Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035661.1

Orthogroup ID

OG0006174

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 654

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 653 bp

atggatcccacgggaaacaatccctccatacacccacaatggcagccggagtactttggcgacgcgattattgtaaacggaaaggcatggccaaagttgacggtacgacgtcgtaaatacaggttccgaatcatcaatgccagcaatgcaagattcttcaaattctccttcaccaacgggctgagattcatccacgtgggagctgactcagcgtacctaggaaaacctgttgccagcagggacattttagtggggccatctgagatcactgacgtggtagttgacttttcagagtcaaagactaacgatgctatcctagccaacgacgcagcgtatccttaccccagcggcgacccggtcaacgaagccaacagcaaggtcatgaagttttggattctcggccactcagaggttgacacgtcgcgcattccggagaagcttatccactaccctgctcctgatttatccactgcttcgcagactcgctacattgccatgtacgagtacactagcgacattgatgagccgacgcatctgtatctgaatgccaaaccctacgaggctccggcgaccgagaccccgaaagcggggacgacggagatttggaacgtgatcaatctgacggaggacaatcacccgctgcacattcacct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009888 GO:0009987 GO:0009991 GO:0010073 GO:0012505 GO:0016020 GO:0016036 GO:0016491 GO:0016679 GO:0016682 GO:0016722 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048856 GO:0050896 GO:0051716 GO:0052716 GO:0055114 GO:0071496 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

218

Amino Acids

24.56

Weight (kDa)

5.88

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23010 AT1G71040
fragaria_vesca	FvH4_4g32270 FvH4_4g32270 FvH4_4g32270 FvH4_4g32270 FvH4_4g32270 FvH4_4g32270
malus_domestica	MD13G1026500.v1.1 MD13G1026600.v1.1 MD16G1029700.v1.1
prunus_persica	Prupe.1G323200_v2.0.a1 Prupe.1G323200_v2.0.a1
pyrus_communis	pycom13g02510 pycom13g02520
rosa_chinensis	RchiOBHm_Chr4g0441061
rosa_laevigata	RLG00000006123
rosa_multiflora	Rmu_sc0004609.1_g000002 Rmu_sc0006317.1_g000001 Rmu_sc0035661.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381980
rosa_rugosa	Rorug04G0330500
rosa_samantha	Rh4AG382200 Rh4BG395800 Rh4CG410900 Rh4DG388900
rosa_wichuraiana	Rw4G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	112
AccII	CGCG	2 cut(s)	65, 424
AccIII	TCCGGA	1 cut(s)	430
AciI	CCGC	3 cut(s)	348, 587, 638
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	89, 400
AcsI	RAATTY	1 cut(s)	161
AcvI	CACGTG	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	5 cut(s)	53, 105, 215, 500, 506
AfiI	CCNNNNNNNGG	3 cut(s)	409, 586, 587
AflIII	ACRYGT	1 cut(s)	417
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	2 cut(s)	274, 420
AleI	CACNNNNGTG	1 cut(s)	272
AluBI	AGCT	2 cut(s)	203, 439
AluI	AGCT	2 cut(s)	203, 439
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	3 cut(s)	89, 254, 400
ApeKI	GCWGC	3 cut(s)	43, 329, 640
ApoI	RAATTY	1 cut(s)	161
AspA2I	CCTAGG	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	3 cut(s)	163, 626, 641
AvrII	CCTAGG	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	4
BbrPI	CACGTG	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	55, 341, 627
BccI	CCATC	1 cut(s)	265
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	3 cut(s)	218, 317, 510
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	4 cut(s)	44, 330, 349, 641
BlnI	CCTAGG	1 cut(s)	217
BlsI	GCNGC	4 cut(s)	45, 331, 350, 642
BmcAI	AGTACT	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	356
BmgBI	CACGTC	2 cut(s)	274, 420
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	4 cut(s)	6, 125, 255, 564
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	2 cut(s)	298, 541
BpuMI	CCSGG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	9, 217
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	3 cut(s)	409, 586, 587
Bse3DI	GCAATG	2 cut(s)	151, 489
BseAI	TCCGGA	1 cut(s)	430
BseDI	CCNNGG	2 cut(s)	9, 217
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	3 cut(s)	409, 586, 587
BseMI	GCAATG	2 cut(s)	151, 489
BseMII	CTCAG	4 cut(s)	173, 222, 252, 420
BseXI	GCAGC	3 cut(s)	55, 341, 627
BseYI	CCCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	626
Bsh1236I	CGCG	2 cut(s)	65, 424
Bsh1285I	CGRYCG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	91, 256, 402
BsiEI	CGRYCG	1 cut(s)	573
BsiSI	CCGG	4 cut(s)	47, 356, 431, 566
BslFI	GGGAC	2 cut(s)	254, 604
BslI	CCNNNNNNNGG	3 cut(s)	409, 586, 587
BsmAI	GTCTC	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	254, 604
BsmI	GAATGC	2 cut(s)	426, 550
BsnI	GGCC	3 cut(s)	91, 256, 402
Bso31I	GGTCTC	1 cut(s)	569
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	3 cut(s)	4, 264, 612
BspACI	CCGC	3 cut(s)	348, 587, 638
BspANI	GGCC	3 cut(s)	91, 256, 402
BspCNI	CTCAG	4 cut(s)	174, 221, 253, 419
BspEI	TCCGGA	1 cut(s)	430
BspFNI	CGCG	2 cut(s)	65, 424
BspHI	TCATGA	1 cut(s)	381
BspLI	GGNNCC	4 cut(s)	6, 125, 255, 564
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	569
BsrDI	GCAATG	2 cut(s)	151, 489
BssECI	CCNNGG	2 cut(s)	9, 217
BssMI	GATC	3 cut(s)	4, 264, 612
BssNI	GRCGYC	1 cut(s)	109
BssT1I	CCWWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	109
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	2 cut(s)	142, 235
BstDEI	CTNAG	4 cut(s)	182, 208, 261, 406
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	2 cut(s)	65, 424
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	3 cut(s)	7, 267, 615
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	3 cut(s)	4, 264, 612
BstMCI	CGRYCG	1 cut(s)	573
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 209, 317, 326
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	2 cut(s)	65, 424
BstV1I	GCAGC	3 cut(s)	55, 341, 627
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	3 cut(s)	91, 256, 402
BtgI	CCRYGG	1 cut(s)	9
BtrI	CACGTC	2 cut(s)	274, 420
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	2 cut(s)	267, 468
Cac8I	GCNNGC	2 cut(s)	142, 235
CciI	TCATGA	1 cut(s)	381
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	254
CseI	GACGC	3 cut(s)	71, 335, 538
Csp6I	GTAC	5 cut(s)	52, 104, 214, 499, 505
CviAII	CATG	3 cut(s)	87, 382, 496
CviQI	GTAC	5 cut(s)	52, 104, 214, 499, 505
DdeI	CTNAG	4 cut(s)	182, 208, 261, 406
DpnI	GATC	3 cut(s)	6, 266, 614
DpnII	GATC	3 cut(s)	4, 264, 612
EaeI	YGGCCR	2 cut(s)	89, 400
Eco130I	CCWWGG	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	569
Eco72I	CACGTG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	90, 385, 499
FaiI	YATR	4 cut(s)	29, 88, 383, 497
FaqI	GGGAC	2 cut(s)	254, 604
FatI	CATG	3 cut(s)	86, 381, 495
FauI	CCCGC	2 cut(s)	580, 645
FbaI	TGATCA	1 cut(s)	612
Fnu4HI	GCNGC	4 cut(s)	44, 330, 349, 641
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	44, 330, 349, 641
FspBI	CTAG	3 cut(s)	218, 317, 510
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	4 cut(s)	44, 330, 349, 641
GsaI	CCCAGC	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	91, 256, 402
HapII	CCGG	4 cut(s)	47, 356, 431, 566
HgaI	GACGC	3 cut(s)	71, 335, 538
HhaI	GCGC	1 cut(s)	426
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	3 cut(s)	90, 385, 499
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	4 cut(s)	99, 283, 361, 415
HindII	GTYRAC	4 cut(s)	99, 283, 361, 415
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	7 cut(s)	129, 153, 186, 206, 293, 394, 481
HpaII	CCGG	4 cut(s)	47, 356, 431, 566
HphI	GGTGA	3 cut(s)	163, 626, 641
Hpy166II	GTNNAC	6 cut(s)	76, 99, 283, 361, 415, 507
Hpy188I	TCNGA	6 cut(s)	128, 262, 292, 409, 543, 621
Hpy188III	TCNNGA	3 cut(s)	382, 431, 458
Hpy8I	GTNNAC	6 cut(s)	76, 99, 283, 361, 415, 507
Hpy99I	CGWCG	7 cut(s)	65, 111, 114, 329, 424, 532, 598
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	5 cut(s)	109, 195, 273, 419, 609
HpyCH4V	TGCA	2 cut(s)	149, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 209, 317, 326
HpyF3I	CTNAG	4 cut(s)	182, 208, 261, 406
HpySE526I	ACGT	5 cut(s)	109, 195, 273, 419, 609
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	90, 385, 499
HspAI	GCGC	1 cut(s)	424
Kpn2I	TCCGGA	1 cut(s)	430
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	3 cut(s)	4, 264, 612
LmnI	GCTCC	3 cut(s)	200, 460, 568
Lsp1109I	GCAGC	3 cut(s)	55, 341, 627
LweI	GCATC	2 cut(s)	298, 541
MaeI	CTAG	3 cut(s)	218, 317, 510
MaeII	ACGT	5 cut(s)	109, 195, 273, 419, 609
MalI	GATC	3 cut(s)	6, 266, 614
MboI	GATC	3 cut(s)	4, 264, 612
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	4
MlsI	TGGCCA	1 cut(s)	91
MluCI	AATT	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	91
MlyI	GAGTC	3 cut(s)	200, 302, 475
MnlI	CCTC	4 cut(s)	34, 403, 553, 619
Mox20I	TGGCCA	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	430
MscI	TGGCCA	1 cut(s)	91
MslI	CAYNNNNRTG	4 cut(s)	194, 248, 272, 494
Msp20I	TGGCCA	1 cut(s)	91
MspA1I	CMGCKG	2 cut(s)	348, 640
MspI	CCGG	4 cut(s)	47, 356, 431, 566
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	2 cut(s)	426, 550
MvnI	CGCG	2 cut(s)	65, 424
MwoI	GCNNNNNNNGC	4 cut(s)	146, 209, 317, 326
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	3 cut(s)	4, 264, 612
NlaIII	CATG	3 cut(s)	90, 385, 499
NlaIV	GGNNCC	4 cut(s)	6, 125, 255, 564
NmeAIII	GCCGAG	1 cut(s)	378
OliI	CACNNNNGTG	1 cut(s)	272
PagI	TCATGA	1 cut(s)	381
PctI	GAATGC	2 cut(s)	426, 550
PfeI	GAWTC	4 cut(s)	129, 153, 186, 394
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	45, 331, 350, 642
PleI	GAGTC	3 cut(s)	200, 301, 475
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	3 cut(s)	200, 301, 475
Ppu21I	YACGTR	1 cut(s)	196
PspCI	CACGTG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	4 cut(s)	6, 125, 255, 564
PspPI	GGNCC	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	356
RsaI	GTAC	5 cut(s)	53, 105, 215, 500, 506
RsaNI	GTAC	5 cut(s)	52, 104, 214, 499, 505
RseI	CAYNNNNRTG	4 cut(s)	194, 248, 272, 494
SatI	GCNGC	4 cut(s)	44, 330, 349, 641
Sau3AI	GATC	3 cut(s)	4, 264, 612
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	3 cut(s)	200, 302, 475
ScrFI	CCNGG	1 cut(s)	356
SfaNI	GCATC	2 cut(s)	298, 541
SmiMI	CAYNNNNRTG	4 cut(s)	194, 248, 272, 494
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	3 cut(s)	348, 587, 638
SspMI	CTAG	3 cut(s)	218, 317, 510
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	5 cut(s)	112, 198, 276, 422, 612
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	1 cut(s)	161
TatI	WGTACW	2 cut(s)	51, 504
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	4 cut(s)	129, 153, 186, 394
TscAI	CASTG	2 cut(s)	274, 475
TseI	GCWGC	3 cut(s)	43, 329, 640
TspDTI	ATGAA	2 cut(s)	178, 398
TspGWI	ACGGA	3 cut(s)	93, 611, 638
TspRI	CASTG	2 cut(s)	274, 475
Tth111I	GACNNNGTC	1 cut(s)	356
XapI	RAATTY	1 cut(s)	161
XmaJI	CCTAGG	1 cut(s)	217
XspI	CTAG	3 cut(s)	218, 317, 510
ZraI	GACGTC	1 cut(s)	110
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.