut(s)	246, 465, 717, 1124
BcnI	CCSGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	994
BfaI	CTAG	5 cut(s)	195, 224, 363, 392, 1139
BfmI	CTRYAG	3 cut(s)	69, 117, 444
BfoI	RGCGCY	1 cut(s)	224
BfrI	CTTAAG	1 cut(s)	845
BglI	GCCNNNNNGGC	1 cut(s)	578
BisI	GCNGC	5 cut(s)	117, 182, 436, 439, 972
BlpI	GCTNAGC	1 cut(s)	629
BlsI	GCNGC	5 cut(s)	118, 183, 437, 440, 973
Bme1390I	CCNGG	5 cut(s)	158, 246, 465, 717, 1124
Bme18I	GGWCC	1 cut(s)	461
BmeRI	GACNNNNNGTC	2 cut(s)	601, 1192
BmgT120I	GGNCC	1 cut(s)	461
BmiI	GGNNCC	3 cut(s)	462, 1329, 1459
BmrFI	CCNGG	5 cut(s)	158, 246, 465, 717, 1124
BmsI	GCATC	2 cut(s)	1306, 1436
BpiI	GAAGAC	2 cut(s)	1191, 1376
BpmI	CTGGAG	1 cut(s)	1136
Bpu10I	CCTNAGC	1 cut(s)	857
Bpu1102I	GCTNAGC	1 cut(s)	629
BpuMI	CCSGG	1 cut(s)	158
BsaJI	CCNNGG	5 cut(s)	245, 464, 1122, 1257, 1287
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	1196
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	4 cut(s)	246, 465, 717, 1124
BseDI	CCNNGG	5 cut(s)	245, 464, 1122, 1257, 1287
BseGI	GGATG	3 cut(s)	511, 959, 1480
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	1382
BseNI	ACTGG	1 cut(s)	1196
BseRI	GAGGAG	1 cut(s)	1512
BseXI	GCAGC	5 cut(s)	103, 168, 422, 425, 958
BshFI	GGCC	1 cut(s)	572
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	157, 1350
BslFI	GGGAC	3 cut(s)	589, 783, 1105
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	994
BsmBI	CGTCTC	1 cut(s)	994
BsmFI	GGGAC	3 cut(s)	589, 783, 1105
BsnI	GGCC	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	526, 742, 838
Bsp1720I	GCTNAGC	1 cut(s)	629
BspACI	CCGC	2 cut(s)	1031, 1347
BspANI	GGCC	1 cut(s)	572
BspCNI	CTCAG	1 cut(s)	1383
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	3 cut(s)	462, 1329, 1459
BspMAI	CTGCAG	2 cut(s)	121, 448
BspPI	GGATC	2 cut(s)	534, 750
BspTI	CTTAAG	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	1196
BssECI	CCNNGG	5 cut(s)	245, 464, 1122, 1257, 1287
BssMI	GATC	3 cut(s)	526, 742, 838
BssT1I	CCWWGG	2 cut(s)	1257, 1287
Bst2UI	CCWGG	4 cut(s)	246, 465, 717, 1124
Bst6I	CTCTTC	2 cut(s)	391, 639
BstAFI	CTTAAG	1 cut(s)	845
BstAPI	GCANNNNNTGC	2 cut(s)	320, 1316
BstC8I	GCNNGC	2 cut(s)	1166, 1467
BstDEI	CTNAG	3 cut(s)	629, 857, 1391
BstF5I	GGATG	3 cut(s)	511, 959, 1480
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	529, 745, 841
BstMAI	GTCTC	1 cut(s)	994
BstMBI	GATC	3 cut(s)	526, 742, 838
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 218, 295, 320, 578, 908, 1052, 1316
BstNI	CCWGG	4 cut(s)	246, 465, 717, 1124
BstNSI	RCATGY	4 cut(s)	284, 473, 978, 1417
BstSCI	CCNGG	5 cut(s)	156, 244, 463, 715, 1122
BstSFI	CTRYAG	3 cut(s)	69, 117, 444
BstV1I	GCAGC	5 cut(s)	103, 168, 422, 425, 958
BstV2I	GAAGAC	2 cut(s)	1191, 1376
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	572
BtsCI	GGATG	3 cut(s)	511, 959, 1480
BtsI	GCAGTG	5 cut(s)	126, 453, 918, 1222, 1511
BtsIMutI	CAGTG	6 cut(s)	126, 385, 453, 918, 1222, 1511
Cac8I	GCNNGC	2 cut(s)	1166, 1467
CaiI	CAGNNNCTG	1 cut(s)	438
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	461
CseI	GACGC	1 cut(s)	1316
DdeI	CTNAG	3 cut(s)	629, 857, 1391
DpnI	GATC	3 cut(s)	528, 744, 840
DpnII	GATC	3 cut(s)	526, 742, 838
DriI	GACNNNNNGTC	2 cut(s)	601, 1192
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	391, 639
Eam1105I	GACNNNNNGTC	2 cut(s)	601, 1192
EarI	CTCTTC	2 cut(s)	391, 639
EciI	GGCGGA	1 cut(s)	1046
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	1257, 1287
Eco24I	GRGCYC	1 cut(s)	522
Eco47I	GGWCC	1 cut(s)	461
Eco53kI	GAGCTC	1 cut(s)	520
EcoICRI	GAGCTC	1 cut(s)	520
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	4 cut(s)	244, 463, 715, 1122
EcoT14I	CCWWGG	2 cut(s)	1257, 1287
EcoT22I	ATGCAT	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	522
ErhI	CCWWGG	2 cut(s)	1257, 1287
Esp3I	CGTCTC	1 cut(s)	994
FaqI	GGGAC	3 cut(s)	589, 783, 1105
FblI	GTMKAC	1 cut(s)	1080
Fnu4HI	GCNGC	5 cut(s)	117, 182, 436, 439, 972
FokI	GGATG	3 cut(s)	518, 966, 1487
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	5 cut(s)	117, 182, 436, 439, 972
FspBI	CTAG	5 cut(s)	195, 224, 363, 392, 1139
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	5 cut(s)	117, 182, 436, 439, 972
GsuI	CTGGAG	1 cut(s)	1136
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	1 cut(s)	572
HapII	CCGG	2 cut(s)	157, 1350
HgaI	GACGC	1 cut(s)	1316
HhaI	GCGC	1 cut(s)	223
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	813
HindII	GTYRAC	1 cut(s)	813
HindIII	AAGCTT	1 cut(s)	81
HinfI	GANTC	6 cut(s)	188, 383, 712, 1024, 1156, 1399
HpaII	CCGG	2 cut(s)	157, 1350
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	4 cut(s)	7, 368, 813, 1081
Hpy188I	TCNGA	2 cut(s)	1161, 1404
Hpy188III	TCNNGA	4 cut(s)	734, 995, 1086, 1153
Hpy8I	GTNNAC	4 cut(s)	7, 368, 813, 1081
HpyAV	CCTTC	2 cut(s)	265, 1448
HpyCH4IV	ACGT	2 cut(s)	370, 1488
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 218, 295, 320, 578, 908, 1052, 1316
HpyF3I	CTNAG	3 cut(s)	629, 857, 1391
HpySE526I	ACGT	2 cut(s)	370, 1488
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	526, 742, 838
LmnI	GCTCC	4 cut(s)	198, 1155, 1327, 1463
Lsp1109I	GCAGC	5 cut(s)	103, 168, 422, 425, 958
LweI	GCATC	2 cut(s)	1306, 1436
MaeI	CTAG	5 cut(s)	195, 224, 363, 392, 1139
MaeII	ACGT	2 cut(s)	370, 1488
MaeIII	GTNAC	3 cut(s)	380, 937, 1334
MalI	GATC	3 cut(s)	528, 744, 840
MboI	GATC	3 cut(s)	526, 742, 838
MboII	GAAGA	5 cut(s)	378, 656, 801, 1196, 1376
MfeI	CAATTG	1 cut(s)	163
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	522
MlsI	TGGCCA	1 cut(s)	572
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	2 cut(s)	377, 1165
MnlI	CCTC	8 cut(s)	211, 496, 571, 640, 925, 990, 1490, 1493
Mox20I	TGGCCA	1 cut(s)	572
Mph1103I	ATGCAT	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	6 cut(s)	153, 846, 1298, 1340, 1448, 1543
MslI	CAYNNNNRTG	3 cut(s)	138, 378, 911
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	435
MspCI	CTTAAG	1 cut(s)	845
MspI	CCGG	2 cut(s)	157, 1350
MspR9I	CCNGG	5 cut(s)	158, 246, 465, 717, 1124
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	4 cut(s)	246, 465, 717, 1124
MwoI	GCNNNNNNNGC	8 cut(s)	122, 218, 295, 320, 578, 908, 1052, 1316
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	3 cut(s)	526, 742, 838
NlaIV	GGNNCC	3 cut(s)	462, 1329, 1459
NmuCI	GTSAC	2 cut(s)	380, 1334
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	4 cut(s)	284, 473, 978, 1417
PagI	TCATGA	1 cut(s)	733
PfeI	GAWTC	4 cut(s)	188, 712, 1024, 1399
PkrI	GCNGC	5 cut(s)	118, 183, 437, 440, 973
PleI	GAGTC	2 cut(s)	377, 1164
PpsI	GAGTC	2 cut(s)	377, 1164
PpuMI	RGGWCCY	1 cut(s)	461
Psp124BI	GAGCTC	1 cut(s)	522
Psp5II	RGGWCCY	1 cut(s)	461
Psp6I	CCWGG	4 cut(s)	244, 463, 715, 1122
PspGI	CCWGG	4 cut(s)	244, 463, 715, 1122
PspN4I	GGNNCC	3 cut(s)	462, 1329, 1459
PspPI	GGNCC	1 cut(s)	461
PspPPI	RGGWCCY	1 cut(s)	461
PsrI	GAACNNNNNNTAC	2 cut(s)	908, 940
PstI	CTGCAG	2 cut(s)	121, 448
PstNI	CAGNNNCTG	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	435
RseI	CAYNNNNRTG	3 cut(s)	138, 378, 911
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	6 cut(s)	153, 846, 1298, 1340, 1448, 1543
SatI	GCNGC	5 cut(s)	117, 182, 436, 439, 972
Sau3AI	GATC	3 cut(s)	526, 742, 838
Sau96I	GGNCC	1 cut(s)	461
SchI	GAGTC	2 cut(s)	377, 1165
ScrFI	CCNGG	5 cut(s)	158, 246, 465, 717, 1124
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	2 cut(s)	1306, 1436
SfcI	CTRYAG	3 cut(s)	69, 117, 444
SinI	GGWCC	1 cut(s)	461
SmiMI	CAYNNNNRTG	3 cut(s)	138, 378, 911
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SsiI	CCGC	2 cut(s)	1031, 1347
SspI	AATATT	1 cut(s)	1537
SspMI	CTAG	5 cut(s)	195, 224, 363, 392, 1139
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	5 cut(s)	156, 244, 463, 715, 1122
StyI	CCWWGG	2 cut(s)	1257, 1287
TaiI	ACGT	2 cut(s)	373, 1491
TaqI	TCGA	1 cut(s)	1532
TfiI	GAWTC	4 cut(s)	188, 712, 1024, 1399
Tru1I	TTAA	6 cut(s)	153, 846, 1298, 1340, 1448, 1543
Tru9I	TTAA	6 cut(s)	153, 846, 1298, 1340, 1448, 1543
TscAI	CASTG	6 cut(s)	126, 385, 453, 918, 1222, 1511
TseFI	GTSAC	2 cut(s)	380, 1334
TseI	GCWGC	5 cut(s)	116, 181, 435, 438, 971
Tsp45I	GTSAC	2 cut(s)	380, 1334
TspDTI	ATGAA	8 cut(s)	201, 675, 690, 717, 722, 874, 916, 960
TspRI	CASTG	6 cut(s)	126, 385, 453, 918, 1222, 1511
Vha464I	CTTAAG	1 cut(s)	845
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	5 cut(s)	143, 149, 653, 727, 1142
XceI	RCATGY	4 cut(s)	284, 473, 978, 1417
XmiI	GTMKAC	1 cut(s)	1080
XspI	CTAG	5 cut(s)	195, 224, 363, 392, 1139
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.