DNA (cytosine-5)-methyltransferase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0321571 RchiOBHm_Chr1g0328931 RchiOBHm_Chr2g0172481 |
| rosa_multiflora | Rmu_sc0003413.1_g000021 Rmu_sc0033684.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00115020 |
| rosa_samantha | Rh1AG052900 Rh3AG281200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 110 |
| AgsI | TTSAA | 2 cut(s) | 26, 129 |
| AluBI | AGCT | 2 cut(s) | 166, 174 |
| AluI | AGCT | 2 cut(s) | 166, 174 |
| Alw21I | GWGCWC | 2 cut(s) | 86, 168 |
| Alw26I | GTCTC | 1 cut(s) | 203 |
| AlwI | GGATC | 1 cut(s) | 110 |
| ApeKI | GCWGC | 1 cut(s) | 43 |
| BanII | GRGCYC | 1 cut(s) | 168 |
| Bbv12I | GWGCWC | 2 cut(s) | 86, 168 |
| BbvI | GCAGC | 1 cut(s) | 55 |
| BccI | CCATC | 1 cut(s) | 188 |
| BcoDI | GTCTC | 1 cut(s) | 203 |
| BisI | GCNGC | 1 cut(s) | 44 |
| BlsI | GCNGC | 1 cut(s) | 45 |
| BmsI | GCATC | 1 cut(s) | 245 |
| BpmI | CTGGAG | 1 cut(s) | 39 |
| Bsa29I | ATCGAT | 1 cut(s) | 108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 114 |
| BsaI | GGTCTC | 1 cut(s) | 203 |
| Bse8I | GATNNNNATC | 1 cut(s) | 114 |
| BseCI | ATCGAT | 1 cut(s) | 108 |
| BseJI | GATNNNNATC | 1 cut(s) | 114 |
| BseMII | CTCAG | 1 cut(s) | 181 |
| BseRI | GAGGAG | 1 cut(s) | 42 |
| BseXI | GCAGC | 1 cut(s) | 55 |
| BshVI | ATCGAT | 1 cut(s) | 108 |
| BsiHKAI | GWGCWC | 2 cut(s) | 86, 168 |
| BsmAI | GTCTC | 1 cut(s) | 203 |
| BsmI | GAATGC | 1 cut(s) | 46 |
| Bso31I | GGTCTC | 1 cut(s) | 203 |
| Bsp1286I | GDGCHC | 2 cut(s) | 86, 168 |
| Bsp143I | GATC | 1 cut(s) | 115 |
| BspCNI | CTCAG | 1 cut(s) | 180 |
| BspDI | ATCGAT | 1 cut(s) | 108 |
| BspPI | GGATC | 1 cut(s) | 110 |
| BspTNI | GGTCTC | 1 cut(s) | 203 |
| BssMI | GATC | 1 cut(s) | 115 |
| Bst4CI | ACNGT | 2 cut(s) | 81, 155 |
| BstDEI | CTNAG | 1 cut(s) | 167 |
| BstKTI | GATC | 1 cut(s) | 118 |
| BstMAI | GTCTC | 1 cut(s) | 203 |
| BstMBI | GATC | 1 cut(s) | 115 |
| BstV1I | GCAGC | 1 cut(s) | 55 |
| Bsu15I | ATCGAT | 1 cut(s) | 108 |
| BsuTUI | ATCGAT | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 2 cut(s) | 86, 246 |
| ClaI | ATCGAT | 1 cut(s) | 108 |
| CviAII | CATG | 1 cut(s) | 267 |
| CviJI | RGCY | 5 cut(s) | 20, 166, 174, 210, 263 |
| CviKI_1 | RGCY | 5 cut(s) | 20, 166, 174, 210, 263 |
| DdeI | CTNAG | 1 cut(s) | 167 |
| DpnI | GATC | 1 cut(s) | 117 |
| DpnII | GATC | 1 cut(s) | 115 |
| Ecl136II | GAGCTC | 1 cut(s) | 166 |
| Eco24I | GRGCYC | 1 cut(s) | 168 |
| Eco31I | GGTCTC | 1 cut(s) | 203 |
| Eco53kI | GAGCTC | 1 cut(s) | 166 |
| EcoICRI | GAGCTC | 1 cut(s) | 166 |
| EcoT38I | GRGCYC | 1 cut(s) | 168 |
| FaeI | CATG | 1 cut(s) | 270 |
| FaiI | YATR | 5 cut(s) | 135, 149, 224, 234, 268 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 198, 230 |
| FatI | CATG | 1 cut(s) | 266 |
| Fnu4HI | GCNGC | 1 cut(s) | 44 |
| FriOI | GRGCYC | 1 cut(s) | 168 |
| Fsp4HI | GCNGC | 1 cut(s) | 44 |
| GluI | GCNGC | 1 cut(s) | 44 |
| GsuI | CTGGAG | 1 cut(s) | 39 |
| Hin1II | CATG | 1 cut(s) | 270 |
| HinfI | GANTC | 2 cut(s) | 5, 110 |
| Hpy188I | TCNGA | 3 cut(s) | 115, 163, 178 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 56, 74 |
| HpyCH4III | ACNGT | 2 cut(s) | 81, 155 |
| HpyF3I | CTNAG | 1 cut(s) | 167 |
| Hsp92II | CATG | 1 cut(s) | 270 |
| Kzo9I | GATC | 1 cut(s) | 115 |
| LmnI | GCTCC | 2 cut(s) | 40, 141 |
| LpnPI | CCDG | 2 cut(s) | 69, 87 |
| Lsp1109I | GCAGC | 1 cut(s) | 55 |
| LweI | GCATC | 1 cut(s) | 245 |
| MalI | GATC | 1 cut(s) | 117 |
| MboI | GATC | 1 cut(s) | 115 |
| MboII | GAAGA | 2 cut(s) | 117, 229 |
| MhlI | GDGCHC | 2 cut(s) | 86, 168 |
| MluCI | AATT | 1 cut(s) | 130 |
| MnlI | CCTC | 3 cut(s) | 63, 130, 178 |
| Mva1269I | GAATGC | 1 cut(s) | 46 |
| NdeII | GATC | 1 cut(s) | 115 |
| NlaIII | CATG | 1 cut(s) | 270 |
| PctI | GAATGC | 1 cut(s) | 46 |
| PfeI | GAWTC | 2 cut(s) | 5, 110 |
| PkrI | GCNGC | 1 cut(s) | 45 |
| Psp124BI | GAGCTC | 1 cut(s) | 168 |
| SacI | GAGCTC | 1 cut(s) | 168 |
| SatI | GCNGC | 1 cut(s) | 44 |
| Sau3AI | GATC | 1 cut(s) | 115 |
| SduI | GDGCHC | 2 cut(s) | 86, 168 |
| SetI | ASST | 3 cut(s) | 168, 176, 189 |
| SfaNI | GCATC | 1 cut(s) | 245 |
| SgeI | CNNG | 4 cut(s) | 21, 35, 68, 86 |
| Sse9I | AATT | 1 cut(s) | 130 |
| SstI | GAGCTC | 1 cut(s) | 168 |
| TaaI | ACNGT | 2 cut(s) | 81, 155 |
| TaqI | TCGA | 1 cut(s) | 108 |
| TasI | AATT | 1 cut(s) | 130 |
| TfiI | GAWTC | 2 cut(s) | 5, 110 |
| TscAI | CASTG | 2 cut(s) | 86, 253 |
| TseI | GCWGC | 1 cut(s) | 43 |
| TspGWI | ACGGA | 1 cut(s) | 53 |
| TspRI | CASTG | 2 cut(s) | 86, 253 |