DNA (cytosine-5)-methyltransferase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0321571 RchiOBHm_Chr1g0328931 RchiOBHm_Chr2g0172481 |
| rosa_multiflora | Rmu_sc0003413.1_g000021 Rmu_sc0033684.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00115020 |
| rosa_samantha | Rh1AG052900 Rh3AG281200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 213 |
| AgeI | ACCGGT | 1 cut(s) | 28 |
| AgsI | TTSAA | 1 cut(s) | 380 |
| AluBI | AGCT | 1 cut(s) | 276 |
| AluI | AGCT | 1 cut(s) | 276 |
| Alw21I | GWGCWC | 1 cut(s) | 188 |
| ApeKI | GCWGC | 1 cut(s) | 52 |
| AsiGI | ACCGGT | 1 cut(s) | 28 |
| AsuHPI | GGTGA | 3 cut(s) | 36, 43, 124 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 96, 129 |
| BbsI | GAAGAC | 1 cut(s) | 2 |
| Bbv12I | GWGCWC | 1 cut(s) | 188 |
| BbvI | GCAGC | 1 cut(s) | 64 |
| BccI | CCATC | 2 cut(s) | 248, 324 |
| BceAI | ACGGC | 1 cut(s) | 21 |
| BciVI | GTATCC | 1 cut(s) | 97 |
| BfuI | GTATCC | 1 cut(s) | 97 |
| BglII | AGATCT | 1 cut(s) | 265 |
| BisI | GCNGC | 1 cut(s) | 53 |
| BlsI | GCNGC | 1 cut(s) | 54 |
| BpiI | GAAGAC | 1 cut(s) | 2 |
| BsaJI | CCNNGG | 2 cut(s) | 87, 343 |
| BsaWI | WCCGGW | 1 cut(s) | 28 |
| Bse118I | RCCGGY | 1 cut(s) | 28 |
| Bse3DI | GCAATG | 1 cut(s) | 124 |
| BseDI | CCNNGG | 2 cut(s) | 87, 343 |
| BseGI | GGATG | 1 cut(s) | 259 |
| BseMI | GCAATG | 1 cut(s) | 124 |
| BseMII | CTCAG | 1 cut(s) | 311 |
| BseRI | GAGGAG | 2 cut(s) | 139, 337 |
| BseXI | GCAGC | 1 cut(s) | 64 |
| BshTI | ACCGGT | 1 cut(s) | 28 |
| BsiHKAI | GWGCWC | 1 cut(s) | 188 |
| BsiSI | CCGG | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 1 cut(s) | 188 |
| Bsp143I | GATC | 2 cut(s) | 64, 265 |
| BspCNI | CTCAG | 1 cut(s) | 312 |
| BsrDI | GCAATG | 1 cut(s) | 124 |
| BsrFI | RCCGGY | 1 cut(s) | 28 |
| BssAI | RCCGGY | 1 cut(s) | 28 |
| BssECI | CCNNGG | 2 cut(s) | 87, 343 |
| BssMI | GATC | 2 cut(s) | 64, 265 |
| BssT1I | CCWWGG | 2 cut(s) | 87, 343 |
| Bst4CI | ACNGT | 1 cut(s) | 384 |
| Bst6I | CTCTTC | 2 cut(s) | 158, 195 |
| BstDEI | CTNAG | 2 cut(s) | 237, 320 |
| BstF5I | GGATG | 1 cut(s) | 259 |
| BstKTI | GATC | 2 cut(s) | 67, 268 |
| BstMBI | GATC | 2 cut(s) | 64, 265 |
| BstV1I | GCAGC | 1 cut(s) | 64 |
| BstV2I | GAAGAC | 1 cut(s) | 2 |
| BstX2I | RGATCY | 1 cut(s) | 265 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 94 |
| BstYI | RGATCY | 1 cut(s) | 265 |
| BsuI | GTATCC | 1 cut(s) | 97 |
| BtsCI | GGATG | 1 cut(s) | 259 |
| BtsI | GCAGTG | 2 cut(s) | 99, 188 |
| BtsIMutI | CAGTG | 2 cut(s) | 99, 188 |
| Cfr10I | RCCGGY | 1 cut(s) | 28 |
| CspAI | ACCGGT | 1 cut(s) | 28 |
| CviAII | CATG | 1 cut(s) | 177 |
| CviJI | RGCY | 3 cut(s) | 36, 276, 376 |
| CviKI_1 | RGCY | 3 cut(s) | 36, 276, 376 |
| DdeI | CTNAG | 2 cut(s) | 237, 320 |
| DpnI | GATC | 2 cut(s) | 66, 267 |
| DpnII | GATC | 2 cut(s) | 64, 265 |
| Eam1104I | CTCTTC | 2 cut(s) | 158, 195 |
| EarI | CTCTTC | 2 cut(s) | 158, 195 |
| Eco130I | CCWWGG | 2 cut(s) | 87, 343 |
| Eco57I | CTGAAG | 1 cut(s) | 213 |
| EcoT14I | CCWWGG | 2 cut(s) | 87, 343 |
| ErhI | CCWWGG | 2 cut(s) | 87, 343 |
| FaeI | CATG | 1 cut(s) | 180 |
| FaiI | YATR | 3 cut(s) | 178, 306, 339 |
| FatI | CATG | 1 cut(s) | 176 |
| Fnu4HI | GCNGC | 1 cut(s) | 53 |
| FokI | GGATG | 1 cut(s) | 266 |
| Fsp4HI | GCNGC | 1 cut(s) | 53 |
| GluI | GCNGC | 1 cut(s) | 53 |
| HapII | CCGG | 1 cut(s) | 29 |
| Hin1II | CATG | 1 cut(s) | 180 |
| HinfI | GANTC | 2 cut(s) | 212, 233 |
| HpaII | CCGG | 1 cut(s) | 29 |
| HphI | GGTGA | 3 cut(s) | 36, 43, 124 |
| Hpy188I | TCNGA | 6 cut(s) | 69, 217, 232, 280, 313, 321 |
| Hpy188III | TCNNGA | 3 cut(s) | 194, 251, 269 |
| HpyAV | CCTTC | 1 cut(s) | 12 |
| HpyCH4III | ACNGT | 1 cut(s) | 384 |
| HpyCH4IV | ACGT | 1 cut(s) | 144 |
| HpyF3I | CTNAG | 2 cut(s) | 237, 320 |
| HpySE526I | ACGT | 1 cut(s) | 144 |
| Hsp92II | CATG | 1 cut(s) | 180 |
| Kzo9I | GATC | 2 cut(s) | 64, 265 |
| LmnI | GCTCC | 2 cut(s) | 243, 324 |
| LpnPI | CCDG | 5 cut(s) | 42, 60, 175, 207, 236 |
| Lsp1109I | GCAGC | 1 cut(s) | 64 |
| MaeII | ACGT | 1 cut(s) | 144 |
| MaeIII | GTNAC | 2 cut(s) | 42, 73 |
| MalI | GATC | 2 cut(s) | 66, 267 |
| MboI | GATC | 2 cut(s) | 64, 265 |
| MboII | GAAGA | 5 cut(s) | 125, 145, 182, 219, 299 |
| MflI | RGATCY | 1 cut(s) | 265 |
| MhlI | GDGCHC | 1 cut(s) | 188 |
| MluCI | AATT | 1 cut(s) | 207 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MnlI | CCTC | 3 cut(s) | 117, 315, 366 |
| MseI | TTAA | 1 cut(s) | 360 |
| MslI | CAYNNNNRTG | 1 cut(s) | 181 |
| MspI | CCGG | 1 cut(s) | 29 |
| NdeII | GATC | 2 cut(s) | 64, 265 |
| NlaIII | CATG | 1 cut(s) | 180 |
| NmuCI | GTSAC | 1 cut(s) | 42 |
| PfeI | GAWTC | 1 cut(s) | 233 |
| PinAI | ACCGGT | 1 cut(s) | 28 |
| PkrI | GCNGC | 1 cut(s) | 54 |
| PleI | GAGTC | 1 cut(s) | 206 |
| PpsI | GAGTC | 1 cut(s) | 206 |
| PsuI | RGATCY | 1 cut(s) | 265 |
| RseI | CAYNNNNRTG | 1 cut(s) | 181 |
| SaqAI | TTAA | 1 cut(s) | 360 |
| SatI | GCNGC | 1 cut(s) | 53 |
| Sau3AI | GATC | 2 cut(s) | 64, 265 |
| SchI | GAGTC | 1 cut(s) | 206 |
| SduI | GDGCHC | 1 cut(s) | 188 |
| SetI | ASST | 2 cut(s) | 147, 278 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 181 |
| Sse9I | AATT | 1 cut(s) | 207 |
| StyI | CCWWGG | 2 cut(s) | 87, 343 |
| TaaI | ACNGT | 1 cut(s) | 384 |
| TaiI | ACGT | 1 cut(s) | 147 |
| TasI | AATT | 1 cut(s) | 207 |
| TfiI | GAWTC | 1 cut(s) | 233 |
| Tru1I | TTAA | 1 cut(s) | 360 |
| Tru9I | TTAA | 1 cut(s) | 360 |
| TscAI | CASTG | 2 cut(s) | 99, 188 |
| TseFI | GTSAC | 1 cut(s) | 42 |
| TseI | GCWGC | 1 cut(s) | 52 |
| Tsp45I | GTSAC | 1 cut(s) | 42 |
| TspDTI | ATGAA | 1 cut(s) | 300 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| TspRI | CASTG | 2 cut(s) | 99, 188 |