Rw4G009100

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0017826
Physical Location & Seq
Forward (+)
20362766 .. 20364258
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009100.1

Sequence Viewer

Length: 633 bp
ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATAATTGGGTTTTTGGTGGTGCTGTGGCGGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCTGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCGTCAGGCAAGACTAGGGTCAAGCTATTGGAGAAGCTATCACATGTGCAGTCCCTTTGCATTCATGAGATGATAGTGCGAGCTTTTAAGCACATACTTCAGGCAGTGATTGCTGCTGTTAATAACACTGAGAAAATGGCTGCCTCGATTGCTGCTGCATTGAATCTTATGTTGGGGGCTCCAGAAAATGAAGAATTCAATAAGTCTTTCAATGTGCATTCCCTTGTGTGGAGATGGCTGGAAGTATTCTTGCGAAAGAGATATGGATGGGATGTTTGCAGCTTCAACTACAATGATGTGAGGAGATTTGCGATTCTAGGTGGCCTGTGTCATAAGGTGGGCATTGAGATGGTTCCACGAGATTTTGATATGGAGTCTCCAAATCCATTTCAGAGTTCTGATATTGTCAGCTTAGTTCCAATACATAAGCAAGCTGCATGCTCTTCGGCAGATGGTAGGAACTATTGGAGTCATCAAAAACAGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

210

Amino Acids

23.8

Weight (kDa)

8.35

Isoelectric Point (pI)

66.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
eIF3_p135 PF12807 48 - 171 3.4e-13 Translation initiation factor eIF3 subunit 135
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 64, 113
AcsI RAATTY 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 372
AflII CTTAAG 1 cut(s) 116
AflIII ACRYGT 1 cut(s) 187
AgsI TTSAA 5 cut(s) 27, 307, 343, 355, 430
AhlI ACTAGT 1 cut(s) 83
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 7 cut(s) 103, 169, 181, 227, 426, 555, 578
AluI AGCT 7 cut(s) 103, 169, 181, 227, 426, 555, 578
Alw26I GTCTC 1 cut(s) 525
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 7 cut(s) 100, 257, 284, 296, 299, 423, 578
ApoI RAATTY 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 22, 106
BanII GRGCYC 1 cut(s) 325
BauI CACGAG 1 cut(s) 501
BbvI GCAGC 7 cut(s) 112, 244, 271, 283, 286, 435, 565
BccI CCATC 4 cut(s) 372, 405, 487, 590
BcgI CGANNNNNNTGC 2 cut(s) 570, 604
BcoDI GTCTC 1 cut(s) 525
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 3 cut(s) 84, 159, 461
BfrI CTTAAG 1 cut(s) 116
BisI GCNGC 8 cut(s) 101, 113, 258, 285, 297, 300, 424, 579
BlsI GCNGC 8 cut(s) 102, 114, 259, 286, 298, 301, 425, 580
BmiI GGNNCC 2 cut(s) 324, 498
BoxI GACNNNNGTC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 372
BseGI GGATG 2 cut(s) 416, 421
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 264
BseRI GAGGAG 2 cut(s) 137, 460
BseXI GCAGC 7 cut(s) 112, 244, 271, 283, 286, 435, 565
BsgI GTGCAG 1 cut(s) 212
BshFI GGCC 1 cut(s) 468
BslFI GGGAC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 2 cut(s) 204, 361
BsnI GGCC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 3 cut(s) 5, 64, 113
BspANI GGCC 1 cut(s) 468
BspCNI CTCAG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 324, 498
BspQI GCTCTTC 1 cut(s) 592
BspTI CTTAAG 1 cut(s) 116
BssMI GATC 1 cut(s) 68
BssSI CACGAG 1 cut(s) 501
Bst2BI CACGAG 1 cut(s) 501
Bst6I CTCTTC 1 cut(s) 592
BstAFI CTTAAG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 4 cut(s) 105, 225, 576, 583
BstDEI CTNAG 3 cut(s) 273, 556, 630
BstF5I GGATG 2 cut(s) 416, 421
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 525
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 3 cut(s) 109, 254, 293
BstNSI RCATGY 2 cut(s) 191, 585
BstPAI GACNNNNGTC 1 cut(s) 161
BstV1I GCAGC 7 cut(s) 112, 244, 271, 283, 286, 435, 565
BsuRI GGCC 1 cut(s) 468
BtsCI GGATG 2 cut(s) 416, 421
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 270
Cac8I GCNNGC 4 cut(s) 105, 225, 576, 583
CciI TCATGA 1 cut(s) 208
CseI GACGC 1 cut(s) 135
CviAII CATG 3 cut(s) 188, 209, 582
DdeI CTNAG 3 cut(s) 273, 556, 630
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Eam1104I CTCTTC 1 cut(s) 592
EarI CTCTTC 1 cut(s) 592
EciI GGCGGA 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 325
FaeI CATG 3 cut(s) 191, 212, 585
FaiI YATR 9 cut(s) 189, 210, 239, 314, 408, 477, 515, 570, 583
FaqI GGGAC 1 cut(s) 181
FatI CATG 3 cut(s) 187, 208, 581
Fnu4HI GCNGC 8 cut(s) 101, 113, 258, 285, 297, 300, 424, 579
FokI GGATG 2 cut(s) 423, 428
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 8 cut(s) 101, 113, 258, 285, 297, 300, 424, 579
FspBI CTAG 3 cut(s) 84, 159, 461
GluI GCNGC 8 cut(s) 101, 113, 258, 285, 297, 300, 424, 579
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 468
HgaI GACGC 1 cut(s) 135
Hin1II CATG 3 cut(s) 191, 212, 585
HinfI GANTC 4 cut(s) 307, 457, 518, 613
HphI GGTGA 2 cut(s) 22, 106
Hpy188I TCNGA 3 cut(s) 76, 537, 544
Hpy188III TCNNGA 2 cut(s) 209, 326
Hpy99I CGWCG 1 cut(s) 22
HpyCH4V TGCA 6 cut(s) 193, 204, 302, 361, 423, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 254, 293
HpyF3I CTNAG 3 cut(s) 273, 556, 630
Hsp92II CATG 3 cut(s) 191, 212, 585
Kzo9I GATC 1 cut(s) 68
LguI GCTCTTC 1 cut(s) 592
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 6 cut(s) 89, 135, 230, 339, 368, 482
Lsp1109I GCAGC 7 cut(s) 112, 244, 271, 283, 286, 435, 565
MaeI CTAG 3 cut(s) 84, 159, 461
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MboII GAAGA 3 cut(s) 140, 347, 579
MfeI CAATTG 1 cut(s) 27
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 3 cut(s) 27, 39, 338
MlyI GAGTC 2 cut(s) 527, 622
MnlI CCTC 5 cut(s) 115, 118, 133, 298, 438
MseI TTAA 3 cut(s) 117, 231, 264
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 103
MspCI CTTAAG 1 cut(s) 116
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 2 cut(s) 204, 361
MwoI GCNNNNNNNGC 3 cut(s) 109, 254, 293
NdeII GATC 1 cut(s) 68
NlaIII CATG 3 cut(s) 191, 212, 585
NlaIV GGNNCC 2 cut(s) 324, 498
NspI RCATGY 2 cut(s) 191, 585
PaeI GCATGC 1 cut(s) 585
PagI TCATGA 1 cut(s) 208
PciI ACATGT 1 cut(s) 187
PciSI GCTCTTC 1 cut(s) 592
PctI GAATGC 2 cut(s) 204, 361
PfeI GAWTC 2 cut(s) 307, 457
PkrI GCNGC 8 cut(s) 102, 114, 259, 286, 298, 301, 425, 580
PleI GAGTC 2 cut(s) 526, 621
PpsI GAGTC 2 cut(s) 526, 621
PscI ACATGT 1 cut(s) 187
PshAI GACNNNNGTC 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 324, 498
PvuII CAGCTG 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 592
SaqAI TTAA 3 cut(s) 117, 231, 264
SatI GCNGC 8 cut(s) 101, 113, 258, 285, 297, 300, 424, 579
Sau3AI GATC 1 cut(s) 68
SchI GAGTC 2 cut(s) 527, 622
SduI GDGCHC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 83
SphI GCATGC 1 cut(s) 585
Sse9I AATT 3 cut(s) 27, 39, 338
SsiI CCGC 3 cut(s) 5, 64, 113
SspMI CTAG 3 cut(s) 84, 159, 461
TaqI TCGA 1 cut(s) 290
TasI AATT 3 cut(s) 27, 39, 338
TauI GCSGC 1 cut(s) 115
TfiI GAWTC 2 cut(s) 307, 457
Tru1I TTAA 3 cut(s) 117, 231, 264
Tru9I TTAA 3 cut(s) 117, 231, 264
TscAI CASTG 2 cut(s) 255, 277
TseI GCWGC 7 cut(s) 100, 257, 284, 296, 299, 423, 578
TspDTI ATGAA 2 cut(s) 197, 348
TspRI CASTG 2 cut(s) 255, 277
Vha464I CTTAAG 1 cut(s) 116
XapI RAATTY 1 cut(s) 338
XceI RCATGY 2 cut(s) 191, 585
XspI CTAG 3 cut(s) 84, 159, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.