Rmu_ssc0000100.1_g000020

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000100.1
OG0017826
Physical Location & Seq
Reverse (-)
72406 .. 76640
4235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000100.1_g000020.1.cds

Sequence Viewer

Length: 813 bp
atggtttccagagttgtggagagcctcaaggtatactacttaagctcctccgatttggtcaagctatcggagaagctatcacatgtgcagtccctttgcattcatgagatgatagtgcgagcttttaagcacatacttcaggcagtgattgctgctgttaataacactgagaaaatggctgcctcgattgctgctgcattgaatcttatgttgggggctccagaaaatgaagaattcaataagtctttcaatgtgcattcccttgtgtggagatggctggaagtattcttgcgaaagagatatggatgggatgttagcagcttcaactacaatgatgtgaagagatttgcgattctacgtggcctgtgtcataaggtgggcattgagatggttccacgagattttgatatggagtctccaaatccatttcagagttctgatattgtcagcttggttccagtacataagcaagctgcatgctcttcggcagatggtaggcaactattggagtcatcaaaaacagccttagataagggaaaacttgaagatgcagttgcatatggcactaaggttcttgcaaagctggtatcagtttgtggtccataccatcgaatgacagcaggagcttacagcctccttgctgtagttttatatcacactggagattttaatcagcgcaaggaacagatcgagtggaagcgctgttatggcaagtacaaacccctaaagaaaccgaggtcggcggaggttgaagccgagcaaaaggagctccaggaggctgtcaaaaatgcaagacaaagaggcttgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

270

Amino Acids

30.49

Weight (kDa)

9.23

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 743
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 122
AfaI GTAC 2 cut(s) 462, 716
AfeI AGCGCT 1 cut(s) 701
AfiI CCNNNNNNNGG 1 cut(s) 267
AflII CTTAAG 1 cut(s) 40
AflIII ACRYGT 1 cut(s) 82
AgsI TTSAA 7 cut(s) 202, 238, 250, 325, 545, 752, 808
AjnI CCWGG 1 cut(s) 771
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
Alw21I GWGCWC 1 cut(s) 771
Alw26I GTCTC 1 cut(s) 420
Aor51HI AGCGCT 1 cut(s) 701
AoxI GGCC 1 cut(s) 361
ApeKI GCWGC 6 cut(s) 152, 179, 191, 194, 318, 473
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 2 cut(s) 678, 702
AspS9I GGNCC 1 cut(s) 599
AvaII GGWCC 1 cut(s) 599
BanII GRGCYC 2 cut(s) 220, 771
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 771
BbvI GCAGC 6 cut(s) 139, 166, 178, 181, 330, 460
BccI CCATC 5 cut(s) 267, 300, 382, 485, 615
BcgI CGANNNNNNTGC 2 cut(s) 465, 499
BciT130I CCWGG 1 cut(s) 773
BcoDI GTCTC 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 642
BfoI RGCGCY 1 cut(s) 703
BfrI CTTAAG 1 cut(s) 40
BisI GCNGC 6 cut(s) 153, 180, 192, 195, 319, 474
BlsI GCNGC 6 cut(s) 154, 181, 193, 196, 320, 475
Bme1390I CCNGG 1 cut(s) 773
Bme18I GGWCC 1 cut(s) 599
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 3 cut(s) 219, 393, 456
BmrFI CCNGG 1 cut(s) 773
BmsI GCATC 1 cut(s) 538
BpmI CTGGAG 3 cut(s) 204, 681, 755
BpuEI CTTGAG 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 359
BsaBI GATNNNNATC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 734
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 2 cut(s) 458, 664
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 1 cut(s) 773
BseDI CCNNGG 1 cut(s) 734
BseGI GGATG 2 cut(s) 311, 316
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 458, 664
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 6 cut(s) 139, 166, 178, 181, 330, 460
BsgI GTGCAG 1 cut(s) 107
BshFI GGCC 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 771
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 420
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 2 cut(s) 99, 256
BsnI GGCC 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 220, 771
Bsp143I GATC 1 cut(s) 687
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 363
BspCNI CTCAG 1 cut(s) 160
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 3 cut(s) 219, 393, 456
BspQI GCTCTTC 1 cut(s) 487
BspTI CTTAAG 1 cut(s) 40
BsrI ACTGG 2 cut(s) 458, 664
BssECI CCNNGG 1 cut(s) 734
BssMI GATC 1 cut(s) 687
BssNAI GTATAC 1 cut(s) 34
BssSI CACGAG 1 cut(s) 396
Bst1107I GTATAC 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 773
Bst6I CTCTTC 2 cut(s) 335, 487
BstAFI CTTAAG 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 149
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 120, 471, 478
BstDEI CTNAG 3 cut(s) 168, 526, 567
BstF5I GGATG 2 cut(s) 311, 316
BstH2I RGCGCY 1 cut(s) 703
BstHHI GCGC 2 cut(s) 678, 702
BstKTI GATC 1 cut(s) 690
BstMAI GTCTC 1 cut(s) 420
BstMBI GATC 1 cut(s) 687
BstMWI GCNNNNNNNGC 4 cut(s) 149, 188, 708, 766
BstNI CCWGG 1 cut(s) 773
BstNSI RCATGY 2 cut(s) 86, 480
BstSCI CCNGG 1 cut(s) 771
BstSFI CTRYAG 1 cut(s) 642
BstV1I GCAGC 6 cut(s) 139, 166, 178, 181, 330, 460
BstXI CCANNNNNNTGG 1 cut(s) 16
BstZ17I GTATAC 1 cut(s) 34
BsuRI GGCC 1 cut(s) 363
BtsCI GGATG 2 cut(s) 311, 316
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 3 cut(s) 150, 165, 657
Cac8I GCNNGC 3 cut(s) 120, 471, 478
CciI TCATGA 1 cut(s) 103
CfoI GCGC 2 cut(s) 678, 702
Cfr13I GGNCC 1 cut(s) 599
Csp6I GTAC 2 cut(s) 461, 715
CviAII CATG 3 cut(s) 83, 104, 477
CviQI GTAC 2 cut(s) 461, 715
DdeI CTNAG 3 cut(s) 168, 526, 567
DpnI GATC 1 cut(s) 689
DpnII GATC 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 335, 487
EarI CTCTTC 2 cut(s) 335, 487
EciI GGCGGA 1 cut(s) 758
Ecl136II GAGCTC 1 cut(s) 769
Eco24I GRGCYC 2 cut(s) 220, 771
Eco47I GGWCC 1 cut(s) 599
Eco47III AGCGCT 1 cut(s) 701
Eco53kI GAGCTC 1 cut(s) 769
Eco57I CTGAAG 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 771
EcoT38I GRGCYC 2 cut(s) 220, 771
FaeI CATG 3 cut(s) 86, 107, 480
FaqI GGGAC 1 cut(s) 76
FatI CATG 3 cut(s) 82, 103, 476
FauNDI CATATG 1 cut(s) 559
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 6 cut(s) 153, 180, 192, 195, 319, 474
FokI GGATG 2 cut(s) 318, 323
FriOI GRGCYC 2 cut(s) 220, 771
Fsp4HI GCNGC 6 cut(s) 153, 180, 192, 195, 319, 474
GlaI GCGC 2 cut(s) 677, 701
GluI GCNGC 6 cut(s) 153, 180, 192, 195, 319, 474
GsuI CTGGAG 3 cut(s) 204, 681, 755
HaeII RGCGCY 1 cut(s) 703
HaeIII GGCC 1 cut(s) 363
HhaI GCGC 2 cut(s) 678, 702
Hin1II CATG 3 cut(s) 86, 107, 480
Hin6I GCGC 2 cut(s) 676, 700
HinP1I GCGC 2 cut(s) 676, 700
HinfI GANTC 4 cut(s) 202, 352, 413, 509
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 4 cut(s) 52, 70, 432, 439
Hpy188III TCNNGA 3 cut(s) 9, 104, 221
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 358
HpyCH4V TGCA 9 cut(s) 88, 99, 197, 256, 476, 551, 557, 578, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 188, 708, 766
HpyF3I CTNAG 3 cut(s) 168, 526, 567
HpySE526I ACGT 1 cut(s) 358
Hsp92II CATG 3 cut(s) 86, 107, 480
HspAI GCGC 2 cut(s) 676, 700
Kzo9I GATC 1 cut(s) 687
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 5 cut(s) 50, 223, 623, 766, 774
Lsp1109I GCAGC 6 cut(s) 139, 166, 178, 181, 330, 460
LweI GCATC 1 cut(s) 538
MaeII ACGT 1 cut(s) 358
MalI GATC 1 cut(s) 689
MboI GATC 1 cut(s) 687
MboII GAAGA 4 cut(s) 242, 352, 474, 557
MhlI GDGCHC 2 cut(s) 220, 771
MluCI AATT 2 cut(s) 233, 808
MlyI GAGTC 2 cut(s) 422, 518
MnlI CCTC 8 cut(s) 35, 58, 193, 644, 729, 739, 769, 794
MseI TTAA 4 cut(s) 41, 126, 159, 669
MslI CAYNNNNRTG 1 cut(s) 386
MspCI CTTAAG 1 cut(s) 40
MspR9I CCNGG 1 cut(s) 773
Mva1269I GAATGC 2 cut(s) 99, 256
MvaI CCWGG 1 cut(s) 773
MwoI GCNNNNNNNGC 4 cut(s) 149, 188, 708, 766
NdeI CATATG 1 cut(s) 559
NdeII GATC 1 cut(s) 687
NlaIII CATG 3 cut(s) 86, 107, 480
NlaIV GGNNCC 3 cut(s) 219, 393, 456
NmeAIII GCCGAG 1 cut(s) 781
NspI RCATGY 2 cut(s) 86, 480
PaeI GCATGC 1 cut(s) 480
PagI TCATGA 1 cut(s) 103
PciI ACATGT 1 cut(s) 82
PciSI GCTCTTC 1 cut(s) 487
PctI GAATGC 2 cut(s) 99, 256
PfeI GAWTC 2 cut(s) 202, 352
PfoI TCCNGGA 1 cut(s) 771
PkrI GCNGC 6 cut(s) 154, 181, 193, 196, 320, 475
PleI GAGTC 2 cut(s) 421, 517
PpsI GAGTC 2 cut(s) 421, 517
Ppu21I YACGTR 1 cut(s) 359
PscI ACATGT 1 cut(s) 82
Psp124BI GAGCTC 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 771
PspGI CCWGG 1 cut(s) 771
PspN4I GGNNCC 3 cut(s) 219, 393, 456
PspPI GGNCC 1 cut(s) 599
RsaI GTAC 2 cut(s) 462, 716
RsaNI GTAC 2 cut(s) 461, 715
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 1 cut(s) 771
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 4 cut(s) 41, 126, 159, 669
SatI GCNGC 6 cut(s) 153, 180, 192, 195, 319, 474
Sau3AI GATC 1 cut(s) 687
Sau96I GGNCC 1 cut(s) 599
SchI GAGTC 2 cut(s) 422, 518
ScrFI CCNGG 1 cut(s) 773
SduI GDGCHC 2 cut(s) 220, 771
SfaNI GCATC 1 cut(s) 538
SfcI CTRYAG 1 cut(s) 642
SinI GGWCC 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 26, 40
SmoI CTYRAG 2 cut(s) 26, 40
SphI GCATGC 1 cut(s) 480
Sse9I AATT 2 cut(s) 233, 808
SsiI CCGC 1 cut(s) 743
SstI GAGCTC 1 cut(s) 771
StyD4I CCNGG 1 cut(s) 771
TaiI ACGT 1 cut(s) 361
TaqI TCGA 3 cut(s) 185, 610, 690
TasI AATT 2 cut(s) 233, 808
TatI WGTACW 2 cut(s) 460, 714
TfiI GAWTC 2 cut(s) 202, 352
Tru1I TTAA 4 cut(s) 41, 126, 159, 669
Tru9I TTAA 4 cut(s) 41, 126, 159, 669
TscAI CASTG 3 cut(s) 150, 172, 664
TseI GCWGC 6 cut(s) 152, 179, 191, 194, 318, 473
TspDTI ATGAA 2 cut(s) 92, 243
TspRI CASTG 3 cut(s) 150, 172, 664
Vha464I CTTAAG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 1 cut(s) 233
XceI RCATGY 2 cut(s) 86, 480
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.