Rw5G020600

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017826
Physical Location & Seq
Reverse (-)
27161551 .. 27162502
952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G020600.1

Sequence Viewer

Length: 504 bp
ATGATAGTGCGAGCTTTTAAGCACATACTTCAGGCAGTGATTGGTGATGTTAATAACACTGAGAAAATGGTTGCCTCGATTGCTGCTGCATTGAATCTTATGTTGGGGGCTCCAGAAAATGAAGAATTCAATAAGTCTTTCAATGTGCATTCCCTTGTGTGGAGATGGCTGGAAGTATTCTTGCGAAAGAGATATGGATGGGATGTTAGCAGCTTCAACTACAATGATGTGAGGAGATTTGCGATTCTACGTGGCCTGTGTCATAAGGTGGGCATTGAGATGGTTCCACGAGATTTTGATATGGAGTCTCCAAATCCATTTCAGAGTTCTGATATTGTCAGCTTAGTTCCAGTACATAAGCAAGCTGCATGCTCTTCGGCAGATGGTAGGCAACTATTGGAGTCATCAAAAACAGCCTTAGATAAGGGAAAACTTGAAGATGCAGTTGCATATGGCACTAAGTTATGTGATGCTCGAACAGTTTCTACTTCATTTGTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

167

Amino Acids

18.76

Weight (kDa)

7.74

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3_p135 PF12807 1 - 100 1.1e-08 Translation initiation factor eIF3 subunit 135
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 14
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 5 cut(s) 94, 130, 142, 217, 437
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AluBI AGCT 4 cut(s) 14, 213, 342, 365
AluI AGCT 4 cut(s) 14, 213, 342, 365
Alw26I GTCTC 1 cut(s) 312
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 4 cut(s) 83, 86, 210, 365
ApoI RAATTY 1 cut(s) 125
Asp700I GAANNNNTTC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 56
BanII GRGCYC 1 cut(s) 112
BauI CACGAG 1 cut(s) 288
BbvI GCAGC 4 cut(s) 70, 73, 222, 352
BccI CCATC 4 cut(s) 159, 192, 274, 377
BcgI CGANNNNNNTGC 2 cut(s) 357, 391
BcoDI GTCTC 1 cut(s) 312
BisI GCNGC 4 cut(s) 84, 87, 211, 366
BlsI GCNGC 4 cut(s) 85, 88, 212, 367
BmiI GGNNCC 2 cut(s) 111, 285
BmsI GCATC 2 cut(s) 430, 460
BpmI CTGGAG 1 cut(s) 96
BsaAI YACGTR 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 350
BseGI GGATG 2 cut(s) 203, 208
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 247
BseXI GCAGC 4 cut(s) 70, 73, 222, 352
BshFI GGCC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 148
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 112
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 111, 285
BspQI GCTCTTC 1 cut(s) 379
BsrI ACTGG 1 cut(s) 350
BssSI CACGAG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 1 cut(s) 379
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 12, 363, 370
BstDEI CTNAG 4 cut(s) 60, 343, 418, 459
BstF5I GGATG 2 cut(s) 203, 208
BstMAI GTCTC 1 cut(s) 312
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 372
BstV1I GCAGC 4 cut(s) 70, 73, 222, 352
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 2 cut(s) 203, 208
BtsI GCAGTG 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 42, 57
Cac8I GCNNGC 3 cut(s) 12, 363, 370
Csp6I GTAC 1 cut(s) 353
CviAII CATG 1 cut(s) 369
CviJI RGCY 8 cut(s) 14, 110, 169, 213, 255, 342, 365, 416
CviKI_1 RGCY 8 cut(s) 14, 110, 169, 213, 255, 342, 365, 416
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 4 cut(s) 60, 343, 418, 459
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 112
Eco57I CTGAAG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 1 cut(s) 372
FatI CATG 1 cut(s) 368
FauNDI CATATG 1 cut(s) 451
Fnu4HI GCNGC 4 cut(s) 84, 87, 211, 366
FokI GGATG 2 cut(s) 210, 215
FriOI GRGCYC 1 cut(s) 112
Fsp4HI GCNGC 4 cut(s) 84, 87, 211, 366
GluI GCNGC 4 cut(s) 84, 87, 211, 366
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 1 cut(s) 372
HinfI GANTC 4 cut(s) 94, 244, 305, 401
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 2 cut(s) 324, 331
Hpy188III TCNNGA 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 5 cut(s) 89, 148, 368, 443, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 4 cut(s) 60, 343, 418, 459
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 1 cut(s) 372
LguI GCTCTTC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 17, 126, 155, 269, 363
Lsp1109I GCAGC 4 cut(s) 70, 73, 222, 352
LweI GCATC 2 cut(s) 430, 460
MaeII ACGT 1 cut(s) 250
MboII GAAGA 3 cut(s) 134, 366, 449
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 1 cut(s) 125
MlyI GAGTC 2 cut(s) 314, 410
MnlI CCTC 2 cut(s) 85, 225
MroXI GAANNNNTTC 1 cut(s) 481
MseI TTAA 2 cut(s) 18, 51
MslI CAYNNNNRTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeI CATATG 1 cut(s) 451
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 2 cut(s) 111, 285
NspI RCATGY 1 cut(s) 372
PaeI GCATGC 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 379
PctI GAATGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 94, 244
PkrI GCNGC 4 cut(s) 85, 88, 212, 367
PleI GAGTC 2 cut(s) 313, 409
PpsI GAGTC 2 cut(s) 313, 409
Ppu21I YACGTR 1 cut(s) 251
PspN4I GGNNCC 2 cut(s) 111, 285
PsrI GAACNNNNNNTAC 2 cut(s) 469, 501
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 18, 51
SatI GCNGC 4 cut(s) 84, 87, 211, 366
SchI GAGTC 2 cut(s) 314, 410
SduI GDGCHC 1 cut(s) 112
SetI ASST 6 cut(s) 16, 215, 253, 270, 344, 367
SfaNI GCATC 2 cut(s) 430, 460
SmiMI CAYNNNNRTG 1 cut(s) 278
SphI GCATGC 1 cut(s) 372
Sse9I AATT 1 cut(s) 125
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 1 cut(s) 253
TaqI TCGA 2 cut(s) 77, 475
TasI AATT 1 cut(s) 125
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 2 cut(s) 94, 244
Tru1I TTAA 2 cut(s) 18, 51
Tru9I TTAA 2 cut(s) 18, 51
TscAI CASTG 2 cut(s) 42, 64
TseI GCWGC 4 cut(s) 83, 86, 210, 365
TspDTI ATGAA 2 cut(s) 135, 480
TspRI CASTG 2 cut(s) 42, 64
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 372
XmnI GAANNNNTTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.