Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033684.1

Orthogroup ID

OG0019336

Physical Location & Seq

Genomic Coordinates Forward (+)

4537 .. 5462

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033684.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggaatccggggcattggttttattgcaagacatacatccattttcaccacactttaagcaaggggcttcgctaagagtaactggaaagttacaagagtattctgttgagacagctattgccactgtagttgatggaaatgacagcttaaagaccgacaccaagctcctcagggagcttaacattctggttggatccatgaaccagttcatcggtgaactgcatattcaatccaataatggggcagtcttgcaggcatgtgtgggtaggaaaatggatggcattgacctcaagctcgatctattaccagtctccacacatgttaagacaattccaaggcaattatctgaagaacccaacggcttaacagctcttgaaagttatcctgcggagcagcattctcctccagagcattattgtcgtccagaacagtgctctactccacaacagcaacaaattgattctgatcctttttcttcagattatgaggggagctttatggaccgtaccggtttttcagagctcagtggttctgatgatgaggtagttgatggtttcactaaatgctttctttgtcgtatggaattttatatcttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000723 GO:0000781 GO:0003674 GO:0004857 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006457 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010521 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0019827 GO:0030234 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032200 GO:0032501 GO:0032502 GO:0034641 GO:0042592 GO:0043086 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044092 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045934 GO:0046483 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051338 GO:0051348 GO:0051972 GO:0051974 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098687 GO:0098727 GO:0098772 GO:1901360 GO:2000112 GO:2000113 GO:2000278 GO:2000279

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ten1_2

Protein Analysis

199

Amino Acids

22.1

Weight (kDa)

4.68

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019336)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321571 RchiOBHm_Chr1g0328931 RchiOBHm_Chr2g0172481
rosa_multiflora	Rmu_sc0003413.1_g000021 Rmu_sc0033684.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115020
rosa_samantha	Rh1AG052900 Rh3AG281200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	3 cut(s)	189, 202, 461
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	2 cut(s)	369, 462
AfaI	GTAC	1 cut(s)	508
AfiI	CCNNNNNNNGG	1 cut(s)	240
AflIII	ACRYGT	1 cut(s)	319
AgeI	ACCGGT	1 cut(s)	509
AgsI	TTSAA	2 cut(s)	230, 377
AluBI	AGCT	8 cut(s)	116, 147, 166, 178, 295, 371, 495, 523
AluI	AGCT	8 cut(s)	116, 147, 166, 178, 295, 371, 495, 523
Alw21I	GWGCWC	2 cut(s)	437, 525
Alw26I	GTCTC	2 cut(s)	104, 316
AlwI	GGATC	3 cut(s)	189, 202, 461
ApeKI	GCWGC	1 cut(s)	394
ApoI	RAATTY	1 cut(s)	584
AsiGI	ACCGGT	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	502
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	39, 227
AvaII	GGWCC	1 cut(s)	502
AxyI	CCTNAGG	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	437, 525
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	3 cut(s)	128, 272, 545
BceAI	ACGGC	1 cut(s)	376
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	2 cut(s)	104, 316
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	395
BlsI	GCNGC	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	10
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	465
BsaJI	CCNNGG	2 cut(s)	9, 335
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	3 cut(s)	88, 205, 308
Bse21I	CCTNAGG	1 cut(s)	170
Bse8I	GATNNNNATC	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	9, 335
BseGI	GGATG	2 cut(s)	37, 283
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	184, 538
BseNI	ACTGG	3 cut(s)	88, 205, 308
BseRI	GAGGAG	2 cut(s)	158, 393
BseXI	GCAGC	1 cut(s)	406
BshTI	ACCGGT	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	437, 525
BsiSI	CCGG	2 cut(s)	9, 510
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	2 cut(s)	104, 316
BsmI	GAATGC	1 cut(s)	397
Bsp1286I	GDGCHC	2 cut(s)	437, 525
Bsp143I	GATC	3 cut(s)	194, 298, 466
BspACI	CCGC	1 cut(s)	389
BspCNI	CTCAG	2 cut(s)	183, 537
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	3 cut(s)	189, 202, 461
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	3 cut(s)	88, 205, 308
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	9, 335
BssMI	GATC	3 cut(s)	194, 298, 466
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	3 cut(s)	127, 432, 506
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	3 cut(s)	74, 170, 524
BstF5I	GGATG	2 cut(s)	37, 283
BstKTI	GATC	3 cut(s)	197, 301, 469
BstMAI	GTCTC	2 cut(s)	104, 316
BstMBI	GATC	3 cut(s)	194, 298, 466
BstNSI	RCATGY	2 cut(s)	261, 323
BstSCI	CCNGG	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	37, 283
BtsIMutI	CAGTG	3 cut(s)	123, 437, 532
Cac8I	GCNNGC	1 cut(s)	255
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	507
CspAI	ACCGGT	1 cut(s)	509
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	3 cut(s)	199, 258, 320
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	3 cut(s)	74, 170, 524
DpnI	GATC	3 cut(s)	196, 300, 468
DpnII	GATC	3 cut(s)	194, 298, 466
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	502
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	2 cut(s)	369, 462
Eco81I	CCTNAGG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	3 cut(s)	202, 261, 323
FaiI	YATR	9 cut(s)	35, 200, 225, 259, 321, 486, 500, 581, 591
FatI	CATG	3 cut(s)	198, 257, 319
Fnu4HI	GCNGC	1 cut(s)	395
FokI	GGATG	2 cut(s)	24, 290
FriOI	GRGCYC	1 cut(s)	525
Fsp4HI	GCNGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	390
HapII	CCGG	2 cut(s)	9, 510
Hin1II	CATG	3 cut(s)	202, 261, 323
HinfI	GANTC	2 cut(s)	5, 461
HpaII	CCGG	2 cut(s)	9, 510
HphI	GGTGA	2 cut(s)	39, 227
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	5 cut(s)	349, 466, 481, 520, 535
Hpy188III	TCNNGA	3 cut(s)	374, 407, 425
Hpy8I	GTNNAC	1 cut(s)	218
HpyCH4III	ACNGT	3 cut(s)	127, 432, 506
HpyCH4V	TGCA	3 cut(s)	28, 223, 253
HpyF3I	CTNAG	3 cut(s)	74, 170, 524
Hsp92II	CATG	3 cut(s)	202, 261, 323
Kzo9I	GATC	3 cut(s)	194, 298, 466
LmnI	GCTCC	4 cut(s)	171, 175, 391, 492
Lsp1109I	GCAGC	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	79, 90
MalI	GATC	3 cut(s)	196, 300, 468
MboI	GATC	3 cut(s)	194, 298, 466
MboII	GAAGA	3 cut(s)	362, 468, 586
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	437, 525
MluCI	AATT	4 cut(s)	330, 341, 456, 584
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	179, 299, 414, 481, 535
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	5 cut(s)	57, 149, 180, 324, 365
MspI	CCGG	2 cut(s)	9, 510
MspR9I	CCNGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	194, 298, 466
NlaIII	CATG	3 cut(s)	202, 261, 323
NlaIV	GGNNCC	1 cut(s)	196
NspI	RCATGY	2 cut(s)	261, 323
PciI	ACATGT	1 cut(s)	319
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	2 cut(s)	5, 461
PinAI	ACCGGT	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	396
PscI	ACATGT	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	525
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	525
SaqAI	TTAA	5 cut(s)	57, 149, 180, 324, 365
SatI	GCNGC	1 cut(s)	395
Sau3AI	GATC	3 cut(s)	194, 298, 466
Sau96I	GGNCC	1 cut(s)	502
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	2 cut(s)	437, 525
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	330, 341, 456, 584
SsiI	CCGC	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	3 cut(s)	127, 432, 506
TaqI	TCGA	1 cut(s)	297
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	4 cut(s)	330, 341, 456, 584
TfiI	GAWTC	2 cut(s)	5, 461
Tru1I	TTAA	5 cut(s)	57, 149, 180, 324, 365
Tru9I	TTAA	5 cut(s)	57, 149, 180, 324, 365
TscAI	CASTG	3 cut(s)	130, 437, 532
TseI	GCWGC	1 cut(s)	394
TspDTI	ATGAA	2 cut(s)	199, 215
TspRI	CASTG	3 cut(s)	130, 437, 532
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	2 cut(s)	261, 323
XmnI	GAANNNNTTC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.