Rh6AG076200

Translation initiation factor eIF3 subunit 135

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017826
Physical Location & Seq
Reverse (-)
10839400 .. 10843764
4365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG076200.1

Sequence Viewer

Length: 339 bp
ATGGTTCCACGAGATTTTGATATGGAGTCTCCAAATCCATTTCAGAGTTCTGATATTGTCAGCTTAGTTCCAATACATAAGCAAGCTGCATGCTCTTCGGCAGATGGTAGGAAACTATTGGAGTCATCAAAAACAGCCTTAGATAAGGGAAAACTTGAAGATGCAGTTGCATATGGCACTAAGGCTACAATTTATCAACAAAAGGCTCTGGATATCAATGAGAGAGAATTAGGGCTTGACCATCCAGACACCATGAAGAGTTATGGGGATCTTGCTGTGTTCTATTACAGACTTCAACATACAGAGATGGCTCTCAAGTATGGTCTTTTGCTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

112

Amino Acids

12.51

Weight (kDa)

5.52

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 61 - 107 7.3e-07 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 276
AgsI TTSAA 2 cut(s) 158, 296
AluBI AGCT 2 cut(s) 63, 86
AluI AGCT 2 cut(s) 63, 86
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 86
BauI CACGAG 1 cut(s) 9
BbvI GCAGC 1 cut(s) 73
BccI CCATC 3 cut(s) 98, 249, 301
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BcoDI GTCTC 1 cut(s) 33
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 151
BpuEI CTTGAG 1 cut(s) 299
BseGI GGATG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 276
BspQI GCTCTTC 1 cut(s) 100
BssMI GATC 1 cut(s) 268
BssSI CACGAG 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 9
Bst6I CTCTTC 2 cut(s) 100, 251
BstC8I GCNNGC 2 cut(s) 84, 91
BstDEI CTNAG 3 cut(s) 64, 139, 180
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 268
BstNSI RCATGY 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 73
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 2 cut(s) 84, 91
CviAII CATG 2 cut(s) 90, 253
CviJI RGCY 7 cut(s) 63, 86, 137, 185, 206, 235, 311
CviKI_1 RGCY 7 cut(s) 63, 86, 137, 185, 206, 235, 311
DdeI CTNAG 3 cut(s) 64, 139, 180
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 100, 251
EarI CTCTTC 2 cut(s) 100, 251
Eco32I GATATC 1 cut(s) 214
EcoRV GATATC 1 cut(s) 214
FaeI CATG 2 cut(s) 93, 256
FaiI YATR 9 cut(s) 23, 78, 91, 172, 174, 254, 264, 300, 321
FatI CATG 2 cut(s) 89, 252
FauNDI CATATG 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
Hin1II CATG 2 cut(s) 93, 256
HinfI GANTC 2 cut(s) 26, 122
Hpy188I TCNGA 2 cut(s) 45, 52
Hpy188III TCNNGA 2 cut(s) 209, 245
HpyCH4V TGCA 3 cut(s) 89, 164, 170
HpyF3I CTNAG 3 cut(s) 64, 139, 180
Hsp92II CATG 2 cut(s) 93, 256
Kzo9I GATC 1 cut(s) 268
LguI GCTCTTC 1 cut(s) 100
LpnPI CCDG 2 cut(s) 194, 258
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 151
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 3 cut(s) 87, 170, 268
MflI RGATCY 1 cut(s) 268
MluCI AATT 2 cut(s) 189, 227
MlyI GAGTC 2 cut(s) 35, 131
MseI TTAA 1 cut(s) 337
NdeI CATATG 1 cut(s) 172
NdeII GATC 1 cut(s) 268
NlaIII CATG 2 cut(s) 93, 256
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 93
PaeI GCATGC 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 100
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 2 cut(s) 34, 130
PpsI GAGTC 2 cut(s) 34, 130
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 268
SapI GCTCTTC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 337
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 268
SchI GAGTC 2 cut(s) 35, 131
SetI ASST 2 cut(s) 65, 88
SfaNI GCATC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
SphI GCATGC 1 cut(s) 93
Sse9I AATT 2 cut(s) 189, 227
TasI AATT 2 cut(s) 189, 227
Tru1I TTAA 1 cut(s) 337
Tru9I TTAA 1 cut(s) 337
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 269
XceI RCATGY 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.