Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032509.1

Orthogroup ID

OG0017826

Physical Location & Seq

Genomic Coordinates Reverse (-)

1085 .. 2497

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032509.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgatagtgcgagcttttaagcacatacttcaggcagtgattgctgctgttaataacactgagaaaatggctgcctcgattgctgctgcattgaatcttatgttgggggctccagaaaatgaagaattcaataagtctttcaatgtgcattcccttgtgtggagatggctgaaagtattcttgcgaaagagatatggatgggatgttagcagcttcaactacaatgatgtgaggagatttgcgattctaggtggcctgtgtcataaggtgggcattgagatggttccacgagattttgatatggagtctccaaatccatttcagagttctgatattgtcagcttagttccagtacataagcaagctgcatgctcttcggcagatggtaggcaactattggagtcatcaaaaacagccttagataagggaaaacttgaagatgcagttgcatatggcactaaggctacaatttatcaacaaaaggctctggatatcaatgagagagaattagggcttgaccatccagacaccatgaagagttatggggatcttgctgtgttctattacagacttcaacatacagagctggctctcaagtatggtcttttgcttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLU_N TPR_12 eIF3_p135

Protein Analysis

205

Amino Acids

23.07

Weight (kDa)

7.78

Isoelectric Point (pI)

51.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017826)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0224021
rosa_multiflora	Rmu_sc0000768.1_g000019 Rmu_sc0032509.1_g000001 Rmu_ssc0000100.1_g000020
rosa_roxburghii	Rroxscaffold_5G00351060
rosa_samantha	Rh3AG104900 Rh3CG110200 Rh6AG076200 Rh6AG076500
rosa_wichuraiana	Rw1G020680 Rw4G009100 Rw5G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	14
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	6 cut(s)	94, 130, 142, 217, 437, 575
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	5 cut(s)	14, 213, 342, 365, 586
AluI	AGCT	5 cut(s)	14, 213, 342, 365, 586
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	555
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	6 cut(s)	44, 71, 83, 86, 210, 365
ApoI	RAATTY	1 cut(s)	125
Asp700I	GAANNNNTTC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	112
BauI	CACGAG	1 cut(s)	288
BbvI	GCAGC	6 cut(s)	31, 58, 70, 73, 222, 352
BccI	CCATC	5 cut(s)	159, 192, 274, 377, 528
BcgI	CGANNNNNNTGC	2 cut(s)	357, 391
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	6 cut(s)	45, 72, 84, 87, 211, 366
BlsI	GCNGC	6 cut(s)	46, 73, 85, 88, 212, 367
BmiI	GGNNCC	2 cut(s)	111, 285
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	96
BpuEI	CTTGAG	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	350
BseGI	GGATG	3 cut(s)	203, 208, 520
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	6 cut(s)	31, 58, 70, 73, 222, 352
BshFI	GGCC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	148
BsnI	GGCC	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	547
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	111, 285
BspPI	GGATC	1 cut(s)	555
BspQI	GCTCTTC	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	350
BssMI	GATC	1 cut(s)	547
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst6I	CTCTTC	2 cut(s)	379, 530
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	4 cut(s)	12, 363, 370, 588
BstDEI	CTNAG	4 cut(s)	60, 343, 418, 459
BstF5I	GGATG	3 cut(s)	203, 208, 520
BstKTI	GATC	1 cut(s)	550
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	547
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 80
BstNSI	RCATGY	1 cut(s)	372
BstV1I	GCAGC	6 cut(s)	31, 58, 70, 73, 222, 352
BstX2I	RGATCY	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	3 cut(s)	203, 208, 520
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	2 cut(s)	42, 57
Cac8I	GCNNGC	4 cut(s)	12, 363, 370, 588
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	2 cut(s)	369, 532
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	4 cut(s)	60, 343, 418, 459
DpnI	GATC	1 cut(s)	549
DpnII	GATC	1 cut(s)	547
Eam1104I	CTCTTC	2 cut(s)	379, 530
EarI	CTCTTC	2 cut(s)	379, 530
Eco24I	GRGCYC	1 cut(s)	112
Eco32I	GATATC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	125
EcoRV	GATATC	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	112
FaeI	CATG	2 cut(s)	372, 535
FatI	CATG	2 cut(s)	368, 531
FauNDI	CATATG	1 cut(s)	451
Fnu4HI	GCNGC	6 cut(s)	45, 72, 84, 87, 211, 366
FokI	GGATG	3 cut(s)	210, 215, 507
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	6 cut(s)	45, 72, 84, 87, 211, 366
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	6 cut(s)	45, 72, 84, 87, 211, 366
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	372, 535
HinfI	GANTC	4 cut(s)	94, 244, 305, 401
Hpy188I	TCNGA	2 cut(s)	324, 331
Hpy188III	TCNNGA	3 cut(s)	113, 488, 524
HpyCH4V	TGCA	5 cut(s)	89, 148, 368, 443, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 80
HpyF3I	CTNAG	4 cut(s)	60, 343, 418, 459
Hsp92II	CATG	2 cut(s)	372, 535
Kzo9I	GATC	1 cut(s)	547
LguI	GCTCTTC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	17, 126, 269, 363, 473, 537, 572
Lsp1109I	GCAGC	6 cut(s)	31, 58, 70, 73, 222, 352
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	248
MalI	GATC	1 cut(s)	549
MboI	GATC	1 cut(s)	547
MboII	GAAGA	4 cut(s)	134, 366, 449, 547
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	3 cut(s)	125, 468, 506
MlyI	GAGTC	2 cut(s)	314, 410
MnlI	CCTC	2 cut(s)	85, 225
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	3 cut(s)	18, 51, 616
MslI	CAYNNNNRTG	1 cut(s)	278
Mva1269I	GAATGC	1 cut(s)	148
MwoI	GCNNNNNNNGC	2 cut(s)	41, 80
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	1 cut(s)	547
NlaIII	CATG	2 cut(s)	372, 535
NlaIV	GGNNCC	2 cut(s)	111, 285
NspI	RCATGY	1 cut(s)	372
PaeI	GCATGC	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	379
PctI	GAATGC	1 cut(s)	148
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	94, 244
PkrI	GCNGC	6 cut(s)	46, 73, 85, 88, 212, 367
PleI	GAGTC	2 cut(s)	313, 409
PpsI	GAGTC	2 cut(s)	313, 409
PspN4I	GGNNCC	2 cut(s)	111, 285
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	379
SaqAI	TTAA	3 cut(s)	18, 51, 616
SatI	GCNGC	6 cut(s)	45, 72, 84, 87, 211, 366
Sau3AI	GATC	1 cut(s)	547
SchI	GAGTC	2 cut(s)	314, 410
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	7 cut(s)	16, 215, 253, 270, 344, 367, 588
SfaNI	GCATC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	3 cut(s)	125, 468, 506
SspMI	CTAG	1 cut(s)	248
TaqI	TCGA	1 cut(s)	77
TasI	AATT	3 cut(s)	125, 468, 506
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	94, 244
Tru1I	TTAA	3 cut(s)	18, 51, 616
Tru9I	TTAA	3 cut(s)	18, 51, 616
TscAI	CASTG	2 cut(s)	42, 64
TseI	GCWGC	6 cut(s)	44, 71, 83, 86, 210, 365
TspDTI	ATGAA	2 cut(s)	135, 548
TspRI	CASTG	2 cut(s)	42, 64
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.