Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0019336

Physical Location & Seq

Genomic Coordinates Reverse (-)

8849088 .. 8863697

Gene Structure 14610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGGTGAAGAAAATTGCTACTAAATTGAATGGAGCCATGGAGGATGGAAATACATCTCGGGTAGATGGTGATGATGTTGACCGGGATACCGATGATGAGCTTGAGATTGAAAACTTCACTTTATCTTCTTCAGCTAATCCAGGCTCTGGGGAGGCTCTTGAAGGTAGTCCTCCGGAGCAACATTCTCTGCCAGAGCTGCATTCTCATCCAGAACAGTGCTCTCCTCAAGCACAGCAACAAATTGACTCGGATCTCTTTTCTTCAGATTATGATGGGAGCTTGTTAGATAGTTTTTCAGATCTCGATAGCTCTGATGATGAGGTAACCATCGATCCTACATCTAAGGCGGAGACAAAACTTATGTCCCTGGTATTGACTCGTCACTTGTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

132

Amino Acids

14.39

Weight (kDa)

4.05

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019336)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0321571 RchiOBHm_Chr1g0328931 RchiOBHm_Chr2g0172481
rosa_multiflora	Rmu_sc0003413.1_g000021 Rmu_sc0033684.1_g000002
rosa_roxburghii	Rroxscaffold_2G00115020
rosa_samantha	Rh1AG052900 Rh3AG281200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	175
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	2 cut(s)	261, 329
AcuI	CTGAAG	2 cut(s)	117, 249
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	3 cut(s)	31, 113, 164
AjnI	CCWGG	2 cut(s)	142, 369
AluBI	AGCT	5 cut(s)	103, 137, 199, 282, 312
AluI	AGCT	5 cut(s)	103, 137, 199, 282, 312
Alw21I	GWGCWC	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	2 cut(s)	261, 329
AlwNI	CAGNNNCTG	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	60
Aor13HI	TCCGGA	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	199
ArsI	GACNNNNNNTTYG	2 cut(s)	350, 382
AsuC2I	CCSGG	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	19, 83
AvaI	CYCGRG	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	4 cut(s)	41, 62, 269, 338
BciT130I	CCWGG	2 cut(s)	144, 371
BciVI	GTATCC	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	3 cut(s)	86, 144, 371
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	37
BmrFI	CCNGG	3 cut(s)	86, 144, 371
BpuEI	CTTGAG	2 cut(s)	125, 213
BpuMI	CCSGG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	39, 369
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	144, 371
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	2 cut(s)	39, 369
BseGI	GGATG	2 cut(s)	52, 208
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	85, 176
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	3 cut(s)	253, 301, 334
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	350
BspDI	ATCGAT	1 cut(s)	333
BspEI	TCCGGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	2 cut(s)	261, 329
BssECI	CCNNGG	2 cut(s)	39, 369
BssMI	GATC	3 cut(s)	253, 301, 334
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	144, 371
Bst4CI	ACNGT	1 cut(s)	219
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	325
BstF5I	GGATG	2 cut(s)	52, 208
BstKTI	GATC	3 cut(s)	256, 304, 337
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	3 cut(s)	253, 301, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	199
BstNI	CCWGG	2 cut(s)	144, 371
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	3 cut(s)	84, 142, 369
BstV1I	GCAGC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	253, 301
BstYI	RGATCY	2 cut(s)	253, 301
Bsu15I	ATCGAT	1 cut(s)	333
BsuI	GTATCC	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	52, 208
BtsIMutI	CAGTG	1 cut(s)	224
CaiI	CAGNNNCTG	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	333
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	8 cut(s)	38, 103, 137, 147, 158, 199, 282, 312
CviKI_1	RGCY	8 cut(s)	38, 103, 137, 147, 158, 199, 282, 312
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	3 cut(s)	255, 303, 336
DpnII	GATC	3 cut(s)	253, 301, 334
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	117, 249
Eco88I	CYCGRG	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	142, 369
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	1 cut(s)	43
FaiI	YATR	3 cut(s)	41, 273, 365
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	2 cut(s)	59, 195
Fsp4HI	GCNGC	1 cut(s)	200
GluI	GCNGC	1 cut(s)	200
HapII	CCGG	2 cut(s)	85, 176
Hin1II	CATG	1 cut(s)	43
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HinfI	GANTC	2 cut(s)	248, 379
HpaII	CCGG	2 cut(s)	85, 176
HphI	GGTGA	2 cut(s)	19, 83
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	4 cut(s)	253, 268, 301, 316
Hpy188III	TCNNGA	4 cut(s)	161, 176, 212, 305
Hpy8I	GTNNAC	1 cut(s)	82
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	199
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	43
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	253, 301, 334
LmnI	GCTCC	3 cut(s)	35, 178, 279
LpnPI	CCDG	9 cut(s)	98, 129, 135, 156, 189, 207, 225, 356, 383
Lsp1109I	GCAGC	1 cut(s)	186
MaeIII	GTNAC	2 cut(s)	325, 383
MalI	GATC	3 cut(s)	255, 303, 336
MboI	GATC	3 cut(s)	253, 301, 334
MboII	GAAGA	4 cut(s)	22, 120, 123, 255
MflI	RGATCY	2 cut(s)	253, 301
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	3 cut(s)	15, 26, 243
MlyI	GAGTC	2 cut(s)	242, 373
MnlI	CCTC	5 cut(s)	37, 148, 183, 237, 316
MroI	TCCGGA	1 cut(s)	175
MspI	CCGG	2 cut(s)	85, 176
MspR9I	CCNGG	3 cut(s)	86, 144, 371
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	144, 371
MwoI	GCNNNNNNNGC	1 cut(s)	199
NciI	CCSGG	1 cut(s)	86
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	253, 301, 334
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	1 cut(s)	383
PctI	GAATGC	1 cut(s)	202
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	201
PleI	GAGTC	2 cut(s)	242, 373
PpsI	GAGTC	2 cut(s)	242, 373
Psp6I	CCWGG	2 cut(s)	142, 369
PspEI	GGTNACC	1 cut(s)	325
PspGI	CCWGG	2 cut(s)	142, 369
PspN4I	GGNNCC	1 cut(s)	37
PstNI	CAGNNNCTG	1 cut(s)	149
PsuI	RGATCY	2 cut(s)	253, 301
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	3 cut(s)	253, 301, 334
SchI	GAGTC	2 cut(s)	242, 373
ScrFI	CCNGG	3 cut(s)	86, 144, 371
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	8 cut(s)	9, 105, 139, 169, 201, 284, 314, 327
SmlI	CTYRAG	2 cut(s)	104, 228
SmoI	CTYRAG	2 cut(s)	104, 228
Sse9I	AATT	3 cut(s)	15, 26, 243
SsiI	CCGC	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	84, 142, 369
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	306, 333
TasI	AATT	3 cut(s)	15, 26, 243
TscAI	CASTG	1 cut(s)	224
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	383
TspRI	CASTG	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.