Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006174

Physical Location & Seq

Genomic Coordinates Forward (+)

61843417 .. 61847000

Gene Structure 3584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00381980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGCAACCAGCGATGGTTAGAATGCAGATAATTCTGTTGGCTTCAGCTCTTCTGGTTTTTGGGGTGTTTATGAATTCTTCATGGGCAGAAGACAAGCTTGTAAATCTGACCAGGTTGCAGATGTTTGTGGATGATCTACCTGACATGCCCAGAATCCAAGGCTTTGAGGTTGTCAATGGCGTTCCAAAACCCAGGTCATTCAAGATTGGCATGTACGAGAAGAAATGGAAATTCCATAGAGACCTCCCGGCATCGACGGTGTACGCCTTCGGTACAAGCAAGCGCACAGCAACTGTCCCTGGTCCAACAATCGAGGCCCTCCATGGGATTTCCACCTTCATTAGGTGGCAAAATAATATCCATTCAACCAAACACATCCTCCCTTGGGACCCCACCATTCCGACAGCCCTAGCTTCCACCAAGAAGGGCATTCCTACCGTCGTGCACCTACACGGCGCCATCGGAGAACCCGAGAGTGACGGAAATGCAAACGCATGGTTCACCGAGAAATTCGGAGACCGTGGTCCCACTTGGTCAAAGAAAACATATCGCTACATTAATCAGCAACAGCCCGGAAACTTATGGTATCATGACCACGCCATGGGGTTGACCAGAGTCAACCTCTTGGCCGGTTTGCTCGGGGCCTATATCATTCGGAATCCAGCTGTTGAGGACCCGCTCGGACTTCCTCATGGTGAATTTGATCGTACGTTGGTGGTTTTCGATCGTGCATTTAGCACCGATGGTTCGATATACATGGATCCCACAGGAAACAATCCCTCCATACACCCACAATGGCAGCCGGAGTACTTCGGCGACGCGATTATTGTAAACGGAAAGGCATGGCCAAAATTGACGGTACGACGTCGTAAATACAGGTTCCGAATCATCAATGCCAGCAATGCAAGATTCTTTAAATTCTTCTTCACCAGCGGGCTGAGATTCATCCACGTGGGAGCTGACTCAGCATACCTTGGAAAACCTGTTGCCGGCAGGGACATTTTAGTGGGGCCATCTGAGATCACTGACGTGGTAGTTGACTTTTCAGAGTCAAAGACTAACAATGCTATCCTAGCCAACGACGCAGCGTATCCTTACCCCACCGGCGACCCGGTCAACGAAGCCAACAGCAAGGTCATGAAGTTTTTGATTCTCGGCCACTCAGAGGTTGACACGTCGCATGTTCCGGAGAAGCTTATCCCCTACCCTGCTCCTGATTTATCCAGCGCTTCGCAGACTCGCTACATCGCCATGTACGAGTACACTAGCGACATTGATGAACCGACGCATCTGTATCTGAATGCCAAACCCTACGAGGCTCCGGCGACCGAGACCCCGAAAGCGGGGACGACGGAGATTTGGAACGTGATCAATCTGACGGAGGACAATCACCCGCTGCACATTCACCTTGGGTTGTTTGTTGTACTGGATCAGACTGACTTCGAGAAGGCGGGCATGGAGGAGTTCAAAGATTGCATGACTAAGCTAAACGACGCTGTCAAGTGCCAGATAAGCAAGTATGCACGTGGCAACAAGACGGAGGTGCCAGCTCACGAGAAGGGGTGGAAGAACGTTTTCAAAATGAGACCTGGTGCTGTGACAAAAATTCTGGTCAGATTTGCTTACATACATTCGAATGCATCCTATGAATTCGACCCGACTGCCGAGCCTGGTTACGTATACCATTGCCATATCTTAGATCATGAAGACAATGCGATGATGAGACCATTGAAAATAATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005829 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009267 GO:0009605 GO:0009628 GO:0009888 GO:0009987 GO:0009991 GO:0010073 GO:0012505 GO:0016020 GO:0016036 GO:0016491 GO:0016679 GO:0016682 GO:0016722 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048856 GO:0050896 GO:0051716 GO:0052716 GO:0055114 GO:0071496 GO:0071944 GO:0080167

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

581

Amino Acids

65.48

Weight (kDa)

7.37

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu-oxidase_3	PF07732	145 - 221	4e-06	Multicopper oxidase
Cu-oxidase_2	PF07731	420 - 577	5.8e-12	Multicopper oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23010 AT1G71040
fragaria_vesca	FvH4_4g32270 FvH4_4g32270 FvH4_4g32270 FvH4_4g32270 FvH4_4g32270 FvH4_4g32270
malus_domestica	MD13G1026500.v1.1 MD13G1026600.v1.1 MD16G1029700.v1.1
prunus_persica	Prupe.1G323200_v2.0.a1 Prupe.1G323200_v2.0.a1
pyrus_communis	pycom13g02510 pycom13g02520
rosa_chinensis	RchiOBHm_Chr4g0441061
rosa_laevigata	RLG00000006123
rosa_multiflora	Rmu_sc0004609.1_g000002 Rmu_sc0006317.1_g000001 Rmu_sc0035661.1_g000001
rosa_roxburghii	Rroxscaffold_5G00381980
rosa_rugosa	Rorug04G0330500
rosa_samantha	Rh4AG382200 Rh4BG395800 Rh4CG410900 Rh4DG388900
rosa_wichuraiana	Rw4G032980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	868
AccB1I	GGYRCC	2 cut(s)	455, 1543
AccB7I	CCANNNNNTGG	1 cut(s)	601
AccBSI	CCGCTC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	1680
AccII	CGCG	1 cut(s)	821
AccIII	TCCGGA	1 cut(s)	1186
AciI	CCGC	5 cut(s)	677, 933, 1343, 1394, 1451
AclI	AACGTT	1 cut(s)	1572
AclWI	GGATC	3 cut(s)	755, 768, 1437
AcoI	YGGCCR	3 cut(s)	627, 845, 1156
AcsI	RAATTY	7 cut(s)	73, 230, 509, 698, 917, 1605, 1649
AcuI	CTGAAG	1 cut(s)	27
AcvI	CACGTG	2 cut(s)	952, 1526
AcyI	GRCGYC	2 cut(s)	456, 865
AfaI	GTAC	9 cut(s)	215, 263, 274, 709, 809, 861, 1256, 1262, 1425
AfeI	AGCGCT	1 cut(s)	1228
AfiI	CCNNNNNNNGG	8 cut(s)	324, 342, 385, 601, 989, 1165, 1342, 1343
AflIII	ACRYGT	1 cut(s)	1173
AgsI	TTSAA	5 cut(s)	202, 366, 1468, 1579, 1732
AjiI	CACGTC	2 cut(s)	1030, 1176
AjnI	CCWGG	5 cut(s)	110, 191, 298, 1588, 1669
AleI	CACNNNNGTG	1 cut(s)	1028
AluBI	AGCT	8 cut(s)	47, 97, 413, 665, 959, 1195, 1486, 1550
AluI	AGCT	8 cut(s)	47, 97, 413, 665, 959, 1195, 1486, 1550
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	5 cut(s)	234, 510, 1325, 1579, 1717
Alw44I	GTGCAC	1 cut(s)	443
AlwI	GGATC	3 cut(s)	755, 768, 1437
AlwNI	CAGNNNCTG	1 cut(s)	293
Ama87I	CYCGRG	2 cut(s)	470, 638
Aor13HI	TCCGGA	1 cut(s)	1186
Aor51HI	AGCGCT	1 cut(s)	1228
AoxI	GGCC	6 cut(s)	315, 627, 642, 845, 1010, 1156
ApaLI	GTGCAC	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	799, 1085, 1396
ApoI	RAATTY	7 cut(s)	73, 230, 509, 698, 917, 1605, 1649
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	1574
AspLEI	GCGC	3 cut(s)	285, 458, 1229
AspS9I	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 673, 1010
AsuC2I	CCSGG	3 cut(s)	248, 573, 1112
AsuHPI	GGTGA	5 cut(s)	493, 707, 919, 1382, 1397
AsuII	TTCGAA	1 cut(s)	1634
AvaI	CYCGRG	2 cut(s)	470, 638
AvaII	GGWCC	4 cut(s)	302, 388, 524, 673
BaeGI	GKGCMC	1 cut(s)	447
BalI	TGGCCA	1 cut(s)	847
BamHI	GGATCC	1 cut(s)	760
BanI	GGYRCC	2 cut(s)	455, 1543
BauI	CACGAG	1 cut(s)	1553
BbrPI	CACGTG	2 cut(s)	952, 1526
BbsI	GAAGAC	2 cut(s)	96, 1713
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	811, 1097, 1383
BccI	CCATC	4 cut(s)	7, 467, 737, 1021
BceAI	ACGGC	1 cut(s)	469
BcgI	CGANNNNNNTGC	2 cut(s)	1643, 1677
BciT130I	CCWGG	5 cut(s)	112, 193, 300, 1590, 1671
BciVI	GTATCC	1 cut(s)	1101
BclI	TGATCA	1 cut(s)	1368
BcnI	CCSGG	3 cut(s)	248, 573, 1112
BcoDI	GTCTC	5 cut(s)	234, 510, 1325, 1579, 1717
BfaI	CTAG	3 cut(s)	410, 1073, 1266
BfoI	RGCGCY	2 cut(s)	459, 1230
BfuI	GTATCC	1 cut(s)	1101
BisI	GCNGC	3 cut(s)	800, 1086, 1397
BlsI	GCNGC	3 cut(s)	801, 1087, 1398
BmcAI	AGTACT	1 cut(s)	809
Bme1390I	CCNGG	8 cut(s)	112, 193, 248, 300, 573, 1112, 1590, 1671
Bme18I	GGWCC	4 cut(s)	302, 388, 524, 673
BmeT110I	CYCGRG	2 cut(s)	470, 638
BmgBI	CACGTC	2 cut(s)	1030, 1176
BmgT120I	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 673, 1010
BmrFI	CCNGG	8 cut(s)	112, 193, 248, 300, 573, 1112, 1590, 1671
BmsI	GCATC	3 cut(s)	260, 1297, 1649
BoxI	GACNNNNGTC	2 cut(s)	522, 614
BpiI	GAAGAC	2 cut(s)	96, 1713
BplI	GAGNNNNNCTC	2 cut(s)	606, 638
Bpu14I	TTCGAA	1 cut(s)	1634
BpuMI	CCSGG	3 cut(s)	248, 573, 1112
BsaAI	YACGTR	3 cut(s)	952, 1526, 1678
BsaHI	GRCGYC	2 cut(s)	456, 865
BsaI	GGTCTC	5 cut(s)	234, 510, 1325, 1579, 1717
BsaJI	CCNNGG	9 cut(s)	157, 191, 298, 322, 383, 520, 600, 973, 1408
BsaWI	WCCGGW	1 cut(s)	1186
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 764, 794
Bsc4I	CCNNNNNNNGG	8 cut(s)	324, 342, 385, 601, 989, 1165, 1342, 1343
Bse118I	RCCGGY	3 cut(s)	629, 989, 1103
Bse1I	ACTGG	1 cut(s)	1431
Bse3DI	GCAATG	2 cut(s)	907, 1684
BseAI	TCCGGA	1 cut(s)	1186
BseBI	CCWGG	5 cut(s)	112, 193, 300, 1590, 1671
BseDI	CCNNGG	9 cut(s)	157, 191, 298, 322, 383, 520, 600, 973, 1408
BseGI	GGATG	4 cut(s)	136, 375, 945, 1640
BseLI	CCNNNNNNNGG	8 cut(s)	324, 342, 385, 601, 989, 1165, 1342, 1343
BseMI	GCAATG	2 cut(s)	907, 1684
BseMII	CTCAG	4 cut(s)	929, 978, 1008, 1176
BseNI	ACTGG	1 cut(s)	1431
BseRI	GAGGAG	1 cut(s)	1475
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	811, 1097, 1383
BsgI	GTGCAG	1 cut(s)	1382
Bsh1236I	CGCG	1 cut(s)	821
Bsh1285I	CGRYCG	2 cut(s)	727, 1329
BshFI	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
BshNI	GGYRCC	2 cut(s)	455, 1543
BsiEI	CGRYCG	2 cut(s)	727, 1329
BsiHKAI	GWGCWC	1 cut(s)	447
BsiHKCI	CYCGRG	2 cut(s)	470, 638
BsiSI	CCGG	9 cut(s)	248, 573, 630, 803, 990, 1104, 1112, 1187, 1322
BsiWI	CGTACG	1 cut(s)	707
BslFI	GGGAC	5 cut(s)	281, 401, 510, 1010, 1360
BslI	CCNNNNNNNGG	8 cut(s)	324, 342, 385, 601, 989, 1165, 1342, 1343
BsmAI	GTCTC	5 cut(s)	234, 510, 1325, 1579, 1717
BsmFI	GGGAC	5 cut(s)	281, 401, 510, 1010, 1360
BsmI	GAATGC	4 cut(s)	27, 429, 1306, 1642
BsnI	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
Bso31I	GGTCTC	5 cut(s)	234, 510, 1325, 1579, 1717
BsoBI	CYCGRG	2 cut(s)	470, 638
Bsp119I	TTCGAA	1 cut(s)	1634
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp13I	TCCGGA	1 cut(s)	1186
Bsp143I	GATC	8 cut(s)	133, 703, 724, 760, 1020, 1368, 1429, 1699
Bsp19I	CCATGG	2 cut(s)	322, 600
BspACI	CCGC	5 cut(s)	677, 933, 1343, 1394, 1451
BspANI	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
BspCNI	CTCAG	4 cut(s)	930, 977, 1009, 1175
BspEI	TCCGGA	1 cut(s)	1186
BspFNI	CGCG	1 cut(s)	821
BspHI	TCATGA	3 cut(s)	589, 1137, 1702
BspPI	GGATC	3 cut(s)	755, 768, 1437
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	1634
BspT107I	GGYRCC	2 cut(s)	455, 1543
BspTNI	GGTCTC	5 cut(s)	234, 510, 1325, 1579, 1717
BsrBI	CCGCTC	1 cut(s)	679
BsrDI	GCAATG	2 cut(s)	907, 1684
BsrFI	RCCGGY	3 cut(s)	629, 989, 1103
BsrI	ACTGG	1 cut(s)	1431
BssAI	RCCGGY	3 cut(s)	629, 989, 1103
BssECI	CCNNGG	9 cut(s)	157, 191, 298, 322, 383, 520, 600, 973, 1408
BssMI	GATC	8 cut(s)	133, 703, 724, 760, 1020, 1368, 1429, 1699
BssNAI	GTATAC	1 cut(s)	1681
BssNI	GRCGYC	2 cut(s)	456, 865
BssSI	CACGAG	1 cut(s)	1553
BssT1I	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
Bst1107I	GTATAC	1 cut(s)	1681
Bst2BI	CACGAG	1 cut(s)	1553
Bst2UI	CCWGG	5 cut(s)	112, 193, 300, 1590, 1671
Bst4CI	ACNGT	5 cut(s)	259, 295, 439, 521, 859
Bst6I	CTCTTC	1 cut(s)	54
BstACI	GRCGYC	2 cut(s)	456, 865
BstBAI	YACGTR	3 cut(s)	952, 1526, 1678
BstBI	TTCGAA	1 cut(s)	1634
BstC8I	GCNNGC	6 cut(s)	281, 898, 935, 991, 1453, 1548
BstDEI	CTNAG	6 cut(s)	938, 964, 1017, 1162, 1482, 1696
BstDSI	CCRYGG	3 cut(s)	322, 520, 600
BstENI	CCTNNNNNAGG	1 cut(s)	340
BstF5I	GGATG	4 cut(s)	136, 375, 945, 1640
BstFNI	CGCG	1 cut(s)	821
BstH2I	RGCGCY	2 cut(s)	459, 1230
BstHHI	GCGC	3 cut(s)	285, 458, 1229
BstKTI	GATC	8 cut(s)	136, 706, 727, 763, 1023, 1371, 1432, 1702
BstMAI	GTCTC	5 cut(s)	234, 510, 1325, 1579, 1717
BstMBI	GATC	8 cut(s)	133, 703, 724, 760, 1020, 1368, 1429, 1699
BstMCI	CGRYCG	2 cut(s)	727, 1329
BstMWI	GCNNNNNNNGC	5 cut(s)	902, 965, 1073, 1082, 1512
BstNI	CCWGG	5 cut(s)	112, 193, 300, 1590, 1671
BstNSI	RCATGY	3 cut(s)	148, 214, 1184
BstPAI	GACNNNNGTC	2 cut(s)	522, 614
BstSCI	CCNGG	8 cut(s)	110, 191, 246, 298, 571, 1110, 1588, 1669
BstSLI	GKGCMC	1 cut(s)	447
BstSNI	TACGTA	1 cut(s)	1678
BstUI	CGCG	1 cut(s)	821
BstV1I	GCAGC	3 cut(s)	811, 1097, 1383
BstV2I	GAAGAC	2 cut(s)	96, 1713
BstX2I	RGATCY	1 cut(s)	760
BstYI	RGATCY	1 cut(s)	760
BstZ17I	GTATAC	1 cut(s)	1681
BsuI	GTATCC	1 cut(s)	1101
BsuRI	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
BtgI	CCRYGG	3 cut(s)	322, 520, 600
BtgZI	GCGATG	3 cut(s)	26, 1231, 1730
BtrI	CACGTC	2 cut(s)	1030, 1176
BtsCI	GGATG	4 cut(s)	136, 375, 945, 1640
BtsIMutI	CAGTG	1 cut(s)	1023
Cac8I	GCNNGC	6 cut(s)	281, 898, 935, 991, 1453, 1548
CaiI	CAGNNNCTG	1 cut(s)	293
CciI	TCATGA	3 cut(s)	589, 1137, 1702
CfoI	GCGC	3 cut(s)	285, 458, 1229
Cfr10I	RCCGGY	3 cut(s)	629, 989, 1103
Cfr13I	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 673, 1010
CseI	GACGC	4 cut(s)	827, 1091, 1294, 1502
CsiI	ACCWGGT	2 cut(s)	110, 1588
Csp6I	GTAC	9 cut(s)	214, 262, 273, 708, 808, 860, 1255, 1261, 1424
CviQI	GTAC	9 cut(s)	214, 262, 273, 708, 808, 860, 1255, 1261, 1424
DdeI	CTNAG	6 cut(s)	938, 964, 1017, 1162, 1482, 1696
DinI	GGCGCC	1 cut(s)	457
DpnI	GATC	8 cut(s)	135, 705, 726, 762, 1022, 1370, 1431, 1701
DpnII	GATC	8 cut(s)	133, 703, 724, 760, 1020, 1368, 1429, 1699
DraI	TTTAAA	1 cut(s)	916
EaeI	YGGCCR	3 cut(s)	627, 845, 1156
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco105I	TACGTA	1 cut(s)	1678
Eco130I	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
Eco31I	GGTCTC	5 cut(s)	234, 510, 1325, 1579, 1717
Eco47I	GGWCC	4 cut(s)	302, 388, 524, 673
Eco47III	AGCGCT	1 cut(s)	1228
Eco57I	CTGAAG	1 cut(s)	27
Eco72I	CACGTG	2 cut(s)	952, 1526
Eco88I	CYCGRG	2 cut(s)	470, 638
EcoNI	CCTNNNNNAGG	1 cut(s)	340
EcoO109I	RGGNCCY	4 cut(s)	316, 388, 642, 673
EcoRI	GAATTC	2 cut(s)	73, 1649
EcoRII	CCWGG	5 cut(s)	110, 191, 298, 1588, 1669
EcoT14I	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
EcoT22I	ATGCAT	1 cut(s)	1642
EgeI	GGCGCC	1 cut(s)	457
EheI	GGCGCC	1 cut(s)	457
ErhI	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	5 cut(s)	281, 401, 510, 1010, 1360
FauI	CCCGC	5 cut(s)	684, 926, 1336, 1401, 1444
FbaI	TGATCA	1 cut(s)	1368
FblI	GTMKAC	1 cut(s)	1680
Fnu4HI	GCNGC	3 cut(s)	800, 1086, 1397
FokI	GGATG	4 cut(s)	143, 362, 932, 1627
Fsp4HI	GCNGC	3 cut(s)	800, 1086, 1397
FspBI	CTAG	3 cut(s)	410, 1073, 1266
GlaI	GCGC	3 cut(s)	284, 457, 1228
GluI	GCNGC	3 cut(s)	800, 1086, 1397
HaeII	RGCGCY	2 cut(s)	459, 1230
HaeIII	GGCC	6 cut(s)	317, 629, 644, 847, 1012, 1158
HapII	CCGG	9 cut(s)	248, 573, 630, 803, 990, 1104, 1112, 1187, 1322
HgaI	GACGC	4 cut(s)	827, 1091, 1294, 1502
HhaI	GCGC	3 cut(s)	285, 458, 1229
Hin1I	GRCGYC	2 cut(s)	456, 865
Hin6I	GCGC	3 cut(s)	283, 456, 1227
HinP1I	GCGC	3 cut(s)	283, 456, 1227
HincII	GTYRAC	5 cut(s)	609, 619, 1039, 1117, 1171
HindII	GTYRAC	5 cut(s)	609, 619, 1039, 1117, 1171
HindIII	AAGCTT	2 cut(s)	95, 1193
HpaII	CCGG	9 cut(s)	248, 573, 630, 803, 990, 1104, 1112, 1187, 1322
HphI	GGTGA	5 cut(s)	493, 707, 919, 1382, 1397
Hpy188III	TCNNGA	8 cut(s)	202, 590, 1138, 1187, 1214, 1444, 1553, 1703
HpyAV	CCTTC	5 cut(s)	277, 346, 418, 1441, 1552
HpyCH4III	ACNGT	5 cut(s)	259, 295, 439, 521, 859
HpyCH4IV	ACGT	9 cut(s)	710, 865, 951, 1029, 1175, 1365, 1525, 1572, 1677
HpyF10VI	GCNNNNNNNGC	5 cut(s)	902, 965, 1073, 1082, 1512
HpyF3I	CTNAG	6 cut(s)	938, 964, 1017, 1162, 1482, 1696
HpySE526I	ACGT	9 cut(s)	710, 865, 951, 1029, 1175, 1365, 1525, 1572, 1677
Hsp92I	GRCGYC	2 cut(s)	456, 865
HspAI	GCGC	3 cut(s)	283, 456, 1227
KasI	GGCGCC	1 cut(s)	455
KflI	GGGWCCC	1 cut(s)	388
Kpn2I	TCCGGA	1 cut(s)	1186
KroI	GCCGGC	1 cut(s)	989
KroNI	GCCGGC	1 cut(s)	991
Ksp22I	TGATCA	1 cut(s)	1368
Kzo9I	GATC	8 cut(s)	133, 703, 724, 760, 1020, 1368, 1429, 1699
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	956, 1216, 1324
Lsp1109I	GCAGC	3 cut(s)	811, 1097, 1383
LweI	GCATC	3 cut(s)	260, 1297, 1649
MabI	ACCWGGT	2 cut(s)	110, 1588
MaeI	CTAG	3 cut(s)	410, 1073, 1266
MaeII	ACGT	9 cut(s)	710, 865, 951, 1029, 1175, 1365, 1525, 1572, 1677
MaeIII	GTNAC	3 cut(s)	476, 1597, 1673
MalI	GATC	8 cut(s)	135, 705, 726, 762, 1022, 1370, 1431, 1701
MbiI	CCGCTC	1 cut(s)	679
MboI	GATC	8 cut(s)	133, 703, 724, 760, 1020, 1368, 1429, 1699
MboII	GAAGA	8 cut(s)	41, 69, 101, 232, 913, 916, 1579, 1718
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	1 cut(s)	447
MlsI	TGGCCA	1 cut(s)	847
MluCI	AATT	9 cut(s)	30, 73, 230, 509, 698, 851, 917, 1605, 1649
MluNI	TGGCCA	1 cut(s)	847
Mly113I	GGCGCC	1 cut(s)	456
MlyI	GAGTC	4 cut(s)	624, 956, 1058, 1231
MmeI	TCCRAC	2 cut(s)	329, 425
Mox20I	TGGCCA	1 cut(s)	847
Mph1103I	ATGCAT	1 cut(s)	1642
MroI	TCCGGA	1 cut(s)	1186
MroNI	GCCGGC	1 cut(s)	989
MroXI	GAANNNNTTC	1 cut(s)	1574
MscI	TGGCCA	1 cut(s)	847
MseI	TTAA	2 cut(s)	558, 915
MslI	CAYNNNNRTG	5 cut(s)	950, 1004, 1028, 1250, 1635
Msp20I	TGGCCA	1 cut(s)	847
MspA1I	CMGCKG	3 cut(s)	665, 933, 1396
MspI	CCGG	9 cut(s)	248, 573, 630, 803, 990, 1104, 1112, 1187, 1322
MspR9I	CCNGG	8 cut(s)	112, 193, 248, 300, 573, 1112, 1590, 1671
Mva1269I	GAATGC	4 cut(s)	27, 429, 1306, 1642
MvaI	CCWGG	5 cut(s)	112, 193, 300, 1590, 1671
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	5 cut(s)	902, 965, 1073, 1082, 1512
NaeI	GCCGGC	1 cut(s)	991
NarI	GGCGCC	1 cut(s)	456
NciI	CCSGG	3 cut(s)	248, 573, 1112
NcoI	CCATGG	2 cut(s)	322, 600
NdeII	GATC	8 cut(s)	133, 703, 724, 760, 1020, 1368, 1429, 1699
NgoMIV	GCCGGC	1 cut(s)	989
NmeAIII	GCCGAG	2 cut(s)	1134, 1690
NmuCI	GTSAC	2 cut(s)	476, 1597
NsiI	ATGCAT	1 cut(s)	1642
NspI	RCATGY	3 cut(s)	148, 214, 1184
NspV	TTCGAA	1 cut(s)	1634
OliI	CACNNNNGTG	1 cut(s)	1028
PagI	TCATGA	3 cut(s)	589, 1137, 1702
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	2 cut(s)	468, 1254
PctI	GAATGC	4 cut(s)	27, 429, 1306, 1642
PdiI	GCCGGC	1 cut(s)	991
PdmI	GAANNNNTTC	1 cut(s)	1574
PfeI	GAWTC	6 cut(s)	153, 658, 885, 909, 942, 1150
Pfl23II	CGTACG	1 cut(s)	707
PflFI	GACNNNGTC	2 cut(s)	1112, 1496
PflMI	CCANNNNNTGG	1 cut(s)	601
PkrI	GCNGC	3 cut(s)	801, 1087, 1398
Ple19I	CGATCG	1 cut(s)	727
PleI	GAGTC	4 cut(s)	623, 956, 1057, 1231
PluTI	GGCGCC	1 cut(s)	459
PmaCI	CACGTG	2 cut(s)	952, 1526
PmlI	CACGTG	2 cut(s)	952, 1526
PpsI	GAGTC	4 cut(s)	623, 956, 1057, 1231
Ppu21I	YACGTR	3 cut(s)	952, 1526, 1678
PpuMI	RGGWCCY	2 cut(s)	388, 673
PshAI	GACNNNNGTC	2 cut(s)	522, 614
PshBI	ATTAAT	1 cut(s)	558
Psp1406I	AACGTT	1 cut(s)	1572
Psp5II	RGGWCCY	2 cut(s)	388, 673
Psp6I	CCWGG	5 cut(s)	110, 191, 298, 1588, 1669
PspCI	CACGTG	2 cut(s)	952, 1526
PspGI	CCWGG	5 cut(s)	110, 191, 298, 1588, 1669
PspLI	CGTACG	1 cut(s)	707
PspPI	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 673, 1010
PspPPI	RGGWCCY	2 cut(s)	388, 673
PstNI	CAGNNNCTG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	760
PsyI	GACNNNGTC	2 cut(s)	1112, 1496
PvuI	CGATCG	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	665
RsaI	GTAC	9 cut(s)	215, 263, 274, 709, 809, 861, 1256, 1262, 1425
RsaNI	GTAC	9 cut(s)	214, 262, 273, 708, 808, 860, 1255, 1261, 1424
RseI	CAYNNNNRTG	5 cut(s)	950, 1004, 1028, 1250, 1635
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	558, 915
SatI	GCNGC	3 cut(s)	800, 1086, 1397
Sau3AI	GATC	8 cut(s)	133, 703, 724, 760, 1020, 1368, 1429, 1699
Sau96I	GGNCC	7 cut(s)	302, 316, 388, 524, 642, 673, 1010
ScaI	AGTACT	1 cut(s)	809
SchI	GAGTC	4 cut(s)	624, 956, 1058, 1231
ScrFI	CCNGG	8 cut(s)	112, 193, 248, 300, 573, 1112, 1590, 1671
SduI	GDGCHC	1 cut(s)	447
SexAI	ACCWGGT	2 cut(s)	110, 1588
SfaNI	GCATC	3 cut(s)	260, 1297, 1649
SfoI	GGCGCC	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	1634
SgrAI	CRCCGGYG	1 cut(s)	1103
SinI	GGWCC	4 cut(s)	302, 388, 524, 673
SmiMI	CAYNNNNRTG	5 cut(s)	950, 1004, 1028, 1250, 1635
SnaBI	TACGTA	1 cut(s)	1678
Sse9I	AATT	9 cut(s)	30, 73, 230, 509, 698, 851, 917, 1605, 1649
SsiI	CCGC	5 cut(s)	677, 933, 1343, 1394, 1451
SspDI	GGCGCC	1 cut(s)	455
SspMI	CTAG	3 cut(s)	410, 1073, 1266
StyD4I	CCNGG	8 cut(s)	110, 191, 246, 298, 571, 1110, 1588, 1669
StyI	CCWWGG	6 cut(s)	157, 322, 383, 600, 973, 1408
TaaI	ACNGT	5 cut(s)	259, 295, 439, 521, 859
TaiI	ACGT	9 cut(s)	713, 868, 954, 1032, 1178, 1368, 1528, 1575, 1680
TaqI	TCGA	7 cut(s)	254, 312, 723, 749, 1443, 1634, 1653
TaqII	GACCGA	1 cut(s)	1343
TasI	AATT	9 cut(s)	30, 73, 230, 509, 698, 851, 917, 1605, 1649
TatI	WGTACW	3 cut(s)	807, 1260, 1423
TfiI	GAWTC	6 cut(s)	153, 658, 885, 909, 942, 1150
Tru1I	TTAA	2 cut(s)	558, 915
Tru9I	TTAA	2 cut(s)	558, 915
TscAI	CASTG	1 cut(s)	1030
TseFI	GTSAC	2 cut(s)	476, 1597
TseI	GCWGC	3 cut(s)	799, 1085, 1396
Tsp45I	GTSAC	2 cut(s)	476, 1597
TspDTI	ATGAA	8 cut(s)	69, 86, 328, 934, 1154, 1293, 1662, 1719
TspGWI	ACGGA	6 cut(s)	495, 849, 1367, 1394, 1553, 1730
TspRI	CASTG	1 cut(s)	1030
Tth111I	GACNNNGTC	2 cut(s)	1112, 1496
Van91I	CCANNNNNTGG	1 cut(s)	601
VneI	GTGCAC	1 cut(s)	443
VpaK11BI	GGWCC	4 cut(s)	302, 388, 524, 673
VspI	ATTAAT	1 cut(s)	558
XagI	CCTNNNNNAGG	1 cut(s)	340
XapI	RAATTY	7 cut(s)	73, 230, 509, 698, 917, 1605, 1649
XceI	RCATGY	3 cut(s)	148, 214, 1184
XmiI	GTMKAC	1 cut(s)	1680
XmnI	GAANNNNTTC	1 cut(s)	1574
XspI	CTAG	3 cut(s)	410, 1073, 1266
ZraI	GACGTC	1 cut(s)	866
ZrmI	AGTACT	1 cut(s)	809
Zsp2I	ATGCAT	1 cut(s)	1642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.